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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066510 ID=TCONS_00066510|Name=TCONS_00066510|organism=Clytia hemisphaerica|type=transcript|length=502bp
CATAATTTAAACACGAGGTCCTCTTACTACACCGTAGTGTATCGCTTGTA
CATTGAGATCAAGAGTCACAAACCTTGGTTACTCAGATCAGAATCACCCA
CGCAAACTCATCAAAGACTCAAGACTATTTTGATCCATGGAGaTAAAACT
ATAAATTCTTGAGAAAACGACAATTAGAAATTACCGCTGGAGAAAATACT
TATTGCACCCTTCATAATCGACACTAACATGCCTTCTGCTAAATGGATGA
GAAAAAAACTTCGAGAGACGATCCCGTCCAGTGCTAAACAACAATCTTGT
AAATGTTTCGAATTATGGAGGACGTATTTCCTTCAGGGTACGGACAAAGA
TCGGTGGAATGATCAGAACGGAGCCATTGAAAAATACCAAATGTTGATTG
AAGATTTGAAATCTACGTTAGAAACAAGTTTTTCTTGTACTGGAGAAAAT
GTGCGcttaaaacaaaatcaaaaggtaactttcttgattttttgaagaac
GA Run BLAST on NCBI transcript from alignment at scaffold_456:417525..423132+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066510 ID=TCONS_00066510|Name=TCONS_00066510|organism=Clytia hemisphaerica|type=transcript|length=5608bp|location=Sequence derived from alignment at scaffold_456:417525..423132+ (Clytia hemisphaerica)
CATAATTTAAACACGAGGTCCTCTTACTACACCGTAGTGTATCGCTTGTA
CATTGAGATCAAGGTAAGTCATTTAGTTTTAACCAGCGCTGCAAATCCTT
TTATGAGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttagcctgag
cagttccttaacaattccttattttttggaccattttcagcctcgagttc
cttataaacgtgttccttataaaaaaaaaaacgtgtattatgtACTATCG
GGTACCTAATACCCgggggtttggaaaaaatctcaaaacttgataaaaat
aaaaatgtcctggctggaaaatttttgaaaagaaggctaatacagcagaa
ttaggacaaaagagggaactttcaaaaacattttcccaaaaattaataag
ggttggaataagaatgtcctgggtggaaaattttcaaaaaattaattagc
gggagaagggacggctattaagtacccgagagtaggccAGGCTTGGATAA
GTAAGAAACTGTTGATAAACTGTCATATAAATCTTTATTGGTTAAGATTC
CTGACATGAAAATGTTCGTAAATTACTATtcctttgaaatgttttttttt
tcctatcATAATGTAAATAtaaactttacttttctttttactttaaaGAG
TCACAAACCTTAGTTCTCAGATCAGAATNCCTATTATAATGTAAATAtaa
actttacttttctttttactttaaaGAGTCACAAACCTTGGTTACTCAGA
TCAGAATCACCCACGCAAACTCATCAAAGACTCAAGACTATTTTGATCCA
TGGAGGTACGGTACAAATAATGCTTCGACGCACAGTATGAAATCTTTTTT
AAGAACCAATTTACTTTTGTTGAGGCCCAgctgttcttctttttttgaca
cTTTAAACCTCTATTTGTTCTTATCCTTTTTTCATTTCTTAGGTAAAATG
GGGTTATTTTTATAGGCTTTAAACTCGACAATCTTTGCTTTGGCCCTCAA
TTTACTTGAAAGTCAGCAATTCTAGGATCAGTactattcttaaattgttc
tattttttgacgattttgagcCTCTATGAAATTACTAGCCGGCCCGGCGT
CGTTCGAGACGACTCTTTACCATGATAATTAAGCTTGCTTCGCTCGCTGC
TATTTTTGAGACATTAAAGGGGGTCCGCATCGaatgtattttttactttt
atgagAAATAGGTAACTGTTTCttgtattttctaaggaaaaggAACAAAA
ATACTTTCTTTATTTAAAACATTCTaatgtatttcccaaggaaataAATG
TAGAGAAAATTTCTTACATATTTGAGGGAAAATTaactaaaaacaaattt
gttatattttcaaGAAAGGAATCAAAGGAAAATcacccaaaataattttc
ttgaatttggcAAGGAAAAAATCCTAAAGCAAATTCTTGTACTTTCTAAG
GAAAATCGGCCAATACAATTAGacaatttttatataataattacTGAAGT
AATTTTTTCGCTACTTTTACCaagttgatttttcaagaaaaatcgcTCTC
TGTCTCGAAAAAAGATAAAGAATAACTATTTTGAAAGCTcattgaataga
ccttttcataaattacgtcacgaacatcacttacctcgttttgaagttat
tgccatggtgattaactcccagcggattctattaaaactactttctattc
ataaataaatcatttaatgtctcatgggacataatcaccatggtaactgt
ttgaatacgaggcaagtgatgttcgtgacgtaatttatgaaaaggcctat
cgAAACTACCATTTTTAATCTATTTACAAGGAAAGAAATTTGATCGCAAA
CTAAGAACAAGCTCGGAACAATCTCAGTGTAACAGATGGCATAATTGCAT
TGTCTGTAGATCCTTTAAGTAAATAAAGAATACGTATAACAACATGATAA
GAACGTTGGAAGTCTAAAAGTTTCAAttgcacgcttttttttataagaat
ggtgtaaatccatttcataaTAGAtagtcttaacttttttgggaaaataa
tcctaaaatattcttacaacattcttaggttaggatcctaattgacaatt
tataatttaaaatggtctaaaaatggcTTTCTTAGCTTAAGTAGCAAAAT
TCtatatgatggtgatattcttagcatattcttaattttttggccaattt
catcatgcacattcttataaagtgtattcttataaataaaaaaagcgtgt
aaaagtcgacaagaaaccaaaatttaaaattgcatGGTTCTAACAAAAAA
GCGTGTGTTTGCATTGGAATTCACACTTGGAATTCATTTAGTAAAACGAT
ATACAAAACCTACGCTTGGTTGACAGTTTATTACTACTGTTTCATTTCAA
TTCTTATTGATAGAGAAAACGGTCACCATAGTTACTCAATacgaataaaa
aaacaacacattttaaataaattatcatagtgaaataatttttattgaaT
TCCCTAATGGGTCGAGAAAACCATTTTGAACTGTAGCGCTGTGTTTGAGG
TTACCCCTAGTAACCAATAAACATTATCACATATATTTATTTTCCTATGA
TTGTGATGAGACCTTTCAAGGNGTAAATATTAtcacatttatttattttc
ctaTGATTGTGATGAGACCTTTCAAGGAAAAAATCAGTATATAGAACATT
GTCTATAACTAGTTTCAGGAGCGGCTGACGCAGACAgtaaaataaagaga
aaaattcatctTTGGCGCaaggtttttaatatttttcaaaaaaatacttt
cGCTACCCACTCCATTAGCTTTTCTCTTAGATTTTTGGAGAGTTTATTTT
TGTGTGTGGTGAATATCTCTAGATGAAATGTTACGTTTCAATAGGCTATA
TTGATGTGATTTATTCCGGTGGATGATTGGCTGAATGCCCTGTGGTTTTT
TActgtttgttttgatgaattttgTCGGTACTTTTACTTAggaataaaat
aatttataaacaTTGTTTTTGGGACAACAAACTAATGTAAATTGGGATTT
GCGAGTCGGTTATTGGTTGAGTTTCTCTTCAGGTACGGTTGAGCAatcat
gaaattaaaatgataaACTTCATTATAGGAGGAGAAAATCGAAATATCTT
TTCTGTTAAGTTTTTCTATCGTGGCTTGAGTTTGCACACCGGATATGGTT
TTATACTTTGTATTATGCTTTCGGTGCGACACATTTTATGACGGTTTTAT
CCAAGGTTGCTATGCTGTATGTATATTTGTTCGTTCGTGTTCTTTGATGA
ACTGTGCGACTTcctaaaacttttgttttgatttctcaTTTTGTTGTTGT
AGCTTTTGGCTGGTTATAAAGTGTCTGCTTACAGAGAAATCAAGATGGTA
CATGTTCATTTTGCGTTCCCAAAGTGCATCATTTTTCGTTTATGAATGTT
AATCCAATTTGAGTGAGATGATTGTATTTTcaagtattatttttttatta
ctttttagaTAAAACTATAAATTCTTGAGAAAACGACAATTAGAAATTAC
CGCTGGAGAAAATACTTATTGCACCCTTCATAATCGACACTAACATGCCT
TCTGCTAAATGGATGAGAAAAAAACTTCGAGAGACGATCCCGTCCAGTGC
TAAACAACAATCTTGTAAATGTTTCGAATTATGGAGGACGTATTTCCTTC
AGGGTACGGACAAAGATCGGTGGAATGATCAGAACGGAGCCATTGAAAAA
TACCAAATGTAAGCCATGCATATCTCTGTTTATTCTATTTCAATCTTTGC
TACCTTCCTACAGTAAgactttacacgtttttttattagagcaTCAAacg
tttttgaagcctttcggatgttcttaacttttctagttttatgcctaaaa
atgtttttaacatgttcttattttcaccattttatgagtatttttatcca
ttttcctaagaaatcgggtgtatgttttagagtccgcaaagccttaaaat
gttctgaacttgttcttaatattttggccatcgaagccttagttcttata
tagtttgttcttataaaaaaatgtgtaccccTTCAGAGCAGGGAACATTT
GGACTCGCAATTTTCTTTAACTAAATTGTAACTTTTAACTTTAGCTAATT
ATATTTTCATCAGGTTGATTGAAGATTTGAAATCTACGTTAGAAACAAGT
TTTTCTTGTACTGGAGAAAATGTGCGcttaaaacaaaatcaaaaggtaac
tttcttgattttttgaagaacGACAATTTTTATCGATTCGAGGCTCTCCG
GCCCTCCCCAGTCTTTTAGAATGCACAACgataattatttaaaaatcgTC
TTCCAAAATATCCTaatcaatttttcagtttttaacaattgctgattttt
ttatttattttttcaggatACCGTAAAAAACATCATTCGTTGTTTAACAT
ATCGTATCGATGCCATAAGGGTAAGAAAATATTGTTTTACGAATACAGCA
AGTCTTATCAAGGAGCTAATTGCACCcattaaaaaaacatataaattttg
agtatttttttcatttttaagtatagcAGTTACCACCTAGAGATGGAGTC
TTTTCCCTCTCAATTTCACACTAGAAATCGANTGCTACCTTCCTACAGTA
AgactttacacgtttttttattagagcaTCAAacgtttttgaagcctttc
ggatgttcttaacttttctagttttatgcctaaaaatgtttttaacatgt
tcttattttcaccattttatgagtatttttatccattttcctaagaaatc
gggtgtatgttttagagtccgcaaagccttaaaatgttctgaacttgttc
ttaatattttggccatcgaagccttagttcttatatagtttgttcttata
aaaaaatgtgtaccccTTCAGAGCAGGGAACATTTGGACTCGCAATTTTC
TTTAACTAAATTGTAACTTTTAACTTTAGCTAATTATATTTTCATCAGGT
TGATTGAAGATTTGAAATCTACGTTAGAAACAAGTTTTTCTTGTACTGGA
GAAAATGTGCGcttaaaacaaaatcaaaaggtaactttcttgattttttg
aagaacGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066510-exon-scaffold_456-1491911889:417525..417587 | TCONS_00066510-exon-scaffold_456-1491911889:417525..417587 | Clytia hemisphaerica | exon |
| TCONS_00066510-exon-scaffold_456-1510915933:417525..417587 | TCONS_00066510-exon-scaffold_456-1510915933:417525..417587 | Clytia hemisphaerica | exon |
| TCONS_00066510-exon-scaffold_456-1575043694:417525..417587 | TCONS_00066510-exon-scaffold_456-1575043694:417525..417587 | Clytia hemisphaerica | exon |
| TCONS_00066510-exon-scaffold_456-1491911889:418751..418829 | TCONS_00066510-exon-scaffold_456-1491911889:418751..418829 | Clytia hemisphaerica | exon |
| TCONS_00066510-exon-scaffold_456-1510915933:418751..418829 | TCONS_00066510-exon-scaffold_456-1510915933:418751..418829 | Clytia hemisphaerica | exon |
| TCONS_00066510-exon-scaffold_456-1575043694:418751..418829 | TCONS_00066510-exon-scaffold_456-1575043694:418751..418829 | Clytia hemisphaerica | exon |
| TCONS_00066510-exon-scaffold_456-1491911889:421533..421782 | TCONS_00066510-exon-scaffold_456-1491911889:421533..421782 | Clytia hemisphaerica | exon |
| TCONS_00066510-exon-scaffold_456-1510915933:421533..421782 | TCONS_00066510-exon-scaffold_456-1510915933:421533..421782 | Clytia hemisphaerica | exon |
| TCONS_00066510-exon-scaffold_456-1575043694:421533..421782 | TCONS_00066510-exon-scaffold_456-1575043694:421533..421782 | Clytia hemisphaerica | exon |
| TCONS_00066510-exon-scaffold_456-1491911889:423023..423132 | TCONS_00066510-exon-scaffold_456-1491911889:423023..423132 | Clytia hemisphaerica | exon |
| TCONS_00066510-exon-scaffold_456-1510915933:423023..423132 | TCONS_00066510-exon-scaffold_456-1510915933:423023..423132 | Clytia hemisphaerica | exon |
| TCONS_00066510-exon-scaffold_456-1575043694:423023..423132 | TCONS_00066510-exon-scaffold_456-1575043694:423023..423132 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_456 | supercontig | scaffold_456:417525..423132 + |
Blast
The following BLAST results are available for this feature:
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