TCONS_00000490 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000490
Unique NameTCONS_00000490
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2251

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000490 ID=TCONS_00000490|Name=TCONS_00000490|organism=Clytia hemisphaerica|type=transcript|length=2251bp
tTGTAATCTAACTTGAACTCAGACGTGTTTACGGGTCAGCCAACCAGaaa
aggtttttgaaaacaacCATGCATACGTTTGCTGGATCTTTGAACCAAGC
AATGTTTTTGCAAGAAGCTACTGTTCCAGACTGTTTGAAAGAAACTGCCA
ACAAATTGGTGGAGATGTATGAAAAACAAGTGCAACAAGCAGCTCAGAAC
ATCAAAACCGAACAAGTCGTTGCTAACAGTATCGCCAACACTCTTCTACA
ACAACCACAAACTCTCTCTCAACAAACCACAACTAACAACCTGATTCAAC
AACAGCAACCTATCGTGCAACAAAATCCTCAACAAATTCAACCAATGGAC
ACCACAACAAACACAACAGAAACAGAtacaacaaacaacaaagacaacTC
AACAGAAAACATTGATGTCACTTCAGTGTCAGTCGCTAACAATGTCGCAC
ACCAACAACATCAGCAGCAACTTCAACAACAGTTGCCACAACAATTACAA
CACCATCAACCACCacaacaaaacaatttaaaCATAGTTCTTAATGGTGA
CCAAAACCAACTGAAACCATCACCGGAAAATGTGGATCCAAACGCTCAAC
AAATGGGAGTCTACAACCGTGAGATCCCACCACCAAACAGCATCTATGGT
ATCGAGAGCCTCACCAGTAAGCCATACGACGCTGAAGCCTCCAGACAACT
CACCGATGTGATGCAGTCACCACGATTCCAAAACGGCTACAACACCATCG
CGTCCCCTCATCACTCCTCCCCAGACCGCAACAACCACCGCATGGATCAG
ACCGGCAACTGGCTATCACCAGGCAAGAGTCTACCATTCAGAGGCCTGTG
TCCACCTACATCTCCCTACGTTGACAACCGTGACAGCATGGTACAAGCAG
CTGCTCATGCTGCTGCAGCAGGCACCCAAGCAGCCAGACGATTCATGCCT
CCATTCTACGGTGGCACCAATCGGAATTTCACCCACCCTACAACCAATGG
TACCGCAGACCGCAACCGATACGGCAACTACCCTGTTGGCAGCCCTATGA
TGTCCACCCTAGGCTACCCAAGAGACACCACCATGGATAACCGATACAAT
CTTCACATACCACCAGCTCTTAACGGGTTCGGAGAAGAAGACAAATTCAA
GTTATCCCCACCAAGTCTTGAAGACAAACACATCTGGACCAAACAAGAGG
TGGAGCTTCTCTTAGATCTCTACGAAGAACACAAATCGAAACTCCAAGAC
CCACGTGTACGAAAAACCAAAGTTTGGGACGACATTGCTAAACATATCCA
CGAGAAACTGGAAGCAGATGTCAATGGGTGTCAATGTAACCAAAAATTTC
GTAATATGAAAGCTGATTACCAAAAAGTCGTAGAGCACAACGCAAGAGCT
GGATCATTCAGAAAAACATGCAAGTACTACGACCGGTTAGAAAAACTCTT
AACACCAGTTAGTGAAACCGATAAATTACGGTGCGACGAAAACGGAATGA
ACAATACCGGTTTCGCAAACGGATTCGGATCTAAAGCTGGTACACCAAAC
GGCAACGGATTTTATGACAGTTCACGAAGTACGACGTCctccgaatgtga
tgataaagCAAGTCGTGGTACGCCCTCTTCGCCCGAGAAGCGCACAATTG
ATCAAGTTGAAACTACTGGCGATGATTCCTCGCCTCCGCCCGCTAAACGC
CCTTGTAATGATTGTTCTGGATCTGTCAGTAAGAAAGACTTGGTAGAtgt
tttgaaagactttttaAGAGAACAACGTAAGCGAGATGAAGAGAACTTTG
CAAAATTACAGCAACTTCATAAAGAGAAATTGGACGCTGTGGTCAAGTTT
CTGGATATGTTTCAAGAACTAGTAAAGAAAGTGTAATGTAATTTAAATTG
ATTTCTCTAGTGTAACCTATTTTACCACGTTAACATTTTCTTAACTTCTT
AACTTATACCATAACAGATTTCGCTGCAATACTCAAACTTAACTGTGGCT
TTGAAAAATGCTAGCTTttagaattcatttttttttttgtatcttcaatt
ttattttatctagTTTGAACTAAAATACCTAAAGTGCTAAGTAATTAAAT
CACtaaattttgtttatatctGAATCTAATTTTTATCACGTTTAAAGCTC
TTGTAAATATTTTGTCAATTTAATAAATTTCTGTGTTTTAATTTATTCAT
GATTTATTTATTGCCTAAgttattatttattaatttattatgATTTATGA
A
Run BLAST on NCBI

transcript from alignment at sc0000002:1540355..1544240+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000490 ID=TCONS_00000490|Name=TCONS_00000490|organism=Clytia hemisphaerica|type=transcript|length=3886bp|location=Sequence derived from alignment at sc0000002:1540355..1544240+ (Clytia hemisphaerica)
tTGTAATCTAACTTGAACTCAGACGTGTTTACGGGTCAGCCAACCAGaaa
aggtttttgaaaacaacCATGCATACGTTTGCTGGATCTTTGAACCAAGC
AATGTTTTTGCAAGAAGCTACTGTTCCAGACTGTTTGAAAGGTACTATTA
CTAGATTCATTGTGTTTTGATAATTTGTGAACTGATTTGCatggttttaa
agttttcatatttttgttcTCTGGTTTCGGCTTTGGTTTATTCTTTGGTT
TCAAccaagccttgtgttcttataaaaaagcatgtttaATCTGATTTGCT
TGACCTGATTTTTGCTTGACTGCTTCgtccttcttttttttttttgaaac
accgGTGTCACAGGAAAAAAGTACTCCCCGAAAAAAGTACTCCCCAGTAC
TCCTGGGAGTACATTCTTCCCAGGAAATTGCCACCCCCTCCAGGAAAAAA
GTACTCCCCATAGATACTATGCTGGGAAGTCAATTTTCCATAAAAGTTAT
TTTGAACTATTAACCGACCCATCAACTTTGAATTTAAGCGAAGTTTCAGA
TTTATGGTcgagaaaaaattgaatacttaCTAAGTCAGGTAAAAATTTAG
TTTGAGAAGAAAATTTGGCTGCTCGGAGACCCTTTATCCAAGTTTGGACT
AACTTGTTTAGCTCTAAAACAAGCCTCTAATTTTGCgtttcaaatattat
ttttctaaatagggtgtaaatattctgaaaaaaatcctGCAAAAAAAGTA
GATATTTTACTTGGATAGCCCAAATGTAGGACTACTTTTAGACAGTATTT
CGATTGTTTATACAcggtcaaaatttcattcaaacaaAATAAGTGCTTCT
TTCAATAAGGATGTGCAGTTTTTCTTTGAGTTAAGGTACTTTcaacaatt
tggaagcgctcttaAGCACTTAAGATCTAAAATGTTCAAGAATAGTCCAA
TAAggtcccaaattgaaatattcgattacatttaacaaaacttaaaagcg
actttctcgccaaaacaagaaataaccaaaattctcaatatattttgaca
cAAATTAGGGGAGTACAAATTTCCCAGAGGGGTTAAGAATTTCCTGGGAA
AAAAGTACCGGGGAGTATCTATTTCCTGGGAGTACTTGTTTTCTGTTACA
CCGGTTTTAGATAATCTTTGTATCTTGGTTGCATCTgcacattttgtttt
ttataagaacattttaaaatattcttattttcaccattttgtgagaatgt
ttttcaccattttctaaTAAATAGTGTGTTTCAGAgtaaagccttaaaac
gttCTTTTGGTCAtcaaaaccttatgttcttataaaacgtgAATACATTT
CTGAATGTCTTCCTTCTTGGACTGGAGTCTTCTTATCTTTTGACTTTCGT
GTATTTATGGACAACGCTCCTTTACAGAGCAAGGATACATCAAAAGATTT
TACctcattggaaagataattcAACGTGGATTTctttagaaattattttt
aacttAAAGAAAAACACCATACTGCTAGGATAGGATTTAGAATGTACTCA
AAATTACGAATTTAAACGATAAAACTACATAGTGGCGAACAATTGGTCTA
CTTAGGCGgttctttaaaaagtttttgcgGGGTCTTTACTTCTCCCTTAA
TAAATCCGTTTTAAGAATCTTAAAGTTTATCATTATATTCAAGTTCACTT
CAACCATTTTCCATTCAGCATCACGTCCAAAGCCATAAAATCctaatatt
taatttttcgaattttcaatTTACAGAAACTGCCAACAAATTGGTGGAGA
TGTATGAAAAACAAGTGCAACAAGCAGCTCAGAACATCAAAACCGAACAA
GTCGTTGCTAACAGTATCGCCAACACTCTTCTACAACAACCACAAACTCT
CTCTCAACAAACCACAACTAACAACCTGATTCAACAACAGCAACCTATCG
TGCAACAAAATCCTCAACAAATTCAACCAATGGACACCACAACAAACACA
ACAGAAACAGAtacaacaaacaacaaagacaacTCAACAGAAAACATTGA
TGTCACTTCAGTGTCAGTCGCTAACAATGTCGCACACCAACAACATCAGC
AGCAACTTCAACAACAGTTGCCACAACAATTACAACACCATCAACCACCa
caacaaaacaatttaaaCATAGTTCTTAATGGTGACCAAAACCAACTGAA
ACCATCACCGGAAAATGTGGATCCAAACGCTCAACAAATGGGAGTCTACA
ACCGTGAGATCCCACCACCAAACAGCATCTATGGTATCGAGAGCCTCACC
AGTAAGCCATACGACGCTGAAGCCTCCAGACAACTCACCGATGTGATGCA
GTCACCACGATTCCAAAACGGCTACAACACCATCGCGTCCCCTCATCACT
CCTCCCCAGACCGCAACAACCACCGCATGGATCAGACCGGCAACTGGCTA
TCACCAGGCAAGAGTCTACCATTCAGAGGCCTGTGTCCACCTACATCTCC
CTACGTTGACAACCGTGACAGCATGGTACAAGCAGCTGCTCATGCTGCTG
CAGCAGGCACCCAAGCAGCCAGACGATTCATGCCTCCATTCTACGGTGGC
ACCAATCGGAATTTCACCCACCCTACAACCAATGGTACCGCAGACCGCAA
CCGATACGGCAACTACCCTGTTGGCAGCCCTATGATGTCCACCCTAGGCT
ACCCAAGAGACACCACCATGGATAACCGATACAATCTTCACATACCACCA
GCTCTTAACGGGTTCGGAGAAGAAGACAAATTCAAGTTATCCCCACCAAG
TCTTGAAGACAAACACATCTGGACCAAACAAGAGGTGGAGCTTCTCTTAG
ATCTCTACGAAGAACACAAATCGAAACTCCAAGACCCACGTGTACGAAAA
ACCAAAGTTTGGGACGACATTGCTAAACATATCCACGAGAAACTGGAAGC
AGATGTCAATGGGTGTCAATGTAACCAAAAATTTCGTAATATGAAAGCTG
ATTACCAAAAAGTCGTAGAGCACAACGCAAGAGCTGGATCATTCAGAAAA
ACATGCAAGTACTACGACCGGTTAGAAAAACTCTTAACACCAGTTAGTGA
AACCGATAAATTACGGTGCGACGAAAACGGAATGAACAATACCGGTTTCG
CAAACGGATTCGGATCTAAAGCTGGTACACCAAACGGCAACGGATTTTAT
GACAGTTCACGAAGTACGACGTCctccgaatgtgatgataaagCAAGTCG
TGGTACGCCCTCTTCGCCCGAGAAGCGCACAATTGATCAAGTTGAAACTA
CTGGCGATGATTCCTCGCCTCCGCCCGCTAAACGCCCTTGTAATGATTGT
TCTGGATCTGTCAGTAAGAAAGACTTGGTAGAtgttttgaaagacttttt
aAGAGAACAACGTAAGCGAGATGAAGAGAACTTTGCAAAATTACAGCAAC
TTCATAAAGAGAAATTGGACGCTGTGGTCAAGTTTCTGGATATGTTTCAA
GAACTAGTAAAGAAAGTGTAATGTAATTTAAATTGATTTCTCTAGTGTAA
CCTATTTTACCACGTTAACATTTTCTTAACTTCTTAACTTATACCATAAC
AGATTTCGCTGCAATACTCAAACTTAACTGTGGCTTTGAAAAATGCTAGC
TTttagaattcatttttttttttgtatcttcaattttattttatctagTT
TGAACTAAAATACCTAAAGTGCTAAGTAATTAAATCACtaaattttgttt
atatctGAATCTAATTTTTATCACGTTTAAAGCTCTTGTAAATATTTTGT
CAATTTAATAAATTTCTGTGTTTTAATTTATTCATGATTTATTTATTGCC
TAAgttattatttattaatttattatgATTTATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000307XLOC_000307Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000490-exon-sc0000002-1491911889:1540355..1540495TCONS_00000490-exon-sc0000002-1491911889:1540355..1540495Clytia hemisphaericaexon
TCONS_00000490-exon-sc0000002-1510915933:1540355..1540495TCONS_00000490-exon-sc0000002-1510915933:1540355..1540495Clytia hemisphaericaexon
TCONS_00000490-exon-sc0000002-1575043694:1540355..1540495TCONS_00000490-exon-sc0000002-1575043694:1540355..1540495Clytia hemisphaericaexon
TCONS_00000490-exon-sc0000002-1491911889:1542131..1544240TCONS_00000490-exon-sc0000002-1491911889:1542131..1544240Clytia hemisphaericaexon
TCONS_00000490-exon-sc0000002-1510915933:1542131..1544240TCONS_00000490-exon-sc0000002-1510915933:1542131..1544240Clytia hemisphaericaexon
TCONS_00000490-exon-sc0000002-1575043694:1542131..1544240TCONS_00000490-exon-sc0000002-1575043694:1542131..1544240Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1540355..1544240 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0192457	26.2996	24.6091	10.101	6.17373	6.94557	2.66009	7.39423	8.13645	9.77104	5.46285	7.32902	18.5781	10.7296	5.75896	0.0554069	0	5.44116	4.48908	3.04289	2.26661	5.61146	5.91807	0.359582	0.483071	0.578514	0.400106
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000490 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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