TCONS_00066639 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066639
Unique NameTCONS_00066639
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066639 ID=TCONS_00066639|Name=TCONS_00066639|organism=Clytia hemisphaerica|type=transcript|length=523bp
AACCTATTCATATCAAtgtattaatcatttttttcaaaatggtaaaaatt
aaTACTCTTTAACTATAGAAGTCTGATTTTCAAGAAAGAGAGATAGAAAG
AGATTCATTTCCAACAGTACCTAGTACCCAATAGTAAAATAGGCAAAATG
AAGACTATTTTACTCATAAATGTATTAATTTTGGTCAACATTTGTCATTG
TGTGACTTACACATACCCTGGCAAAGGATTCACGAAATTTCCAATCTTGA
AGAGTAGCCAAACCACTAAAATATCTTTCGAGTTTCAAACCTCATCATTA
GAAGTAGAGAGAAGCTTATTGTATGTGGATAATGTGCGTGGTGGTGGGAT
GGAAGGCGATTCCATGCGTGTTTGGTTGGATGCAGGAAGATTGAAAATCG
CTTGGAATGTTGTCAACGGTAATTATAGAGATGGTGATATCAAGGAAGTT
GGTCACAACTTGGACGATAATATCAAGCATTATGTTGTCATCGAACGTTT
TAACGGCAAACATTTTGTTGTTA
Run BLAST on NCBI

transcript from alignment at scaffold_457:226798..228449+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066639 ID=TCONS_00066639|Name=TCONS_00066639|organism=Clytia hemisphaerica|type=transcript|length=1652bp|location=Sequence derived from alignment at scaffold_457:226798..228449+ (Clytia hemisphaerica)
AACCTATTCATATCAAtgtattaatcatttttttcaaaatggtaaaaatt
aaTACTCTTTAACTATAGAAGTCTGATTTTCAAGAAAGAGAGATAGAAAG
AGATTCATTTCCAACAGTACCTAGTACCCAATAGTAAAATAGGCAAAATG
AAGACTATTTTACTCATAAATGTATTAATTTTGGTCAACATTTGTCATTG
TGTGACTTACACATACCCTGGCAAAGGATTCACGAAATTTCCAATCTTGA
AGAGTAGCCAAACCACTAAAATATCTTTCGAGTTTCAAACCTCATCATTA
GAAGTAGAGAGAAGCTTATTGTATGTGGATAATGTGCGTGGTGGTGGGAT
GGAAGGCGATTCCATGCGTGTTTGGTTGGATGCAGGAAGATTGAAAATCG
CTTGGAATGTTGTCAACGGTGACTATATATTGATTTAAAACCTAGATCAT
TTTAATGAGCTTGGTCATGGTTTAAACACTAGAAAAGTTTCGTGACTTTG
ACAGGCCCATCGGAAACGGGAAGACTGGGGAGACTTAAGCCTTCCCACTT
TTGaccaaatgagattttttctcaaattcctagcaaaCTTCATTTCAATT
GAGACTTCAGCCTTCCCACTTTAACGGTTGTTCCGCTGGGCCTGTTTGAC
TCACGGTAAACATAATTTTGAGGATAACAAATTTTAGGAATTTAGTTATT
AGTTTAGCGAATAGAGTGATGAATTTAAATTAAAGGTTGTAGGTTCAAGT
CTGAAGTAGCAAGGGGACGAAATAAAAAACCACAACTTATCGTTAAAATG
GCTATCCGTTTTGCTGTTACTTACCTGTTATTATCCTTGTAAAGCTTTCA
AAGTGTTAAACTTCAGTTAAGGTTTTATTGAGTCGAACCGAGACCTCGTG
AAACTGATACGACTGATGCgtttccttttcttctttcattttgttCAGGT
AATTATAGAGATGGTGATATCAAGGAAGTTGGTCACAACTTGGACGATAA
TATCAAGCATTATGTTGTCATCGAACGTTTTAACGGTATAGAGTTTAATT
TCAATGAACAGGACCTATCCAAATTGTTATAATGATCTCTGGAAGTTCta
gattttaaatttcaaaaaaattagatcAACATTTAAATCGTTTTTCCGAG
CACTGATTGAGCAATGCGACTGAGTTAAACACGAAAAAGATTTCCCGGTT
GCGGCCATTTTTGAGAACAAGTTACCTTCTATCTTtctggaaaaatcaga
aaaatctagTGAGTAAATTTTGCCTATATATTGTTTTGGACCAAATTTGC
CATAAAACCCCCTACAAGGGAAAATTTCGACAAAGTGTTTTCAGGGTTTT
TGGGACTTTTTTGACACGAAAGGTTCATGATGAATGAGAGTTGACCAGGc
aaattgatttgaattttgAGCGAACTTTTTGAAAGATATCCCTAAGAGAA
GACAAGCAAATTCAGAAACATGAACAAGTTCAATCTCAAAAGGTCCCATG
ATTATTGTCTGCAAAATTTCTGATACCGAATATACTGTAACCATGTTAAT
GAGGATAAAGGGAGATTTTTGGTTTATAGAAAATACCTATTACTGTAGTC
AATGCTAAACAAGGTaactttttttactttatagGCAAACATTTTGTTGT
TA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041680XLOC_041680Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066639-exon-scaffold_457-1491911889:226798..227215TCONS_00066639-exon-scaffold_457-1491911889:226798..227215Clytia hemisphaericaexon
TCONS_00066639-exon-scaffold_457-1510915933:226798..227215TCONS_00066639-exon-scaffold_457-1510915933:226798..227215Clytia hemisphaericaexon
TCONS_00066639-exon-scaffold_457-1575043694:226798..227215TCONS_00066639-exon-scaffold_457-1575043694:226798..227215Clytia hemisphaericaexon
TCONS_00066639-exon-scaffold_457-1491911889:227746..227832TCONS_00066639-exon-scaffold_457-1491911889:227746..227832Clytia hemisphaericaexon
TCONS_00066639-exon-scaffold_457-1510915933:227746..227832TCONS_00066639-exon-scaffold_457-1510915933:227746..227832Clytia hemisphaericaexon
TCONS_00066639-exon-scaffold_457-1575043694:227746..227832TCONS_00066639-exon-scaffold_457-1575043694:227746..227832Clytia hemisphaericaexon
TCONS_00066639-exon-scaffold_457-1491911889:228432..228449TCONS_00066639-exon-scaffold_457-1491911889:228432..228449Clytia hemisphaericaexon
TCONS_00066639-exon-scaffold_457-1510915933:228432..228449TCONS_00066639-exon-scaffold_457-1510915933:228432..228449Clytia hemisphaericaexon
TCONS_00066639-exon-scaffold_457-1575043694:228432..228449TCONS_00066639-exon-scaffold_457-1575043694:228432..228449Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_457supercontigscaffold_457:226798..228449 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0877731	0	0.852043	0.441169	0	0	0	0	0	0	0	0	0	0.585753	1.59625	0	1.05773	0	0	0.743325	0	0	0	0.370508	0	0.0749824
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066639 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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