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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066296 ID=TCONS_00066296|Name=TCONS_00066296|organism=Clytia hemisphaerica|type=transcript|length=2002bp
ctaaaggctcggaaaatattgtacggaaaaatctcggaactcgtaaaata
tttctcatattgtactcgcaactgtccgataactattacatattttTTGA
GTCAGCCATTGAGATTTCACAGGGTAATAGACCTCAACGTGGagatatga
ttaaaaaaaaaaagtttgttatttGAGTCAAAATTGTGACTGCAGATCAA
AAAttatagttttttttaaagtgtaaGCCACACACGATATTGAAAAGTGA
TCTCTGAATGGGACCTTCTAGACTTGAAAAAGAAAGgctgaattttccaa
aaagtgttaaatgtacatactttTGCGTTGTTAAATGTACTTTTTTGTGG
CTTTTTTGTCGGCCACATATTTTACTCACACTTCATGCTTTAATATATTT
AAGTTGAGTAAGCCACAAaatttcgttctttttgcaaCAGGTAGATAAAT
TATTCAGCTTAACCATGTATTTTGACATGTAAGCCACATGATGGCCTCAT
TCTATGAGCAAAATAGTGGACGACataaaaaatgtcacaaaacaggggtt
AATTTTTGATTAGCATCACTGGATAGACTGGATGACACTGATAAGTGACC
AAGTGTAATGCTGGCAGACTCCAGTTTTTGGCTTTCCTTGAATACGTAGA
AAATCCATGCTACTAGATATAGTCAGTCTCTTTTTGGAggaaaacaaaca
gaaaaccatgACCAATGGACAATGCTTTCCAAAGTTTGGgagtattttca
tgtttttagtATAGTTTATAAACTTTGATTGGgttttagaatatatttta
ttgttttgttgtttttgtttttgttttttttcttaaaatggcgatatcct
ctagtctactCCACTGGACTCTGggtagtttaggtataaacttatttcgc
caacaaaaatcataaaaaagaaataagtttatacctgaATTAGACTCTGG
GTGCCTTCAAATAGCAAAATTATTAGAAAGCAAACTATTCATTTTTATgt
aaacttttaaatataaCTCGAGCTTAAAATATGCCAGGAGAATAGTATCT
CTGAAAAGTTGCTTTGTTTACTAAAGAGAGAATACAGTAAAGAAAGATAT
TCATCTATTTTTTGATGAAGAAGCTCTGAGGTCTAAAAGAAATACTAAAA
AGGTTGAGCTAAGTtggtttaatattttttcaagtatcttttttctgttt
gacTAGCATTTCAATTTTGGTTTACAGtaaagaattattttcttttcact
ctacCAAGGAAATTAACTACAAttacaaagattttttcaagtttgttttt
ctaaattgaaatttatttattgttcACTCAGGTTCACTACAATATATCTA
TATATTTTAGTAGCATTTAAACATGAATGTTCATTATCACTACATATAAA
AgcatttgaaaataaaaataaaggttaaaaaatagtgaaaatgcAAACAT
GATAAAAgtattaaacttttttaaatttctatgATTATATTTTTGGTGGT
AATTTTATGTATCAACTTTATAGTATTTTATCttgatttttcacattttt
gtaaATATCACTTTGTAATTATTTAAATGAAATTGCGGTGTacaaaagtc
tttttgatttttaggtgTTGTAAGATTCTGTGTAATTAAGTCAATTCAAC
TAAAGGATAGAAAAGTATAAATTTTGCTGTTCctcctttttcttttatta
ataAGCACTATCACTTCTTCACGACATGTCTTCCTTTGTTTACAGGACAG
ACACCTTATAtttgtgttttattttcattcaaaagtttGTCAGTGTTATG
ATATAGCATTGCCTTCTCTATGTGATTGTGATCCATGGGAAAAGTATTTT
CTGTCTGGAAGTACAGTTTTTAACTCTTGCCAGCTCttgctaattcgaac
taattctcagtttCAGTCATATAATAATTTCTAtgattcgaactaattct
cagtttCAGTCATATAATACTTTCTAtgattcgaactaattctcagtttC
AG Run BLAST on NCBI transcript from alignment at scaffold_451:1015222..1017223 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066296 ID=TCONS_00066296|Name=TCONS_00066296|organism=Clytia hemisphaerica|type=transcript|length=2002bp|location=Sequence derived from alignment at scaffold_451:1015222..1017223 (Clytia hemisphaerica)
CTGaaactgagaattagttcgaatcaTAGAAAGTATTATATGACTGaaac
tgagaattagttcgaatcaTAGAAATTATTATATGACTGaaactgagaat
tagttcgaattagcaaGAGCTGGCAAGAGTTAAAAACTGTACTTCCAGAC
AGAAAATACTTTTCCCATGGATCACAATCACATAGAGAAGGCAATGCTAT
ATCATAACACTGACaaacttttgaatgaaaataaaacacaaaTATAAGGT
GTCTGTCCTGTAAACAAAGGAAGACATGTCGTGAAGAAGTGATAGTGCTt
attaataaaagaaaaaggagGAACAGCAAAATTTATACTTTTCTATCCTT
TAGTTGAATTGACTTAATTACACAGAATCTTACAAcacctaaaaatcaaa
aagacttttgtACACCGCAATTTCATTTAAATAATTACAAAGTGATATtt
acaaaaatgtgaaaaatcaaGATAAAATACTATAAAGTTGATACATAAAA
TTACCACCAAAAATATAATcatagaaatttaaaaaagtttaatacTTTTA
TCATGTTTgcattttcactattttttaacctttatttttattttcaaatg
cTTTTATATGTAGTGATAATGAACATTCATGTTTAAATGCTACTAAAATA
TATAGATATATTGTAGTGAACCTGAGTgaacaataaataaatttcaattt
agaaaaacaaacttgaaaaaatctttgtaaTTGTAGTTAATTTCCTTGgt
agagtgaaaagaaaataattctttaCTGTAAACCAAAATTGAAATGCTAg
tcaaacagaaaaaagatacttgaaaaaatattaaaccaACTTAGCTCAAC
CTTTTTAGTATTTCTTTTAGACCTCAGAGCTTCTTCATCAAAAAATAGAT
GAATATCTTTCTTTACTGTATTCTCTCTTTAGTAAACAAAGCAACTTTTC
AGAGATACTATTCTCCTGGCATATTTTAAGCTCGAGttatatttaaaagt
ttacATAAAAATGAATAGTTTGCTTTCTAATAATTTTGCTATTTGAAGGC
ACCCAGAGTCTAATtcaggtataaacttatttcttttttatgatttttgt
tggcgaaataagtttatacctaaactaccCAGAGTCCAGTGGagtagact
agaggatatcgccattttaagaaaaaaaacaaaaacaaaaacaacaaaac
aataaaatatattctaaaacCCAATCAAAGTTTATAAACTATactaaaaa
catgaaaatactcCCAAACTTTGGAAAGCATTGTCCATTGGTcatggttt
tctgtttgttttccTCCAAAAAGAGACTGACTATATCTAGTAGCATGGAT
TTTCTACGTATTCAAGGAAAGCCAAAAACTGGAGTCTGCCAGCATTACAC
TTGGTCACTTATCAGTGTCATCCAGTCTATCCAGTGATGCTAATCAAAAA
TTaacccctgttttgtgacattttttatGTCGTCCACTATTTTGCTCATA
GAATGAGGCCATCATGTGGCTTACATGTCAAAATACATGGTTAAGCTGAA
TAATTTATCTACCTGttgcaaaaagaacgaaattTTGTGGCTTACTCAAC
TTAAATATATTAAAGCATGAAGTGTGAGTAAAATATGTGGCCGACAAAAA
AGCCACAAAAAAGTACATTTAACAACGCAaaagtatgtacatttaacact
ttttggaaaattcagcCTTTCTTTTTCAAGTCTAGAAGGTCCCATTCAGA
GATCACTTTTCAATATCGTGTGTGGCttacactttaaaaaaaactataaT
TTTTGATCTGCAGTCACAATTTTGACTCaaataacaaacttttttttttt
aatcatatctCCACGTTGAGGTCTATTACCCTGTGAAATCTCAATGGCTG
ACTCAAaaaatatgtaatagttatcggacagttgcgagtacaatatgaga
aatattttacgagttccgagatttttccgtacaatattttccgagccttt
ag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066296-exon-scaffold_451-1491911889:1015222..1017223 | TCONS_00066296-exon-scaffold_451-1491911889:1015222..1017223 | Clytia hemisphaerica | exon |
| TCONS_00066296-exon-scaffold_451-1510915933:1015222..1017223 | TCONS_00066296-exon-scaffold_451-1510915933:1015222..1017223 | Clytia hemisphaerica | exon |
| TCONS_00066296-exon-scaffold_451-1575043694:1015222..1017223 | TCONS_00066296-exon-scaffold_451-1575043694:1015222..1017223 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:1015222..1017223 . |
Blast
The following BLAST results are available for this feature:
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