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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006663 ID=TCONS_00006663|Name=TCONS_00006663|organism=Clytia hemisphaerica|type=transcript|length=828bp
GTCGTGATTGTAAAGAACATCATTTGCAAGGAGAAAGGATCAATGGTTTA
TACCGAATCAACCATGACACTGATGGGAATGATGTCTCTGTCTATTGTGA
TCAAACGACTGATGGAGGTGGCTGGACAGTAATTCAAAGACGTGTTGACG
GAACAACCAACTTTTTTCGTAATTGGCAAACCTACAAACAAGGATTCGGT
CAACTCCACTATGAACACTGGCTTGGGAACGATAACATATATCTTCTCAC
CAGACCACGAGAAAGTCACTCTGAAATACTATTTGATCTGCAAAGAAAAG
ATTATGGTCGCAGGCAATATGCAAAGTATTCACTTTTCAGGATTGATAAC
GAGTATAACGCGTATAAACTCCATATCAGTGGTTTCTCTGGAAATATTGG
ACAAGATAAGATGAATTATCATAATGGAATGAAATGGAGCACACGTGACC
GAGATAATGATCTAAGACCAGCTCATGATTGTGCTTATGATCAGAGAGGT
GCTTGGTGGTATAACGGTTGTGAGACAAGCAATCTGAATGGAATTTATGA
CTCCttcaataaagagaaaaatccCGATGAAGCGTTTGGTTGGAATCCCT
TCCGTTTGGAATTCTCTGAAATGAAAGTTCGACGGAAGTAATTGCCCGTG
TGGTGCTATCCTTGATAAAGACATTGACTACATTTCTACGTTTCCCTCTA
AAAAGGGTACTAATTTTCTTGAGAGTAATTTTTATGTTATGAAATCAGCC
TTTCGGGTATTTTAGAAACCAGGAAAATAAAATAGCGGAGAAAAATAAta
tattgaattgaattttattGAACTGCGG Run BLAST on NCBI protein sequence of TCONS_00006663-protein >TCONS_00006663-protein ID=TCONS_00006663-protein|Name=TCONS_00006663-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
RDCKEHHLQGERINGLYRINHDTDGNDVSVYCDQTTDGGGWTVIQRRVDG
TTNFFRNWQTYKQGFGQLHYEHWLGNDNIYLLTRPRESHSEILFDLQRKD
YGRRQYAKYSLFRIDNEYNAYKLHISGFSGNIGQDKMNYHNGMKWSTRDR
DNDLRPAHDCAYDQRGAWWYNGCETSNLNGIYDSFNKEKNPDEAFGWNPF
RLEFSEMKVRRK Run BLAST on NCBI transcript from alignment at sc0000069:510914..513426- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006663 ID=TCONS_00006663|Name=TCONS_00006663|organism=Clytia hemisphaerica|type=transcript|length=2513bp|location=Sequence derived from alignment at sc0000069:510914..513426- (Clytia hemisphaerica)
GTCGTGATTGTAAAGAACATCATTTGCAAGGAGAAAGGATCAATGGTTTA
TACCGAATCAACCATGACACTGATGGGAATGATGTCTCTGTCTATTGTGA
TCAAACGACTGATGGAGGTATGTAGAATATTTAGACAATTCTTCTATTAC
CTTCGTTTTCTCCTTGATTTGAGCCTTATAAGCGTTATGTTCCTTTTCCT
GAGTCCTTGCACAGTTCTCCTTTTTAATTTTTTTTACTCAGGATACCGTC
TAGAGCATTGAGTTTAATGCCCGAAGGGCTAGAGTAGAATCTCTAACCTT
TCCCAGGAAAGAAAAAATGAAGCCTCTTATTTCCCATTCAGAACGCGTCG
CAATGATGAAAACAGAGTGTGTCTAGTGATTCCTTTGTTTTTGAGGACTG
CATTTTTTAAATCTAGCAATATATTTTACTTTCAATTCGGCGTTTGTGTA
AAAACCACGCGCATGGTTGTATTTCCCATTTAGAAGTTTCGAGTCAAGCC
CTTAGACTTGGAAGTCAATGGTCTAGAGTCCTTCCTCTGTTAGTTACTAA
CCCTATACATTACACGTTTTTTATAAGAACATTTTGGAAGCCTTCGGATG
TCCTTAACTTTTTGGTTTTTAAGTCTAAAAATGTTCTTTAAAAGGTGCTT
ATTTTCACCATTTTTACCCATTTTTCCTTAGAAATCGAATGTTTGAGAAA
AAAAAATGAATCTTAACTTGTTCTTGATATTTTGGCCATCGAAGCCTAAT
GTTCTTTTATAGTTCGTTCTTATAAAAATACATATAAGGGAACAAATTTT
GGTGATTAAAAAAAACCCTAAGAAACTCTGTCTTCTTTATAGGTGGCTGG
ACAGTAATTCAAAGACGTGTTGACGGAACAACCAACTTTTTTCGTAATTG
GCAAACCTACAAACAAGGATTCGGTCAACTCCACTATGAACACTGGCTTG
GGAACGATAACATATATCTTCTCACCAGACCACGAGAAAGTCACTCTGAA
ATACTATTTGATCTGCAAAGAAAAGATTATGGTCGCAGGCAATATGCAAA
GTATTCACTTTTCAGGATTGATAACGAGTATAACGCGTATAAACTCCATA
TCAGTGGTTTCTCTGGAAATATTGGACAAGATAAGATGAATTATCATAAT
GGAATGAAATGGAGCACACGTGACCGAGATAATGATCTAAGACCAGGTTC
GGAAATAATTTTTATTTCAGATAGGTACCCGACCAGCTGCCAGTTGGGTC
TATTACGAAATTCTACAGTAGACTCTTCGCCTATTCGAATCTTTGTATTA
TTCGAACTGACTCTTATCCCCCCTCAAGGAAAAACCCTCTCGATGTACTT
TCTATAATTTGAATTTCTCTGTAATTCGAACATCTAAGATTCCCCGTTGG
AGTTCGAATTAGCGAAAGTCATCTGTATGTCAGACGGTCGGACGGAAAGA
TTAAAACGTGTCTTCTTTAAGTGGTGTCAGACCCGTTCTTTGTCAACTAC
AATGATTGACAAATCTAACTACTTTTGTGGTCTAAAGAGAAATCATGGAA
AGCATAAGTGTTACATTCATGGTCAAAACTCATGAAGAGTATGGCCGGGT
ATTCCCGGTCGGAATCAGAATCTTTCTCTGTGAACGGACCTTATCTTTAC
GAAGATTTCAAAATTCATTGCTGTATTTCACTTCACTATACATGAGATAA
ACTCTTGTACAGAGATTAGTGATTAGTCCTTTTTTCCCTGGTGCAGTTGA
ATTCTCTATAACTCAAACACACACACAAGCCCAGCCGGCACACAACGTTG
TTTCAACGTCTATCTAACGTTCTCAACGTCCATATAACGTTAGATGAACG
TTGAAACAACGTTGTGTGCCTGCTGGGAGTAGTTAAGGAAATTTTGAGTT
ATCAAGATTGGTTTATGAGGCATTGTCAACTGAACAAGAAGAAAAGAAGA
CTTGTTTGAGTTAAGAAGTGTATAGAGGTTCGAGCTATGGAGACTTCACT
GTATTTTATCTCGGAGAATTTATTTAGTTTGTAGGTTAAATGTTTACAGT
TTTGAGTTATATCTTTAAAAATAGTTAATGCCACTTGCATCATAAAGAAA
TCGGTCAGGGATTACAGTTTTGAGTCTTGACTTCCCTTCTTACATTGTTA
TTTCAGCTCATGATTGTGCTTATGATCAGAGAGGTGCTTGGTGGTATAAC
GGTTGTGAGACAAGCAATCTGAATGGAATTTATGACTCCTTCAATAAAGA
GAAAAATCCCGATGAAGCGTTTGGTTGGAATCCCTTCCGTTTGGAATTCT
CTGAAATGAAAGTTCGACGGAAGTAATTGCCCGTGTGGTGCTATCCTTGA
TAAAGACATTGACTACATTTCTACGTTTCCCTCTAAAAAGGGTACTAATT
TTCTTGAGAGTAATTTTTATGTTATGAAATCAGCCTTTCGGGTATTTTAG
AAACCAGGAAAATAAAATAGCGGAGAAAAATAATATATTGAATTGAATTT
TATTGAACTGCGG Coding sequence (CDS) from alignment at sc0000069:510914..513426- >TCONS_00006663 ID=TCONS_00006663|Name=TCONS_00006663|organism=Clytia hemisphaerica|type=CDS|length=1917bp|location=Sequence derived from alignment at sc0000069:510914..513426- (Clytia hemisphaerica)
CTCATGATTGTGCTTATGATCAGAGAGGTGCTTGGTGGTATAACGGTTGT
GAGACAAGCAATCTGAATGGAATTTATGACTCCTTCAATAAAGAGAAAAA
TCCCGATGAAGCGTTTGGTTGGAATCCCTTCCGTTTGGAATTCTCTGAAA
TGAAAGTTCGACGGAAGTAAGTGGCTGGACAGTAATTCAAAGACGTGTTG
ACGGAACAACCAACTTTTTTCGTAATTGGCAAACCTACAAACAAGGATTC
GGTCAACTCCACTATGAACACTGGCTTGGGAACGATAACATATATCTTCT
CACCAGACCACGAGAAAGTCACTCTGAAATACTATTTGATCTGCAAAGAA
AAGATTATGGTCGCAGGCAATATGCAAAGTATTCACTTTTCAGGATTGAT
AACGAGTATAACGCGTATAAACTCCATATCAGTGGTTTCTCTGGAAATAT
TGGACAAGATAAGATGAATTATCATAATGGAATGAAATGGAGCACACGTG
ACCGAGATAATGATCTAAGACCAGCGTGATTGTAAAGAACATCATTTGCA
AGGAGAAAGGATCAATGGTTTATACCGAATCAACCATGACACTGATGGGA
ATGATGTCTCTGTCTATTGTGATCAAACGACTGATGGAGCTCATGATTGT
GCTTATGATCAGAGAGGTGCTTGGTGGTATAACGGTTGTGAGACAAGCAA
TCTGAATGGAATTTATGACTCCTTCAATAAAGAGAAAAATCCCGATGAAG
CGTTTGGTTGGAATCCCTTCCGTTTGGAATTCTCTGAAATGAAAGTTCGA
CGGAAGTAAGTGGCTGGACAGTAATTCAAAGACGTGTTGACGGAACAACC
AACTTTTTTCGTAATTGGCAAACCTACAAACAAGGATTCGGTCAACTCCA
CTATGAACACTGGCTTGGGAACGATAACATATATCTTCTCACCAGACCAC
GAGAAAGTCACTCTGAAATACTATTTGATCTGCAAAGAAAAGATTATGGT
CGCAGGCAATATGCAAAGTATTCACTTTTCAGGATTGATAACGAGTATAA
CGCGTATAAACTCCATATCAGTGGTTTCTCTGGAAATATTGGACAAGATA
AGATGAATTATCATAATGGAATGAAATGGAGCACACGTGACCGAGATAAT
GATCTAAGACCAGCGTGATTGTAAAGAACATCATTTGCAAGGAGAAAGGA
TCAATGGTTTATACCGAATCAACCATGACACTGATGGGAATGATGTCTCT
GTCTATTGTGATCAAACGACTGATGGAGCTCATGATTGTGCTTATGATCA
GAGAGGTGCTTGGTGGTATAACGGTTGTGAGACAAGCAATCTGAATGGAA
TTTATGACTCCTTCAATAAAGAGAAAAATCCCGATGAAGCGTTTGGTTGG
AATCCCTTCCGTTTGGAATTCTCTGAAATGAAAGTTCGACGGAAGTAAGT
GGCTGGACAGTAATTCAAAGACGTGTTGACGGAACAACCAACTTTTTTCG
TAATTGGCAAACCTACAAACAAGGATTCGGTCAACTCCACTATGAACACT
GGCTTGGGAACGATAACATATATCTTCTCACCAGACCACGAGAAAGTCAC
TCTGAAATACTATTTGATCTGCAAAGAAAAGATTATGGTCGCAGGCAATA
TGCAAAGTATTCACTTTTCAGGATTGATAACGAGTATAACGCGTATAAAC
TCCATATCAGTGGTTTCTCTGGAAATATTGGACAAGATAAGATGAATTAT
CATAATGGAATGAAATGGAGCACACGTGACCGAGATAATGATCTAAGACC
AGCGTGATTGTAAAGAACATCATTTGCAAGGAGAAAGGATCAATGGTTTA
TACCGAATCAACCATGACACTGATGGGAATGATGTCTCTGTCTATTGTGA
TCAAACGACTGATGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006663-exon-sc0000069-1575043694:513310..513426 | TCONS_00006663-exon-sc0000069-1575043694:513310..513426 | Clytia hemisphaerica | exon |
| TCONS_00006663-exon-sc0000069-1575043694:512231..512584 | TCONS_00006663-exon-sc0000069-1575043694:512231..512584 | Clytia hemisphaerica | exon |
| TCONS_00006663-exon-sc0000069-1575043694:510914..511270 | TCONS_00006663-exon-sc0000069-1575043694:510914..511270 | Clytia hemisphaerica | exon |
| TCONS_00006663-exon-sc0000069-1510915933:513310..513426 | TCONS_00006663-exon-sc0000069-1510915933:513310..513426 | Clytia hemisphaerica | exon |
| TCONS_00006663-exon-sc0000069-1510915933:512231..512584 | TCONS_00006663-exon-sc0000069-1510915933:512231..512584 | Clytia hemisphaerica | exon |
| TCONS_00006663-exon-sc0000069-1510915933:510914..511270 | TCONS_00006663-exon-sc0000069-1510915933:510914..511270 | Clytia hemisphaerica | exon |
| TCONS_00006663-exon-sc0000069-1491911889:513310..513426 | TCONS_00006663-exon-sc0000069-1491911889:513310..513426 | Clytia hemisphaerica | exon |
| TCONS_00006663-exon-sc0000069-1491911889:512231..512584 | TCONS_00006663-exon-sc0000069-1491911889:512231..512584 | Clytia hemisphaerica | exon |
| TCONS_00006663-exon-sc0000069-1491911889:510914..511270 | TCONS_00006663-exon-sc0000069-1491911889:510914..511270 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000069 | supercontig | sc0000069:510914..513426 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00006663 vs. Swiss-Prot (Human)
Match: TENR (Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3) HSP 1 Score: 167.162 bits (422), Expect = 7.966e-46 Identity = 85/216 (39.35%), Postives = 122/216 (56.48%), Query Frame = 3
Query: 3 RDCKEHHLQGERINGLYRINHDTD-GNDVSVYCDQTTDGGGWTVIQRRVDGTTNFFRNWQTYKQGFGQLHYEHWLGNDNIYLLTRPRESHSEILFDLQRKDYGRRQYAKYSLFRIDNEYNAYKLHISGFSGNIGQDKMNYHNGMKWSTRDRDNDLRPAHDCAYDQRGAWWYNGCETSNLNGIYDSFNKEKNPDEAFGW-----NPFRLEFSEMKVR 632
+DC +H + G+ ++G+Y I + + + VYCD TTDGGGW V QRR +G T+FFR W Y+ GFG + E WLG DNI+ +T + E+ D+ +D +A Y F +++ N YKL I ++G G D ++YH G +ST DRDND+ +CA +GAWWY C +NLNG Y E + W + F + F EMK+R
Sbjct: 1136 QDCAQHLMNGDTLSGVYPIFLNGELSQKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKWADYRVGFGNVEDEFWLGLDNIHRIT--SQGRYELRVDM--RDGQEAAFASYDRFSVEDSRNLYKLRIGSYNGTAG-DSLSYHQGRPFSTEDRDNDV-AVTNCAMSYKGAWWYKNCHRTNLNGKYG----ESRHSQGINWYHWKGHEFSIPFVEMKMR 1341
The following BLAST results are available for this feature:
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