TCONS_00066712 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066712
Unique NameTCONS_00066712
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066712 ID=TCONS_00066712|Name=TCONS_00066712|organism=Clytia hemisphaerica|type=transcript|length=505bp
GTACTGAAGACAACATTTCCTTTTCGATGTGGTTTTATCGGCTCCTCGTG
TGGTgtatttttcttaagaaattcgTTAACTTCATCTGTTTCTTGGGAAG
TTATCTCTGAGATGTTTTTAGCCAACATGAGATAACGGTGGCATGTTTTA
TCGGAAGGTTTGATCATTCCGATCGGGAATACAAATGCAATCCAGCAACA
TATGTTAAACAAAAGCATAACTTTACGTATATTCAATTTGTCGGCTAATG
AACCAAGACTTGGTGCTGAGATGAATTCGATTAATGGTCGACAACCAACT
AAGATACCGCTTTGTGTTGGATTCATTCCGATTTGCTTGTAATAGACACC
AAGAAGTGGGAAAAAAGAACCATAAGCCGACCAAAAGAAATAGTAAAATA
CTTTTGAAACAAGTAGTTTTCGGTTGACTTTGGAGCATTGTTTTTGCATA
ATATCTTTGCATTTCTCCTTAATTTCATCACCATATTTGGCAGCTTTTTC
TTCCT
Run BLAST on NCBI

protein sequence of TCONS_00066712-protein

>TCONS_00066712-protein ID=TCONS_00066712-protein|Name=TCONS_00066712-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
EEKAAKYGDEIKEKCKDIMQKQCSKVNRKLLVSKVFYYFFWSAYGSFFPL
LGVYYKQIGMNPTQSGILVGCRPLIEFISAPSLGSLADKLNIRKVMLLFN
ICCWIAFVFPIGMIKPSDKTCHRYLMLAKNISEITSQETDEVNEFLKKNT
PHEEPIKPHRKGNVVFS
Run BLAST on NCBI

transcript from alignment at scaffold_458:118377..118881

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066712 ID=TCONS_00066712|Name=TCONS_00066712|organism=Clytia hemisphaerica|type=transcript|length=505bp|location=Sequence derived from alignment at scaffold_458:118377..118881 (Clytia hemisphaerica)
AGGAAGAAAAAGCTGCCAAATATGGTGATGAAATTAAGGAGAAATGCAAA
GATATTATGCAAAAACAATGCTCCAAAGTCAACCGAAAACTACTTGTTTC
AAAAGTATTTTACTATTTCTTTTGGTCGGCTTATGGTTCTTTTTTCCCAC
TTCTTGGTGTCTATTACAAGCAAATCGGAATGAATCCAACACAAAGCGGT
ATCTTAGTTGGTTGTCGACCATTAATCGAATTCATCTCAGCACCAAGTCT
TGGTTCATTAGCCGACAAATTGAATATACGTAAAGTTATGCTTTTGTTTA
ACATATGTTGCTGGATTGCATTTGTATTCCCGATCGGAATGATCAAACCT
TCCGATAAAACATGCCACCGTTATCTCATGTTGGCTAAAAACATCTCAGA
GATAACTTCCCAAGAAACAGATGAAGTTAAcgaatttcttaagaaaaata
cACCACACGAGGAGCCGATAAAACCACATCGAAAAGGAAATGTTGTCTTC
AGTAC

Coding sequence (CDS) from alignment at scaffold_458:118377..118881

>TCONS_00066712 ID=TCONS_00066712|Name=TCONS_00066712|organism=Clytia hemisphaerica|type=CDS|length=501bp|location=Sequence derived from alignment at scaffold_458:118377..118881 (Clytia hemisphaerica)
GAAGAAAAAGCTGCCAAATATGGTGATGAAATTAAGGAGAAATGCAAAGA
TATTATGCAAAAACAATGCTCCAAAGTCAACCGAAAACTACTTGTTTCAA
AAGTATTTTACTATTTCTTTTGGTCGGCTTATGGTTCTTTTTTCCCACTT
CTTGGTGTCTATTACAAGCAAATCGGAATGAATCCAACACAAAGCGGTAT
CTTAGTTGGTTGTCGACCATTAATCGAATTCATCTCAGCACCAAGTCTTG
GTTCATTAGCCGACAAATTGAATATACGTAAAGTTATGCTTTTGTTTAAC
ATATGTTGCTGGATTGCATTTGTATTCCCGATCGGAATGATCAAACCTTC
CGATAAAACATGCCACCGTTATCTCATGTTGGCTAAAAACATCTCAGAGA
TAACTTCCCAAGAAACAGATGAAGTTAAcgaatttcttaagaaaaatacA
CCACACGAGGAGCCGATAAAACCACATCGAAAAGGAAATGTTGTCTTCAG
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041718XLOC_041718Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066712-proteinTCONS_00066712-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066712-exon-scaffold_458-1491911889:118377..118881TCONS_00066712-exon-scaffold_458-1491911889:118377..118881Clytia hemisphaericaexon
TCONS_00066712-exon-scaffold_458-1510915933:118377..118881TCONS_00066712-exon-scaffold_458-1510915933:118377..118881Clytia hemisphaericaexon
TCONS_00066712-exon-scaffold_458-1575043694:118377..118881TCONS_00066712-exon-scaffold_458-1575043694:118377..118881Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_458supercontigscaffold_458:118377..118881 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	8.62934	8.22295	0.505007	0.875746	3.03579	1.75613	4.14509	4.55307	1.63341	8.61844	4.40884	2.58224	0.127411	0	1.62239	2.5436	1.64911	1.12446	1.41554	2.29697	0.328696	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024989MFS_assoc_dom
IPR020846MFS_dom
Blast
[Close]
BLAST of TCONS_00066712 vs. Swiss-Prot (Human)
Match: MFSD6 (Major facilitator superfamily domain-containing protein 6 OS=Homo sapiens GN=MFSD6 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.474e-35
Identity = 61/121 (50.41%), Postives = 84/121 (69.42%), Query Frame = -3 
Query:  141 EEKAAKYGDEIKEKCKDIMQKQCSKVNRKLLVSKVFYYFFWSAYGSFFPLLGVYYKQIGMNPTQSGILVGCRPLIEFISAPSLGSLADKLNIRKVMLLFNICCWIAFVFPIGMIKPSDKTC 503
            E  ++     I E+  D ++K C K+N  LL+SKVFY+FF+SAYGS +PLL VYYKQ+GM+P+QSG+LVG R  IEF SAP  G +AD+    K++LLF++ CW+ F   IG +KP+   C
Sbjct:   39 ETPSSTETSAIPEEEIDWIEKHCVKINNDLLISKVFYFFFYSAYGSLYPLLPVYYKQLGMSPSQSGLLVGIRYFIEFCSAPFWGVVADRFKKGKIVLLFSLLCWVLFNLGIGFVKPATLRC 159
The following BLAST results are available for this feature:
BLAST of TCONS_00066712 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MFSD61.474e-3550.41Major facilitator superfamily domain-containing pr... [more]
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