TCONS_00066563 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066563
Unique NameTCONS_00066563
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4729

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066563 ID=TCONS_00066563|Name=TCONS_00066563|organism=Clytia hemisphaerica|type=transcript|length=4729bp
TAGCAGAGTAAAAAAAGGGCACATCACATCAGACATCACACATGGATAAT
CCCATGCAATGCTCAGTCGTCAGTTGCTAATATTTTACCTGTTTAAAGAC
ATTCTTGATAAAGCATATACACGTGAAATGCAAACATTGACAAATTTCTT
CTCTCATCATGCTATCATCggaagatatttgttttttatccAAATCATGC
AAATGATGATATAGAAACTAGAAAGACTAAAATTTTTGACAGTTTGACCT
TGAGATGTTAGAAACTAAACATGGAAATTGATGGTGGCCTTAAGGGTTCA
ATGGTGAAAATTACAAATAGAGCAAAACGGAGATTGATTAAACGCAAATC
AAATGTAAATGCAAAGAAGTTAGTTTTTGATGCTGTGCATAAGAAAGATG
TTTCATTGAAAgagAAACAAGAGATTTTATGGGCAGCATCTGAATGTGAT
CGAGAAGATATTCTAGAAGAATTACTACAAGATACACAGATTGATATCAA
TTTGACTGATGAGaatgGCCACTCAGCCATATTTCACGCAGTTATCAATG
GCTCCACAGACTGCTTCAATACGTTGTTGAGCAAAAATGCTGATGTGCAA
TTAAGTGATACTACTGGACGAAACGTGTTGACACATGCAGTAGAAAACAA
CCACCATTCAATCGTCTCCAAGGTTCTCAAAGTTGTCACTCCAAATTTGA
TCGATGATACAGTAGAACACTTGATATCAACAAGAAGTAGTAAACTTTTG
TGTAATTTTGCAAATTATGAAGAAGttgatttgtcaaaatttgCTGGTGT
TACTGGTTTCCATGATAAAAAGAGGCAGTATTCAGCACTTCACTATGCCT
GCAAGAAAGGATATATAACTTCAGcagaaaaattgatcaaaaatgGAACA
AGACTTACGAATCGAAATGCCAAAGAGACACCTTTGTTACTTGCATATTC
TCAAAAGAACTTGGAGATTATTTCAATGCTTTTGAATCATGGCGTAGTAT
TGAGCAACAATATGAAAGCTCTATCGGGATTTTCGTATTGGCTCAACGGT
AAATCAGGCGAGtatcaaatcctcataaaaaatcCATCGGAATTTCAACA
CGCATTGTCTCTTTACAAAGAGAGGTTGACAATTGAAGACCAACAATTAT
TCATCATTTTCAATCGTTTAAAAGAGCAGCCTGACCATCCTGAATTGGTG
CATCTAGCCTGTGAAAAACACCTGACTTTCATCGAATGCAGTCTAGTGGA
TATACCTTATATGCCATCAATAAAAAGCCTTGCTTTATATTCGACAACTA
CGGAAAGCTACACGAACTTAAGCCTGAGAAAGATCAAGTCTTTGGAAACA
TTGACAATCTATGATTCTAAACTAACAAATTTACCAAGTAACCTTCATGA
ATGTAAAAACCTTCGTTATCTGAACATCAACAATTGTAAACGATTGCAAC
ATTTACCAACTTGGATCAAAGACCTTCCACTTGAGAATCTCATNTACACA
CTTAATCACAGAAGGAGTCGTACAACATTCGTCCCTTGAGCAAGCCTGGT
GTGACATCGAACCTCTATTTCGGAGTAAGGTTCTCACACTGTTTCGTCAA
GCTGGTATATTCATTCGGCTCTCTGACGATGCCGATTTAGTGCCATGTCG
NACCACTTGAGAATCTCATTCTTAATGACAACAATCTCAATGAATTACCA
GAACTGCTCCCAAGAACACTACATGTTTTGAATATCCAAAacaacaatat
caaaaagctttcacCGTTACTAGCTCAATGTGAAAAACTAACATCAATCA
ATCTACATGGCAACCCTTTGGTGTTCCCAGAACTTTCAATCGCAATCAAA
AGCAAAACATCTGATTTGTTAGCTTATTTGAAAGCCTTCTTAAACAACAC
CATACCCAATAAAACGCTTAAGATCTCCTTGGTTGGACAAGAGCAGGTTG
GCAAATCTACCCTTCTACAAGCTATCAAATCCAATACAGGATTATGCGAA
GATACAAGCTCAATCATCAAGACGGATGGTCTTGAAATCTCAGATGTACA
ATTAAGGGATTTGAACTTTCGTATCTTTGATCTGGCTGGTGATATCGATT
TTATCGAAACTCATACAATGTTCATATCGGAAGGAACACTCTTTCTAGCA
GTGTTTGATCTGCAGATGTTCTCTTTATCCCTTAACACGTTAGACCCCTA
TGCTTTTGGCCGTATTGAAGTCTGGCTTTCGTCTATCTTCGCACAATCTC
CTAATTCTAGAGTCATCCTAATTGGAACCCACGCCGATGCTGAAATGATT
ACATCATCCCTTCTCGATTTAACATGGCACAAAATCAAAACTATTTTGTC
ATCAGCACGTGAAGCACACGTGGCAAACTACGCTAACGATTTTCAACACA
AATGTCTACTTTGTTCTGACACGTCATCATTGAATCGTGTTTCAACAGAT
GGAGGTGCTGGTTACGTCTACATTGAATCCAGTGAAACTACAAATGATGA
ATCCACTGAATCGACAGATGGTTCTAACGTCACATCTAATAAACAGGAGG
ACAATCAAAATATGGTTTTTCCTCACATTGTGGGTTACTTTGAAGTGAGC
AGCACTAAACAAATCCCCCGCAAAgtgttttcaaacaaaaacaccaGTAT
TGAGCAACTCAAAGATTGTATCTATAATACAGCACAAGATATGTTATCCT
TGAATCCCTTCATACCAAGGAAATGGGTGGATCTACGGAACTACCTTACT
AAAAAAGCGGAGAAGCAATTCCCAATCATTACCTACCAAGAATTGATGGA
GGTGTCACGTGAATGTGGTTTTAGCAAATCAGATGACGAGTTGAGTCCAT
TCTTACGTCATTATAATTCTTGTGGTGAactattatattattttgatatA
GACGAGCTTAATGATATTATTATCATAGATCCACAATGGCTGAGTAATCA
ACTCCGTGCAGTAATTAGTTTCCGTGCTACACACTTAATCACAGAAGGAG
TCGTACAACATTCGTCCCTTGAGCAAGCCTGGTGTGACATCGAACCTCTA
TTTCGGAGTAAGGTTCTCACACTGTTTCGTCAAGCTGGTATATTCATTCG
GCTCTCTGACGATGCCGATTTAGTGCCATGTCGATTACCAGTGGGCCGTC
CTTCAGAAGATATGTGGGCGCCTGATTCAGAGAACACAGAAAACCAAGTA
TCCTACTGTTTCAAATTTAATAACCTACCAACATCATTTTTCTCGCATTT
AACGTCACTTGTCGAAAGCCGTAGAGAGGAATTTAGTGTCGGAAAGATGG
CACCAGTTTACTATAGCAACCATATTGTTTATTTTACACAATCATTGGGA
ATACCATGTGAAGAACACACGAAAAAGAGTGAAATAAACTTGAGTCGATT
GTCAACACATGATGCAGTTAATTATTTAACGAGAGGTGTAAAATTATCAC
GATTCTTGTCACTCGATTCTGATTCGGTTCAAAGTTTACTTGAAGTTGGT
CGGAACTCATTTCGAATTTCAATGGCCGAGTTTTCTGATTTTAACGAAGT
TGTGGTGGATGAGAGTGAGTCGAAACCAAATTTCCGACATCGAATTCATT
TCGAATTATTACCGCATTTGAAATGTATTGTAATTAGCATCCGTGGTCCC
AAACCATGTTGTTTAGCCCCAGAAACAATCGATCTTTTGAACCGTGTTCG
TCTGACACGCTACAATTCTGTCCACACCGAGTTCTTCTTTTATTGTCCCA
TATGCATCAAGAAAGGTATGCAGAATCCTTCAAAATTCGCTTTGTCGGAG
TTAAATGATAGCGTGCCAATTTGTGAAAAAGGTCATGATTCTAAAGATTG
GAAAAACGTGCAAACAGGTGTCTGTGAGTATGACTATAAGTTGACAAATC
GTCAACTAATGAGCACATTAAATGACTTTGATTGTCCGAAATTGTTTCTC
ATGATGCCTGTTAATTTACATGGAGTTGGATTTCGTGAATTTTATACCTT
ATCATACCTCAAAGAAGGTTACTCCGTACATCTTTTATGTGAGTATCCAG
ATTGTTGGCATTTCTTAACAACACCCGGATATCGTATAACACGACCTAAA
GAATTCGTTAAAAAATACGGACGCCGTCTTCAAACGATGTTAAGAGTGCT
ATCTAAATTTGAGATTCCTGCTCGAATTGCTGGATTAGCAGTTGAGAGTG
CGAACAGTCTTGCAGACTTGTTGGCTTCGTTGAAAGAACTTGCCAATGAT
CTAGATGAGCATTTATCCAGTTTTTCGGAAGActggtcaaattttcaaat
ccgTTCTAATTTGGAAGACAGTTTGTGTTATTTGAATAGTCATGATGGTT
TGAATCGTCGTGAATTCCGACGATTTTTAAATAAAGCTGACGAGGAAAAT
CGTTTTGGAGACCTGGTACCGAAGTTTGTTGGAGAACGTATTGTGTGGTT
GTGTGAGGCGCATTCCAAATGTGAAGACCCTAAccgaaaacaatttttca
aaagctaGTTTATTTTATAATATATTTGACAGCCTTATCTGCTCAAATGA
GCATTGTGTCAGCCTTTAAATTCGAAGTGTCAatgacgcaattttttttc
gcaattcacacaatttttgttcacgaaaagttttccaattcacgcattcg
cgCATATTTTTTTACGCCTTCACGCATTTGCGCAAGTGAAAAggcccatt
cacgcaatcacgcaaatcttttttcaaat
Run BLAST on NCBI

transcript from alignment at scaffold_456:484701..497366-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066563 ID=TCONS_00066563|Name=TCONS_00066563|organism=Clytia hemisphaerica|type=transcript|length=12666bp|location=Sequence derived from alignment at scaffold_456:484701..497366- (Clytia hemisphaerica)
TAGCAGAGTAAAAAAAGGGCACATCACATCAGACATCACACATGGATAAT
CCCATGCAATGCTCAGTCGTCAGTTGCTAATATTTTACCTGTTTAAAGAC
ATTCTTGATAAAGCATATACACGTGAAATGCAAACATTGACAAATTTCTT
CTCTCATCATGCTATCATCGGAAGATATTTGTTTTTTATCCAAATCATGC
AAATGATGATATAGAAACTAGAAAGACTAAAATTTTTGACAGTTTGACCT
TGAGATGTTAGAAACTAAACATGGAAATTGATGGTGGCCTTAAGGTAATT
CCTTTTCACTTAATTTGTGCTTTATTTGGTTTTTCTGTACAATTTTCTGA
CAGTAGAAGACGATTTGTTGTTTGTAGGATAGACAAGCCCAACAGCCATT
ATAGTGAAATAGTCACAGTGAAACACTCAGGGAAGGAGTTTTAAGGTTGA
CAGTAGGGCCGATCAGCTGGTTGGGTATATTGATGACCCAATCCTTGAAC
TGAGCTTGCCTCTTGGATGGCTGTGTTGAGATATTCCTCCAGTTAGTGGA
AGTACTTCGATTTGTGGAGCTTCTTTATGGCGCGCCAAAAGGCTTTTTAA
TACTAACTTTTTTTTATAATATCAACTTTTTTTTATAATACTAACATTTT
TTTATAATACCAACTTTCACTTTTATAATACCAACTTTCATTTTTATAAT
ATCAACTTTTTTTATAATACCAACTTTCATTTTTATAATACCAACTTTCA
TTTTTATAATATCAACTTTTTTTTATAATACCAACTTTTTATTATAATAC
CAACTTTCATTTTTATAATATCAGATTTTTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTAAATAGCAACTT
TTTTTTACAATACCAACTTTTTTTATAATATCAACTTTTTTTTTATAACA
CTAACTTTCATTTTTATAATATCAATTTTTTTGATCTCGCTTAGTCAATT
TTCTTTTTTCACCATGTAGACGGAACTTTACAGTTCTTCACTGGAAAATC
TAAGAATGTGGATGCACCACCACAGATATCTGTAAAGCCCGAAGGGCTAG
ATAGGCAACTTTAAGCTTTCTCCAGCAANNTAAACCGGTGAAATTCCATA
TTTTAGTCACGTGACTTTGGTAGGAAATCCTTCCAAACCTAGGCTTCACT
TTTTGATAAAAGCCGCAAATCTAGCCCTTCAGGCTTTACAGATCTGTGTG
CACCACTGGCCGACCACTGGCGAGTCTTCCTACATTTTCAGAAATATTCA
ACCCAATACGTCACTTTTTCTATTGTTTAAGTGACGTATTGGGTTGAATA
TTTTGAAAATTCTCGGAAGACTCGAAGACTCCAGTGGTGCATATCATGAA
TTAGAGAATCGTGTCATCCAGTCTATCAAAAAACCTTAAGTGGCCTCCAG
GCTAGGTGTAATCGCGCTAAGACTCCTTCTACATTTGATCGATTATACAC
CCATAGTAAGCGAGACAAAATTTGGTGTTATGAAAAAACTTCGAACTAAA
AAAAAAGTTGGTACTATAAAAAAAAAGTTGGTATTATAATAAAAAAAGTT
GGTATTATAATAAAAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNATAAAAAAAGGTTGGTATTATAAAAAAAGTTGGTATTAAAAA
GCCTTTTGGCGCGCCATACTTCTTTATTAAGAAATTACCTATAACCACCA
TTTCGCAACTAACCGTGGGGAATTGAGATTTTACGGAAATGGGAATCCTC
AAATCGAATAAAGCATCTTCTGAAAATTTCATTCATTCTTCCCCATACAT
AAATGCGAAAATGAAAAACAAAGAAGCTTCCGTTTTCTGATCGCCTTTTT
AATCTGCCATGAAGTGTTATAAAATTCCTTATAGAAAGACATATTCTTCT
ACAAAGGAGTTTAAAAAAAATGACGTAGAAAAAAGTTGTTAAAAAGTAGT
AATTTTATCTTAACAATTTTGTAAACTACATCACAACCACGGAGCGCGCT
GACTTTTAGTTTTATGACTTAGTTCTCACTTGTTTGGTTTCCGTAATAAA
AAGAAAGTCGTTATTGTGAACTTTGAACATGCTTAAAATCGAGGTACTTC
CACTAATTATCCTTCAATCCAGTTGATTATAAATCAAACATAAATAATAA
CCAGGATGTTTTTCTACTTTAGTAATATTTATGTTAGTGAATGTTTGACT
GAAACGATATAAAGAATATATACAATGAAGGTCATATATCTCTACTTAGA
ATATTAAATGAATAATGGTCATTAACGCAACCATCCTGTTGTTTTTATAT
TGTAGGTACTAAACTTTGTACTCCTAAACAAGTTTAGACGTATGATGGCG
CATAGGCATACAATCCTTCGCCTTTCCGAGCAAAGACTGGTAGTAAGGAC
CAATGCTCTGGTGAGGGTGGAAACTGCCCCCATTTCTATTTCTATAAATT
GATCCAAAGGGTACATATGTACATTTTCCCGGATGTACTAAAAAGAAGAA
AAAAAGAAGAAAAAAAATTTAATACAATTTAAAAGCACTAAAAAAAGCAA
CATAAAAAATTGGTTGCTTTGTTAGGCCTTTTCACTAACTTTTCAGACTT
TAGGACCACTTTTTTGGATTCTACACTCAAAAAACATAAAATATCAAAAC
TTGATTAAAAATTTTGACCCAGACCAAATACAAACTCTGGATCCCAAGTG
TGTGGAAACCAACTTACTTAGGATTCCATTTCATGTCCATAACTTCACCT
GTATACTTTCAATCATAAAAAAATGATTGAGATGTATTAAAAAAAGGCAT
TTCACACCATTTTCAAATTTTTATTTTTATTGTCACTTAAAAGGGTTCAA
TGGTGAAAATTACAAATAGAGCAAAACGGAGATTGATTAAACGCAAATCA
AATGTAAATGCAAAGAAGTTAGTTTTTGATGCTGTGCATAAGAAAGATGT
TTCATTGAAAGTAAGTAACTTTTCAATTCCCCTTGGATTAAATGTAAAAG
CAATTGTGCCATTTTAGTGTCATAGCGTCAGCCCCCCCTGCTGGTTGGGG
GGGTTTACACCCTAAATTTTTCCCAAAAAAGGAGGGGGCTGGAAGTACAC
CACTTTTTTGGGGGGACCTATGTACTTGGGGGGAGCTAAAATCTCATCAC
TTTATGTGGGGGCTGAAATAATTCAGCTTAATAGTTGGCTTCAATTACTC
AAATTGAAGCTCATGAATCTGAAAAATTCTCGCATGCGGCGTAATATTTT
TATAGAGAGTGTGAAAAATATTTTATCTTAAACTTAGAACTGAACGCAAT
TAACATTGGAAAACCCTTTTTTACTGGATCTAATTTTGAAAGTGTCTAGG
GTCAAAAGTCCTGGGGGCTAACAAAAAATTCATAAATCTTTGGGGTGACT
TAAAACTCAGGGGGGACCTAATTTTTGCCTGCGACCTAAACCCAGGCTGA
CGCTATGATTGTATGATTTCTTGAAACTTGGTGAACATTAGGAAAAGCGA
TCTCGAATACATTTTATAAAATCACAGTAAAATACTAAGAAAGAGCTTGA
TAATGGAACTTGCTTCGGGGTCAAGATTTTTTTTAAATCTCATTTTGTTT
GGAGCTAAATTCGATTCTCCATTCTGAATATTTCACGGTTGAACAAAATA
TTATTTTTAACAGAAAAAGAAATGATATTTTATAAAATACAACCAAAGCA
TGTACACAATGTGATGATTTTTAAATTTTTAGGAGAAACAAGAGATTTTA
TGGGCAGCATCTGAATGTGATCGAGAAGATATTCTAGAAGAATTACTACA
AGATACACAGATTGATATCAATTTGACTGATGAGGTAAGTATTCATAAAA
AGCTTTGTCAATAATTATGAAGTAAAAAATAATTGAAAGTTTTTAGCAGT
TGTTCATTAATGTGTAATTTATAAGACCTACTGATGCAATAAAAAACTCA
AATCTAAATTTCAGGGTTTTTTGCTTTTCTTTTTTTAGAATGGCCACTCA
GCCATATTTCACGCAGTTATCAATGGCTCCACAGACTGCTTCAATACGTT
GTTGAGCAAAAATGCTGATGTGCAATTAAGTGATACTGTATGTTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNATAGTATATTGTATTATACAGGGGGTGTCAGGGTGTAT
TTGTGAGTTTGCTGGATAGTACTGGATAGTATATTGTAAAATATAGGGGG
TGTTGGGGTGTTTTGGGGAGTTTGCTGGCTAGTATTTTGTACATTTTGTA
CTATAGGGGTGGGGGGTGTTTAAAATCGAAATTTGCTGCAAAGTACTGAT
ACATGCCGCTGTATTGTACATGGACCCCCCCTGTTCTACCCCTAATGTAG
GTCATAGGCAAATGGAAAGTTAAACATATGTAATATATNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGTTTTGTATTGATGTACACGTTTTTTTAT
AAGAATAAACTAAATAAGAACATAAGGCTTTGATGTTCAAAATGTTACGA
ACAAGTTAAGAACATTTTAAGGCTTTGTGGACTCAAAAAGAACCTTTTTC
TTAGAAAAATGGTCAGAAATATTCACAAAATGGTCAAATAAGAACATGTT
AAGAACATTTTTAGGCTTAGGCTTTTAAGCATGCAATAGGCTTCAAAAAA
TTTTGAATGTTCTTATAAAAAACGTGTTTTTTTTCTTGGTGTACATTGGA
ACAAAACTTGAAAAATCAAGAAGCGTCTTATAAATGATAAACTTGAAAAC
TCGAATTAAAGAGAGCTACATATCGTGTTATTATGCTGTAGTGTAATATT
TAGTTTCGTGAAATGAGCTTTTTACAAATGAAATCCTCAGAACTAGGGAA
AAGAAAAGAAGTTTTTGGATGCCAGTTGTAGAAAAAGCTTCGAAAGAACC
TACCCAATACCATACCATCGCACAGCAAAATTTAGCTTGGTTCCCTTCTT
TTCTTAGAAAGCTTTTTTTGTTTTATGTATCAACTGTGACCCCTAAGTTT
GGAATAAGAAATTTCCAAACGAGTACCGTNTTCAACTGTGACTCCTTAGT
TTGGAATAAGAAATTTCCAAACGAGTACCGTAATACTATCGACTACAGAC
TCTTGTAACACGTACAGTAATGGACTCGAAAACATTTAAATTTGGAATGA
AAAATGTTTAAACAATTATGAAAACACTAAATATTAAATTGTTCTTCTGC
TAATTTGTTTAGACTGGACGAAACGTGTTGACACATGCAGTAGAAAACAA
CCACCATTCAATCGTCTCCAAGGTTCTCAAAGTTGTCACTCCAAATGTAA
GTAAAGGAATGGTTCCAAATGGGCTCTTCCAGAAAATGTCCGTACATGGG
GAGGGTGGATGATATAGTATCTAGGGGGTAAACTTGTTCTGTTTTTGGGT
AACTGTGCTCTGTTTGAGGGTAATTTTGAATGTCCAGGGGGTGAAGTGGT
GCTTGCCTGGGGGTTACACCTGCTGTCCGGGTCAAAAGTCACAATGTCCA
GGGGGTAAATTTCCAAATATCCAAATATCCTCCACCCCACGCCCCATATT
AAATTTTTTTTCTGGAAGAGCCCAATACAGCTAAAACATCTTGAAAATTC
TTTTGTAGTGAAATAGCAAAGTTGTTTTTATAATAAACGAGTATCTATAT
TTAAGATTTCTGTATATTTTCTATGAAAGGCCGAAAGATTTTGTTAGATT
TCATTTCTCAAATTTTGCATCTTATGAAGTTAGGCATTAAACTTTTGAAT
TAAAATTTCACAATTAAAATTGGTGTACCACCCCAATAATGGCAATTGGG
GGTATGTAAATTCTTATTTGTATACATAAATTGTACAATATTATCTGATA
AACTAATAGCAAGGGCTCGGACCCCTCTATGGGGGTCTACGCACCATGCA
TATTTAGGATATATTTTCTTTATAGTTGATCGATGATACAGTAGAACACT
TGATATCAACAAGAAGTAGTAAACTTTTGTGTAATTTTGCAAATTATGAA
GAAGTTGATTTGTCAAAATTTGCTGGTGTTACTGGTTTCCATGATAAAAA
GGTTGGATATATATATATATTTTTTTTTCGGTCACAGCTGATGATTTTAG
TTTATATTATACCTTTTGAAGTTTCTGCATGGCCAAATTTCAGAGAAAAA
TTTTACTCCCCATGTTACAGAGGTGTTTTTTGGAAAGTCAAACCCCCTGG
ATTCTTGCTGAAAATTTAGCGACCTTTCTATAATTTTTGATAAATTTTAG
AGACGTACCCCGCTTGGAATTTTTTTAAACTAAATTTTCACGGAATTTCA
CAAACCCCCCTCCCTCTCCCTAAATTTTCCAGCTATTTTTTAAGGGTGTC
CTTGGATGGAAAGTTCTGACCTCTTAAACATAGAGGGAAACATTTTTTCT
CTAGAATAGCCCATATTTTTCTTCCTCTATTCTTGTTTTCTCTCTTTATA
TTGGTTTAAGTTTGAAAATTCGTTCATTACGGTCATTATTAAAAACACTA
AAGACGATTGATCCTAAGAAAGACAAAAATAATCAATTTTTGCATTTACT
TGAAATTTTTCATTCATAGAGGCAGTATTCAGCACTTCACTATGCCTGCA
AGAAAGGATATATAACTTCAGCAGAAAAATTGATCAAAAATGGAACAAGA
CTTACGAATCGAAATGTAAGTATTCAAGATTCGATGAATATCCGTACAGT
CAACTCTCTCTAATTCGAACCTCCATTATTCAAATCTTTCTGTAATTCGA
ACTGAAATATTAATCCCCTCAGCTGGAAAGTGGTTTAAATTACTCTCTAG
TCTGTAATTCAAATTTTTCTCTAATTTGAAGATTTTTAGTGGGCATTACC
TTTCAATGCCTTTATCTGCAGCAAAATCGACTACTTGAAAATTGCATTTT
TTCGTCCGTTATTTTTAGGCCAAAGAGACACCTTTGTTACTTGCATATTC
TCAAAAGAACTTGGAGATTATTTCAATGCTTTTGAATCATGGCGTAGTAT
TGAGCAACAATATGGTAAGATGGACTCAATAATTTTCGGCAATTCTTTAC
AGCTTACTGTTTCCCTTACTTACCCAGCTGGCACATAACGCTGTTTCGAC
GTTTATCTAATGTTCACAACGTCAATATAACGTTAGATGAACGTTGAAAC
AACGTTGTGTGCCAGCTGGGTAAGAACTTCTATTATTGGAATATGTCTGT
AATTCGAATTTTTCTGTAGTTCGAATATTTCTGTAATTCGAATATTTCTG
TAATTCGAATCTTTCTGTAATTCGAATCTTTCTGTAATTCGAATCTTTCT
GTAATTCGAATCTTTCTCCAATTCGATGAAAGCTCTTGGCTTCTTAGTTA
GAAAGAGTCTACTGTAGAGTCTACTGTAGAGTCTAGATTTATACTGATTC
TGAAGTTTGAAAAATCGAAATGAAATCAATCAATTATTTTTTTGCACCCA
GATTTCAAAAACCTATGTGGGTTAAAACTGTGGGATATTCTAAATCGCCT
CAGTCACTCCACCTTCCTCTAAATCTAAAGTACAAGTACATAAACTCGCT
ATTGTCAAACGCATGACTGCAATATGATCTTAATTTTTTTTCTGTTTCTA
GAAAGCTCTATCGGGATTTTCGTATTGGCTCAACGGTAAATCAGGCGAGT
ATCAAATCCTCATAAAAAATCCATCGGAATTTCAACACGCATTGTCTCTT
TACAAAGAGAGGTTGACAATTGAAGACCAACAATTATTCATCATTTTCAA
TCGTTTAAAAGAGCAGCCTGACCATCCTGAATTGGTGCATCTAGCCTGTG
AAAAACACCTGACTTTCATCGAATGCAGTCTAGTGGATATACCTTATATG
CCATCAATAAAAAGCCTTGCTTTATATTCGACAACTACGGAAAGCTACAC
GAACTTAAGCCTGAGAAAGATCAAGTCTTTGGAAACATTGACAATCTATG
ATTCTAAACTAACAAATTTACCAAGTAACCTTCATGAATGTAAAAACCTT
CGTTATCTGAACATCAACAATTGTAAACGATTGCAACATTTACCAACTTG
GATCAAAGACCTTCCACTTGAGAATCTCATNTACACACTTAATCACAGAA
GGAGTCGTACAACATTCGTCCCTTGAGCAAGCCTGGTGTGACATCGAACC
TCTATTTCGGAGTAAGGTTCTCACACTGTTTCGTCAAGCTGGTATATTCA
TTCGGCTCTCTGACGATGCCGATTTAGTGCCATGTCGNACCACTTGAGAA
TCTCATTCTTAATGACAACAATCTCAATGAATTACCAGAACTGCTCCCAA
GAACACTACATGTTTTGAATATCCAAAACAACAATATCAAAAAGCTTTCA
CCGTTACTAGCTCAATGTGAAAAACTAACATCAATCAATCTACATGGCAA
CCCTTTGGTGTTCCCAGAACTTTCAATCGCAATCAAAAGCAAAACATCTG
ATTTGTTAGCTTATTTGAAAGCCTTCTTAAACAACACCATACCCAATAAA
ACGCTTAAGATCTCCTTGGTTGGACAAGAGCAGGTTGGCAAATCTACCCT
TCTACAAGCTATCAAATCCAATACAGGATTATGCGAAGATACAAGCTCAA
TCATCAAGACGGATGGTCTTGAAATCTCAGATGTACAATTAAGGGATTTG
AACTTTCGTATCTTTGATCTGGCTGGTGATATCGATTTTATCGAAACTCA
TACAATGTTCATATCGGAAGGAACACTCTTTCTAGCAGTGTTTGATCTGC
AGATGTTCTCTTTATCCCTTAACACGTTAGACCCCTATGCTTTTGGCCGT
ATTGAAGTCTGGCTTTCGTCTATCTTCGCACAATCTCCTAATTCTAGAGT
CATCCTAATTGGAACCCACGCCGATGCTGAAATGATTACATCATCCCTTC
TCGATTTAACATGGCACAAAATCAAAACTATTTTGTCATCAGCACGTGAA
GCACACGTGGCAAACTACGCTAACGATTTTCAACACAAATGTCTACTTTG
TTCTGACACGTCATCATTGAATCGTGTTTCAACAGATGGAGGTGCTGGTT
ACGTCTACATTGAATCCAGTGAAACTACAAATGATGAATCCACTGAATCG
ACAGATGGTTCTAACGTCACATCTAATAAACAGGAGGACAATCAAAATAT
GGTTTTTCCTCACATTGTGGGTTACTTTGAAGTGAGCAGCACTAAACAAA
TCCCCCGCAAAGTGTTTTCAAACAAAAACACCAGTATTGAGCAACTCAAA
GATTGTATCTATAATACAGCACAAGATATGTTATCCTTGAATCCCTTCAT
ACCAAGGAAATGGGTGGATCTACGGAACTACCTTACTAAAAAAGCGGAGA
AGCAATTCCCAATCATTACCTACCAAGAATTGATGGAGGTGTCACGTGAA
TGTGGTTTTAGCAAATCAGATGACGAGTTGAGTCCATTCTTACGTCATTA
TAATTCTTGTGGTGAACTATTATATTATTTTGATATAGACGAGCTTAATG
ATATTATTATCATAGATCCACAATGGCTGAGTAATCAACTCCGTGCAGTA
ATTAGTTTCCGTGCTACACACTTAATCACAGAAGGAGTCGTACAACATTC
GTCCCTTGAGCAAGCCTGGTGTGACATCGAACCTCTATTTCGGAGTAAGG
TTCTCACACTGTTTCGTCAAGCTGGTATATTCATTCGGCTCTCTGACGAT
GCCGATTTAGTGCCATGTCGATTACCAGTGGGCCGTCCTTCAGAAGATAT
GTGGGCGCCTGATTCAGAGAACACAGAAAACCAAGTATCCTACTGTTTCA
AATTTAATAACCTACCAACATCATTTTTCTCGCATTTAACGTCACTTGTC
GAAAGCCGTAGAGAGGAATTTAGTGTCGGAAAGATGGCACCAGTTTACTA
TAGCAACCATATTGTTTATTTTACACAATCATTGGGAATACCATGTGAAG
AACACACGAAAAAGAGTGAAATAAACTTGAGTCGATTGTCAACACATGAT
GCAGTTAATTATTTAACGAGAGGTGTAAAATTATCACGATTCTTGTCACT
CGATTCTGATTCGGTTCAAAGTTTACTTGAAGTTGGTCGGAACTCATTTC
GAATTTCAATGGCCGAGTTTTCTGATTTTAACGAAGTTGTGGTGGATGAG
AGTGAGTCGAAACCAAATTTCCGACATCGAATTCATTTCGAATTATTACC
GCATTTGAAATGTATTGTAATTAGCATCCGTGGTCCCAAACCATGTTGTT
TAGCCCCAGAAACAATCGATCTTTTGAACCGTGTTCGTCTGACACGCTAC
AATTCTGTCCACACCGAGTTCTTCTTTTATTGTCCCATATGCATCAAGAA
AGGTATGCAGAATCCTTCAAAATTCGCTTTGTCGGAGTTAAATGATAGCG
TGCCAATTTGTGAAAAAGGTCATGATTCTAAAGATTGGAAAAACGTGCAA
ACAGGTGTCTGTGAGTATGACTATAAGTTGACAAATCGTCAACTAATGAG
CACATTAAATGACTTTGATTGTCCGAAATTGTTTCTCATGATGCCTGTTA
ATTTACATGGAGTTGGATTTCGTGAATTTTATACCTTATCATACCTCAAA
GAAGGTTACTCCGTACATCTTTTATGTGAGTATCCAGATTGTTGGCATTT
CTTAACAACACCCGGATATCGTATAACACGACCTAAAGAATTCGTTAAAA
AATACGGACGCCGTCTTCAAACGATGTTAAGAGTGCTATCTAAATTTGAG
ATTCCTGCTCGAATTGCTGGATTAGCAGTTGAGAGTGCGAACAGTCTTGC
AGACTTGTTGGCTTCGTTGAAAGAACTTGCCAATGATCTAGATGAGCATT
TATCCAGTTTTTCGGAAGACTGGTCAAATTTTCAAATCCGTTCTAATTTG
GAAGACAGTTTGTGTTATTTGAATAGTCATGATGGTTTGAATCGTCGTGA
ATTCCGACGATTTTTAAATAAAGCTGACGAGGAAAATCGTTTTGGAGACC
TGGTACCGAAGTTTGTTGGAGAACGTATTGTGTGGTTGTGTGAGGCGCAT
TCCAAATGTGAAGACCCTAACCGAAAACAATTTTTCAAAAGCTAGTTTAT
TTTATAATATATTTGACAGCCTTATCTGCTCAAATGAGCATTGTGTCAGC
CTTTAAATTCGAAGTGTCAATGACGCAATTTTTTTTCGCAATTCACACAA
TTTTTGTTCACGAAAAGTTTTCCAATTCACGCATTCGCGCATATTTTTTT
ACGCCTTCACGCATTTGCGCAAGTGAAAAGGCCCATTCACGCAATCACGC
AAATCTTTTTTCAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041631XLOC_041631Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066563-exon-scaffold_456-1575043694:497073..497366TCONS_00066563-exon-scaffold_456-1575043694:497073..497366Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1575043694:494157..494273TCONS_00066563-exon-scaffold_456-1575043694:494157..494273Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1575043694:493283..493384TCONS_00066563-exon-scaffold_456-1575043694:493283..493384Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1575043694:493030..493128TCONS_00066563-exon-scaffold_456-1575043694:493030..493128Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1575043694:490721..490804TCONS_00066563-exon-scaffold_456-1575043694:490721..490804Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1575043694:489966..490091TCONS_00066563-exon-scaffold_456-1575043694:489966..490091Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1575043694:489352..489447TCONS_00066563-exon-scaffold_456-1575043694:489352..489447Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1575043694:489003..489098TCONS_00066563-exon-scaffold_456-1575043694:489003..489098Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1575043694:484701..488415TCONS_00066563-exon-scaffold_456-1575043694:484701..488415Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1510915933:497073..497366TCONS_00066563-exon-scaffold_456-1510915933:497073..497366Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1510915933:494157..494273TCONS_00066563-exon-scaffold_456-1510915933:494157..494273Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1510915933:493283..493384TCONS_00066563-exon-scaffold_456-1510915933:493283..493384Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1510915933:493030..493128TCONS_00066563-exon-scaffold_456-1510915933:493030..493128Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1510915933:490721..490804TCONS_00066563-exon-scaffold_456-1510915933:490721..490804Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1510915933:489966..490091TCONS_00066563-exon-scaffold_456-1510915933:489966..490091Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1510915933:489352..489447TCONS_00066563-exon-scaffold_456-1510915933:489352..489447Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1510915933:489003..489098TCONS_00066563-exon-scaffold_456-1510915933:489003..489098Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1510915933:484701..488415TCONS_00066563-exon-scaffold_456-1510915933:484701..488415Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1491911889:497073..497366TCONS_00066563-exon-scaffold_456-1491911889:497073..497366Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1491911889:494157..494273TCONS_00066563-exon-scaffold_456-1491911889:494157..494273Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1491911889:493283..493384TCONS_00066563-exon-scaffold_456-1491911889:493283..493384Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1491911889:493030..493128TCONS_00066563-exon-scaffold_456-1491911889:493030..493128Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1491911889:490721..490804TCONS_00066563-exon-scaffold_456-1491911889:490721..490804Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1491911889:489966..490091TCONS_00066563-exon-scaffold_456-1491911889:489966..490091Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1491911889:489352..489447TCONS_00066563-exon-scaffold_456-1491911889:489352..489447Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1491911889:489003..489098TCONS_00066563-exon-scaffold_456-1491911889:489003..489098Clytia hemisphaericaexon
TCONS_00066563-exon-scaffold_456-1491911889:484701..488415TCONS_00066563-exon-scaffold_456-1491911889:484701..488415Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_456supercontigscaffold_456:484701..497366 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.43747	2.36832	1.4645	1.1075	6.67924	4.97029	7.50605	7.589	2.34608	5.09247	3.67403	1.40875	3.61909	3.0708	4.88285	6.12875	3.38109	2.89666	3.06215	3.02361	1.93797	2.09409	1.5705	2.22702	4.21473	5.57199	4.04195	4.24343	3.56538	3.3705
Blast
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BLAST of TCONS_00066563 vs. Swiss-Prot (Human)
Match: LRRK2 (Leucine-rich repeat serine/threonine-protein kinase 2 OS=Homo sapiens GN=LRRK2 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.033e-17
Identity = 64/215 (29.77%), Postives = 107/215 (49.77%), Query Frame = 3 
Query: 1728 LNIQNNNIKKLSPLLAQCEKLTSINLHGN-----------------PLVFPELSI-----AIKSKTSDLLAYLKAFLNNTIPNKTLKISLVGQEQVGKSTLLQAI----KSNTGLCEDTSSI-IKTDGLEISDVQLRDLNFRIFDLAGDIDFIETHTMFISEGTLFLAVFDLQMFSLSLNTLDPYAFGRIEVWLSSIFAQSPNSRVILIGTHADA 2291
            L++ +N +K++ P +   E LTS+++  N                  L   EL +      I  K  D++ +L+  L   +P   +K+ +VG    GK+TLLQ +    KS+ G+   T  I +K   ++I D + RDL   ++D AG  +F  TH  F+++  L+LAV+DL      ++ + P        WL +I A++ +S VIL+GTH D 
Sbjct: 1250 LHLSHNKLKEIPPEIGCLENLTSLDVSYNLELRSFPNEMGKLSKIWDLPLDELHLNFDFKHIGCKAKDIIRFLQQRLKKAVPYNRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKP--------WLFNIKARASSSPVILVGTHLDV 1456
The following BLAST results are available for this feature:
BLAST of TCONS_00066563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRRK21.033e-1729.77Leucine-rich repeat serine/threonine-protein kinas... [more]
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