TCONS_00066180 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066180
Unique NameTCONS_00066180
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length549

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066180 ID=TCONS_00066180|Name=TCONS_00066180|organism=Clytia hemisphaerica|type=transcript|length=549bp
GTAGAATACTTGACACGAAAAGTTCAAGAAGGAAGgaacaatgaaaaaca
tttgaaaagagAAATTGATGACAAAGATCGGAAATTAGAAGATGCTGAAC
GCAAAATTAAAGACCTTCAAATACGACTGATTAGGTTCGCACGAGACGAT
GAAGCCAAGGATAAACACGTGGCAAcacttgaaaaagaaatgaaagaaat
caaTCGACGATTAGAAGAGGTCTTGGACGAGCATCAAGAACGCATTGTTG
CCCAGcaacaacatcaacaacaaaatggcgggaaaatcacaccaaaacaa
aatggcggaatAGCTGCACAACAGAACAATAAACAAAGGAACACTCAAAA
GAATGTAACTGACTCCAAAACATGCGTTCTTTTATAACACAATATCTGGT
CCTGAAATTTCTTGTCTTCAtgacgtcgtttcaacgttcatctaacgtta
tatggacgttgtgaatgttagaCAAACGTTGAAACTACGTCATGAAGTGT
GTACCAGATAGGGTAGTAAGAAATGGTTTCTAGAACGaaccatttttct
Run BLAST on NCBI

protein sequence of TCONS_00066180-protein

>TCONS_00066180-protein ID=TCONS_00066180-protein|Name=TCONS_00066180-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
VEYLTRKVQEGRNNEKHLKREIDDKDRKLEDAERKIKDLQIRLIRFARDD
EAKDKHVATLEKEMKEINRRLEEVLDEHQERIVAQQQHQQQNGGKITPKQ
NGGIAAQQNNKQRNTQKNVTDSKTCVLL
Run BLAST on NCBI

transcript from alignment at scaffold_451:1065911..1066864+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066180 ID=TCONS_00066180|Name=TCONS_00066180|organism=Clytia hemisphaerica|type=transcript|length=954bp|location=Sequence derived from alignment at scaffold_451:1065911..1066864+ (Clytia hemisphaerica)
GTAGAATACTTGACACGAAAAGTTCAAGAAGGAAGgaacaatgaaaaaca
tttgaaaagagAAATTGATGACAAAGATCGGAAATTAGAAGATGCTGAAC
GCAAAATTAAAGACCTTCAAATACGACTGATTAGGTAAGAGATATACCAC
AGCTGGCAtgcatacaacgttgtttcaacgttcatctaacgttatatgaa
cattagatgaatgtcgaaacaacgttgtgtgtcagctgggtcgAATTTGG
AATCTATGCTAAATATTACATTCTAATGCTTTCTTTCAGATATTGTGTTT
TCTCAATCCTGAACATTGAATAAGTTGGCTCCCTTTTATAAAACTTCTAA
TTTGTATCTGGCCATTGTTACCAAATCTGTCAAATTCTTTCTACCGCACC
CCAGAAGTCACCTTCAAAAGTCGAGTCGAAATGACTTGGGTTTATATGTT
GAACTGTCCACCTACAAAAATATGATAGTATCATTTGCGAGGTGGAGTAT
ATAAGATTACGTCATGTATCAAGAATTAACATTTTTCAGGTTCGCACGAG
ACGATGAAGCCAAGGATAAACACGTGGCAAcacttgaaaaagaaatgaaa
gaaatcaaTCGACGATTAGAAGAGGTCTTGGACGAGCATCAAGAACGCAT
TGTTGCCCAGcaacaacatcaacaacaaaatggcgggaaaatcacaccaa
aacaaaatggcggaatAGCTGCACAACAGAACAATAAACAAAGGAACACT
CAAAAGAATGTAACTGACTCCAAAACATGCGTTCTTTTATAACACAATAT
CTGGTCCTGAAATTTCTTGTCTTCAtgacgtcgtttcaacgttcatctaa
cgttatatggacgttgtgaatgttagaCAAACGTTGAAACTACGTCATGA
AGTGTGTACCAGATAGGGTAGTAAGAAATGGTTTCTAGAACGaaccattt
ttct

Coding sequence (CDS) from alignment at scaffold_451:1065911..1066864+

>TCONS_00066180 ID=TCONS_00066180|Name=TCONS_00066180|organism=Clytia hemisphaerica|type=CDS|length=774bp|location=Sequence derived from alignment at scaffold_451:1065911..1066864+ (Clytia hemisphaerica)
GTAGAATACTTGACACGAAAAGTTCAAGAAGGAAGgaacaatgaaaaaca
tttgaaaagagAAATTGATGACAAAGATCGGAAATTAGAAGATGCTGAAC
GCAAAATTAAAGACCTTCAAATACGACTGATTAGGTTCGCACGAGACGAT
GAAGCCAAGGATAAACACGTGGCAAcacttgaaaaagaaatgaaagaaat
caaTCGACGATTAGAAGAGGTCTTGGACGAGCATCAAGAACGCATTGTTG
CCCAGcaacaacatcaacaacaaaatggcgggaaaatcacaccaaaacaa
aatggcggaatAGCTGCACAACAGAACAATAAACAAAGGAACACTCAAAA
GAATGTAACTGACTCCAAAACATGCGTTCTTTTATAAGTAGAATACTTGA
CACGAAAAGTTCAAGAAGGAAGgaacaatgaaaaacatttgaaaagagAA
ATTGATGACAAAGATCGGAAATTAGAAGATGCTGAACGCAAAATTAAAGA
CCTTCAAATACGACTGATTAGGTTCGCACGAGACGATGAAGCCAAGGATA
AACACGTGGCAAcacttgaaaaagaaatgaaagaaatcaaTCGACGATTA
GAAGAGGTCTTGGACGAGCATCAAGAACGCATTGTTGCCCAGcaacaaca
tcaacaacaaaatggcgggaaaatcacaccaaaacaaaatggcggaatAG
CTGCACAACAGAACAATAAACAAAGGAACACTCAAAAGAATGTAACTGAC
TCCAAAACATGCGTTCTTTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041424XLOC_041424Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066180-proteinTCONS_00066180-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066180-exon-scaffold_451-1491911889:1065911..1066044TCONS_00066180-exon-scaffold_451-1491911889:1065911..1066044Clytia hemisphaericaexon
TCONS_00066180-exon-scaffold_451-1510915933:1065911..1066044TCONS_00066180-exon-scaffold_451-1510915933:1065911..1066044Clytia hemisphaericaexon
TCONS_00066180-exon-scaffold_451-1575043694:1065911..1066044TCONS_00066180-exon-scaffold_451-1575043694:1065911..1066044Clytia hemisphaericaexon
TCONS_00066180-exon-scaffold_451-1491911889:1066450..1066864TCONS_00066180-exon-scaffold_451-1491911889:1066450..1066864Clytia hemisphaericaexon
TCONS_00066180-exon-scaffold_451-1510915933:1066450..1066864TCONS_00066180-exon-scaffold_451-1510915933:1066450..1066864Clytia hemisphaericaexon
TCONS_00066180-exon-scaffold_451-1575043694:1066450..1066864TCONS_00066180-exon-scaffold_451-1575043694:1066450..1066864Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:1065911..1066864 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.42215	0.444785	0.670768	0.75399	0.703726	0.76279	1.2686	1.32039	5.41706	5.99408	1.77754	1.97189	2.58558	6.02306	10.8838	13.2322	4.34339	5.02583	1.19641	2.39297	1.45642	1.80061	1.14464	1.99036	0.463265	0.471994
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066180 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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