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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066113 ID=TCONS_00066113|Name=TCONS_00066113|organism=Clytia hemisphaerica|type=transcript|length=984bp
ATCGTTACAAATTTTACTATGCAATTATACATCATGATGGTAAAGTAGCT
TTTATAGAGCACCCCGATGACAAATCTTTCATCGATAGTCGCACAGAAAC
ACACGAGTTTGAAGCCTTGTTGGAAAGAATTGAAGAAGTTAGTCCTGATG
TTATCATCTATCACGTTTATGGAACCAAAGGAAGCACCACCTATCGCTCA
GCTTTGGAGATTCTCGACATACCAATCTTAGGATCGACAGCAGACAAACA
TTTCATCACAAACAACAAAGCTTTGACCAGATCTTTTCTAGCAGCAGCTG
ACGTGTGTATTGCACCAGGAACGGAGCTCTATCATCAGGATGTTGACGAA
TGTTTGATAACAGATTTGGAGCAGAAGCACGGCTATCCTTTGGTTGTCAA
AGCAGCTACCGTAGAGAATTCAGAGGGAGTTTTCATTGCAAAGAATCGAC
AGGATATCTTGAAGTATGTCCAAGAATGTTTCTTCTTAAGCCCAGAAGCA
GTTGTTATCGAGAAATTTATCGCTGGTCGAGAAATCAGATGTGCAGttat
tgaagatgaaaatgaaaatccatGGTTTTTACCAGTCCTCGAGTACAAAG
TCGGTGGAAATGATAATATTCGTTCACTTCAGAAGAAACTGGATACTGAA
GACTTCGAGACTTCAGGAATGATGAAATTGCGACACGAAACCACTCAAAC
CTTTCTATGTCAAAAAGCAGATTCACAATTAATCAAAGATATCAAGCGAA
TTGCCTTGAAAACTTTCGCCGCTCTGGAATTGCATGATTTTGCTATTTTC
GATTTGCGAGTTGACAAATCGGGAAAACCGTATATTTTGGAAGCAAATCT
TTTTTGCAGCTTTAATGCGGTTAGTTGGGTGAATTACTTAGCAAATCACA
TAGGTATCTCAAATGAGAGACTTTTAGAAATGACAATAAATAACGCTTTA
AAAcgtcaaaagaagaaaagcgATTCAGATGGAC Run BLAST on NCBI protein sequence of TCONS_00066113-protein >TCONS_00066113-protein ID=TCONS_00066113-protein|Name=TCONS_00066113-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
RYKFYYAIIHHDGKVAFIEHPDDKSFIDSRTETHEFEALLERIEEVSPDV
IIYHVYGTKGSTTYRSALEILDIPILGSTADKHFITNNKALTRSFLAAAD
VCIAPGTELYHQDVDECLITDLEQKHGYPLVVKAATVENSEGVFIAKNRQ
DILKYVQECFFLSPEAVVIEKFIAGREIRCAVIEDENENPWFLPVLEYKV
GGNDNIRSLQKKLDTEDFETSGMMKLRHETTQTFLCQKADSQLIKDIKRI
ALKTFAALELHDFAIFDLRVDKSGKPYILEANLFCSFNAVSWVNYLANHI
GISNERLLEMTINNALKRQKKKSDSDG Run BLAST on NCBI transcript from alignment at scaffold_450:23078..24061 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066113 ID=TCONS_00066113|Name=TCONS_00066113|organism=Clytia hemisphaerica|type=transcript|length=984bp|location=Sequence derived from alignment at scaffold_450:23078..24061 (Clytia hemisphaerica)
GTCCATCTGAATcgcttttcttcttttgacgTTTTAAAGCGTTATTTATT
GTCATTTCTAAAAGTCTCTCATTTGAGATACCTATGTGATTTGCTAAGTA
ATTCACCCAACTAACCGCATTAAAGCTGCAAAAAAGATTTGCTTCCAAAA
TATACGGTTTTCCCGATTTGTCAACTCGCAAATCGAAAATAGCAAAATCA
TGCAATTCCAGAGCGGCGAAAGTTTTCAAGGCAATTCGCTTGATATCTTT
GATTAATTGTGAATCTGCTTTTTGACATAGAAAGGTTTGAGTGGTTTCGT
GTCGCAATTTCATCATTCCTGAAGTCTCGAAGTCTTCAGTATCCAGTTTC
TTCTGAAGTGAACGAATATTATCATTTCCACCGACTTTGTACTCGAGGAC
TGGTAAAAACCatggattttcattttcatcttcaataaCTGCACATCTGA
TTTCTCGACCAGCGATAAATTTCTCGATAACAACTGCTTCTGGGCTTAAG
AAGAAACATTCTTGGACATACTTCAAGATATCCTGTCGATTCTTTGCAAT
GAAAACTCCCTCTGAATTCTCTACGGTAGCTGCTTTGACAACCAAAGGAT
AGCCGTGCTTCTGCTCCAAATCTGTTATCAAACATTCGTCAACATCCTGA
TGATAGAGCTCCGTTCCTGGTGCAATACACACGTCAGCTGCTGCTAGAAA
AGATCTGGTCAAAGCTTTGTTGTTTGTGATGAAATGTTTGTCTGCTGTCG
ATCCTAAGATTGGTATGTCGAGAATCTCCAAAGCTGAGCGATAGGTGGTG
CTTCCTTTGGTTCCATAAACGTGATAGATGATAACATCAGGACTAACTTC
TTCAATTCTTTCCAACAAGGCTTCAAACTCGTGTGTTTCTGTGCGACTAT
CGATGAAAGATTTGTCATCGGGGTGCTCTATAAAAGCTACTTTACCATCA
TGATGTATAATTGCATAGTAAAATTTGTAACGAT Coding sequence (CDS) from alignment at scaffold_450:23078..24061 >TCONS_00066113 ID=TCONS_00066113|Name=TCONS_00066113|organism=Clytia hemisphaerica|type=CDS|length=981bp|location=Sequence derived from alignment at scaffold_450:23078..24061 (Clytia hemisphaerica)
TCCATCTGAATcgcttttcttcttttgacgTTTTAAAGCGTTATTTATTG
TCATTTCTAAAAGTCTCTCATTTGAGATACCTATGTGATTTGCTAAGTAA
TTCACCCAACTAACCGCATTAAAGCTGCAAAAAAGATTTGCTTCCAAAAT
ATACGGTTTTCCCGATTTGTCAACTCGCAAATCGAAAATAGCAAAATCAT
GCAATTCCAGAGCGGCGAAAGTTTTCAAGGCAATTCGCTTGATATCTTTG
ATTAATTGTGAATCTGCTTTTTGACATAGAAAGGTTTGAGTGGTTTCGTG
TCGCAATTTCATCATTCCTGAAGTCTCGAAGTCTTCAGTATCCAGTTTCT
TCTGAAGTGAACGAATATTATCATTTCCACCGACTTTGTACTCGAGGACT
GGTAAAAACCatggattttcattttcatcttcaataaCTGCACATCTGAT
TTCTCGACCAGCGATAAATTTCTCGATAACAACTGCTTCTGGGCTTAAGA
AGAAACATTCTTGGACATACTTCAAGATATCCTGTCGATTCTTTGCAATG
AAAACTCCCTCTGAATTCTCTACGGTAGCTGCTTTGACAACCAAAGGATA
GCCGTGCTTCTGCTCCAAATCTGTTATCAAACATTCGTCAACATCCTGAT
GATAGAGCTCCGTTCCTGGTGCAATACACACGTCAGCTGCTGCTAGAAAA
GATCTGGTCAAAGCTTTGTTGTTTGTGATGAAATGTTTGTCTGCTGTCGA
TCCTAAGATTGGTATGTCGAGAATCTCCAAAGCTGAGCGATAGGTGGTGC
TTCCTTTGGTTCCATAAACGTGATAGATGATAACATCAGGACTAACTTCT
TCAATTCTTTCCAACAAGGCTTCAAACTCGTGTGTTTCTGTGCGACTATC
GATGAAAGATTTGTCATCGGGGTGCTCTATAAAAGCTACTTTACCATCAT
GATGTATAATTGCATAGTAAAATTTGTAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066113-exon-scaffold_450-1491911889:23078..24061 | TCONS_00066113-exon-scaffold_450-1491911889:23078..24061 | Clytia hemisphaerica | exon |
| TCONS_00066113-exon-scaffold_450-1510915933:23078..24061 | TCONS_00066113-exon-scaffold_450-1510915933:23078..24061 | Clytia hemisphaerica | exon |
| TCONS_00066113-exon-scaffold_450-1575043694:23078..24061 | TCONS_00066113-exon-scaffold_450-1575043694:23078..24061 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_450 | supercontig | scaffold_450:23078..24061 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
| GO:0005524 | ATP binding |
| GO:0008716 | D-alanine-D-alanine ligase activity |
| GO:0046872 | metal ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0008716 |
D-alanine-D-alanine ligase activity |
| molecular_function |
GO:0046872 |
metal ion binding |
Blast
The following BLAST results are available for this feature:
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