TCONS_00065911 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065911
Unique NameTCONS_00065911
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2041

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065911 ID=TCONS_00065911|Name=TCONS_00065911|organism=Clytia hemisphaerica|type=transcript|length=2041bp
GGAAATCTGTCAGCGCGATAAGACTTCAAAGAAACTACTGCTGGAAGTAG
GCTAGTAAAATTCCAAAGTTTAGGGAAAgggaacggaacggaacggacGG
AAGACACTACAAACAGCTCTTGACGTCCTCGAATCAcactttgtcaattt
ttagaACGTTCCCCCTCTTTTCAGCATTGAATTCTGAAAGATTCAGATCT
CTATATACAAGGATCAACGTGCAATGAGATGAGAATAAAAATTTCGGACA
TTTTCAAAGATGTCAGAGCAACCTAACAGAAGAATGGGCAAGGGAGAGAA
GAAACGCCCACTAAAAATTGTCATGCCTCCTGTTCACCAAACGCAACCTC
AACCAGTaaatgctccaAGGAATTTATCAGATAGAACCACATTAACTGTG
AACAGCCAGGATTACCCGTGCAGTACTGATGATTTGATAGAAATATGCGA
GCTTGGTCGTGGGGCCTATGGGGTTGTAGAAAAAATGAGACATAAACAAA
CTAACATAGAAATGGCTGTGAAGCGTATTAGGCACACGGTCAACACGACA
GAGCAAGGTCGTCTATTAATGGATTTAGATGTTTCAATGAGACTTAGTAA
TTACCCCTATGCCATCCAGTTTTATGGTGCACTCTTCAAAGAGgGAGATG
TTTGGATATGCATGGAACTCATGAAAACATCATTCgataaattttataaa
aaagttgcAGAGCAAGAAGGGGCTTTGATACCTGAAAAAGTACTGGGAAA
AATATCCTTCGCTGTTGTTTCTGCATTGGAATATTTACATAGTAAAATGA
AAGTAATCCACAGAGATGTCAAACCGTCCAATATATTAGTTAATGATAAC
GGAGAGATCAAATTATGTGACTTTGGAATCAGCGGACAACTGGTTGACTC
TCTGGCAAAAACCCTTACAGCTGGCTGTAAGCCCTATATGGCTCCTGAAC
GTATCAACCCAACGAAGGGACAACATGGTTATGATATACGTTCTGATGTG
TGGAGCTTAGGAATCACCATGGTCGAACTGGCATGTTTGAAATTCCCCTA
CAGCAGGTGGACAACACCTTTCGATCAATTAAAAGCAGTGGTAGAGGAGC
CTTCGCCTACGATACCATCCGAACATAATTATTCTGATGAACTTCATCAA
TTTATTTCACTTTGtttgaagaaGAACTTCCTGGAAAGACCAAAATATGA
CACTCTATTGACGGACTCATTCATCCTGACTCACGAGAAAACACCGGTTA
ACGAAATCGCAGGCTTCGTTCAACCCATCCTGGACCAAGTATGAATGACT
AAACGTCACATGTCAATCAAATGACGTcatatgacgtaatcttttcgaAA
ATGGGAGTGTCTTTACAATTcaagtttttttggcaaattgtGCTGGCTAT
GACACTGCTTGGCTTAAATGACGTCACTTTCTATAAGAAATCGAACCACA
GAAATTCATCGAATGAATATACCTACCAGCCCTCGTGTCGTATAGAACTC
TATAAAAGCGGACCGGACTTCAAGTTTACTGGGACCGAATGACACCAATC
AGTCTCAAGTCAATATTATGACTCTCACAGCTTTtagaaatatttgacgt
cattcGATCTCGATAAACTCGGGTCCAACCCCCTTGAGTTGATTGGTTTT
ATTCAAAGCCTAAAAGGCCTGAGCTTTAAAGACATTTGTTACATTGTTAG
TTCGATGTAAATCGAatattttttatagttttttgtGGAGAAAGCGAAAT
GAATTATGGGAATGTTGCATTGCATTGCTTGGCAATGTTAGTGCTTAGTT
TTCATCTTTCGTCAAATCAGCTTTTTCTTGTTAAACGTtgtttagctcta
gtttagacggcccatcttttgccctgcctattctgattgtgaattaaagt
gggctgtctaaagtcaaagCAATGTCCTCTTTTGACGCTAATGCAATATT
GTCttctttcaaacttttccagcttttccaagcaaagattttaactaccA
AGTTTGTGCCCTCTTTCTATCTACTCTAACAATTAAAATAG
Run BLAST on NCBI

transcript from alignment at scaffold_448:528590..544571+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065911 ID=TCONS_00065911|Name=TCONS_00065911|organism=Clytia hemisphaerica|type=transcript|length=15982bp|location=Sequence derived from alignment at scaffold_448:528590..544571+ (Clytia hemisphaerica)
GGAAATCTGTCAGCGCGATAAGACTTCAAAGAAACTACTGCTGGAAGTAG
GCTAGTAAAATTCCAAAGTTTAGGGAAAgggaacggaacggaacggacGG
AAGACACTACAAACAGCTCTTGACGTCCTCGAATCAcactttgtcaattt
ttagaACGTTCCCCCTCTTTTCAGCATTGAATTCTGAAAGATTCAGATCT
CTATATACAAGGATCAACGTGCAATGAGATGAGAATAAAAATTTCGGACA
TTTTCAAAGATGTCAGGTATGTGTTTTTTCAGGGCCATTTTGCGTTGTTC
GTAAATTTCTTTTTGGTTGCCGACACTTTTCCCTTTGCTCACAGTTTTGT
TCTATGAAGCTCACAGTCTTAaaatgaatagaccttttttcaaagaggcc
accctgttgaataattatgtagtccagcagaaaaacaatgataaaaccat
gcataattatcacaatatgcatgatacagtaattatgcatggctctatca
ttgtttttatggctggactacataaccagacgatgtcaatcgaacggaat
cgaacaaaaattccaatcgaatcaatcgaacgcaatcgaatgattgcgat
tcgattgccaaacgcaatcgaatatcaatcgaacgtaaaattctgggtaa
aattcgattgattcgattgatattcgattacgttcgattgatgttcgatt
acgttcgattgatgttcgattacgttcgactgcGTTCGACGGGTGGTCAA
TTAAATTAGATTCCAATTtacctcaattcctttcaaGGTGATATGGAAAT
CGCGAACCGGCCAAACAGCCATCGTACTCGTAGATTTTGCGGGCAACGTG
ACATACAGCCGTCTTTTCTTCGATTCATATCATCTCGTTTAACGCTTCAA
ATGTTGAACAAGAATCAACgttaatcaacagaatcaattagtcgaaccag
tcgaatgcaTAAGCCAATCGAACGtagtcgaatcaatcgaatacattagt
caatcgaacgcaatcgaatcaatcgaacacagtcgaatcaatcgaatcaa
tcgaatccaggcactaatcgaacgcaatcaaatcaatcgaacacagtcga
atcaatcgaatacattagtcaatcgaacgcaatcgaatcaatcgaacaca
gtcgaatcaatcgaatcaatcgaatccaggcactaatcgaacgcaatcaa
atcaatcgagaaaatcgcggtaatattcgattgacattcgattgcgttca
attgattcggcgttcgatttgttcgattgacatcgtctggacataattat
tcaacagggtggcctctttgaaaaatattattcctttctctaaaaaagaa
gggtgtcggaattagacgaggcgAGGGATGTCCAAACGATcccaatcgaa
cggaatcgacgatcaaaccagtcgaaccaaatcaaacgcaatcgaccggg
ttatttttttcttgtattttttgaaattgtctggTACTGTTGGATtctag
aggaggggtgtcgatattagaccaagttGCGGTACGCACCACCACTAAGG
GGGaagggggtcttctcaaaagcgtatgcttgctaACAGggcacaagtgt
tacgcgtaagccaaatcgcgtattatgaacaacctctaaattgctgatta
caggagaaaaaaaatcgaaattcaaaatggcagcCAAGCCCAcactgata
actatcaaaaatctttgtttttcaatcagctaccgtgagattgggtaact
tgcatcagtggaggcaaacatgcataaacctcaaatgaaagacctgtatt
aagttgaagttggtttgatattctacgtttgacgtttgatattcgtttga
tattctcaaatttgcgttttgaagtttttgtgactacttttggaactgga
aactattggaagccaatagactTTATTCTCAAGtgtgtctgtgcaaaatt
tcagcgctctccgtcgcagtgtgctccctctaaaaatttgtaaccgtcaa
acctcatttcggccgaaatgacaagttgggctcctgtgggggagagcggt
tatctttggaattggaaactattggaagccaatagagtttattctcaagg
gtgtctgtgcaaaatttcagcgctcttcgacgcagtgtgctccctctaaa
aatttgtaaccgtcaaacctcatttcggccgaaatgacaagttgggctcc
tttGGGGGAGAGTGGTTATcattggaattggaaactattggaagccaata
gagtttattctcaagggtgtgtgtgcaaaatttcagcgctctccgtcgca
gcgtgctccctctaaaaatttgtaaccgttaaacctcatttcggccaaaa
tgacaagttgggctcctgtgggggagagtggttatctttggaactggaaa
ctattggccatttttagagggagcacgctgcgacgaagagcgctgaaatt
ttgcttccaatagtttccagttccaaagataaccactctcccccacagga
gcccaacttgtcattttggccgaaatgaggtttaacggttaccaattttt
agagggagcacgctgcgacgaaGAGCGCTGATATtttgcacagacaccct
tgagaataaagtctattggcttccaatagtttccagttccaaagataacc
actctcccccacaggagcccaacttgtcattttggccgaaatgaggttta
acggttaccaatttttagagggagcacgctgcgacggagagcgctgaaat
tttgcacagacacccttgagaataaactctattggcttccaatagtttcc
agttccaaagataaccgctctcccccacaggagcccaacttgacatttcg
gccgaaatgaggtttaacggttacaaatttttagagggagcacgctgcgt
cgaagagcgctgaaattttgcacacacacccttgagaataaactctattg
gcttccaatagtttccagttccaaagataaccactctcccccacaggagc
ccaacttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgctgcgacgga
gagcgctgaaattttgcacacacacccttgagaataaactctattggctt
ccaatagtttccagttccaaaagtagtcacaaaaacttgaaaacgcaaat
ttgagaatatcaaacgaatatcaaacgaatatcaaacgtcaaacgtagaa
tatcaaaccaacttcaacttaatatgacctgtctggtcatttaAATACAA
CTACACAGCTccactcgcagctctactctaccatttttgttttgattaaa
ttttgtattttaatgactagccaggtctttcatttgagggctatgcatgt
tagcctccactgatgcaagttacccaatctcacggtattacagctcaata
aatcaatgaaataatttgaaataaaaagtattaCAAAcgttgaacctttc
atgaatccaaataaataaaagtatttatctaaagtgaagattgcatttca
aaataaaacgatatCCAAACCAACTTAAAGACAGTGTCtgcctagcctgg
atatccaggctgtaaactatttcacagtctagtctttgatattttatgtt
ctggtttacagcctggtctccctagagcgatttgcattctccatatgaga
atgcagtctGCTTGCTTGTGCTCATTTCGCTGAAGCCGTAAGGACCAATC
TACACGGTGcggagcaattctgaagcaaaaataggatagtcctccacttg
ctagtgaagagagcgctttctgttacatgaaaacatgaaaaagaagaaaa
cagaggcaagttcattttccaagaaaacatggtctgatgtttggtcatga
taatgcatgcaaacttgttcatgggctccggtgtaatctttggatgtttt
aaatggttttagataTTGTAAGGCTGCTTTTATTAAGTTCTGTTTTgatg
ccctgggttggctaggaaagttttggaaacatgggtttgcactttcattc
tctagggagaccaagctttataattttagaactttgtatgttgaggtaaa
ttttgttttttctaaaattttgagcttggatatccaggctagtgtctgcc
aactaaaaatttctctgcggggtcactgcactggcaaggagttacgactt
cagactttagattccaattcttgtgtaggctgcaactacactgccaaatg
atctgtattacaaatacttccaaataggtccataagttaagaaaatgaaa
ttatcatctagcacgggggttttgtttttaaaaacaaacttcaaaataaa
attgttaatgaacttgttacttaaaatatcacNNNNNNNNNNNNNNNNNN
NNNNNatcacttacttacataatttatttatgatataacacccctttctt
aaataaatggcttcttaaagtcttttatgtttgccgcaagaagggagaaa
aatttaatttaatttgatAAAGCGCTCccacagcattaatctttgatacg
caatGCAGCAGGGTGCAAGTGTGACTAATTTTTAGATTAGGCTAGAGTTA
TCTCCTTTCTCTGTCCTAtttcaacaatacaatgctTACATAGTTGACAC
ATAATACACATTGACAGAAGTATTCTCCATGCAATGTTTAGGCTGACCct
caaaatatttccttttccGGTCCACCAGGTGACAACAAAAAAACACGTGG
TTGGCCGCAAAAAAGATTATCTTGCTAAATTTTGATCTCAAAACTCAAAT
TTTGGAAGTACTCAAGGAAGCACTCGGGGGGGGGGACTCAGAGTTTCtta
aagttacaaagaaagcgagttgataaaatgAGGTTTAGAGACGTTTATTA
AAGTGACGAAAAAAGCGAGTGAATAAACTGAGGTTTAAAGACGTTTGTTG
GGCGTTAGTAGTCTTCAAGAGGCAGGGGTGTTAAAGTCTTGTCCCCCACG
CAAGGGAAAGCACGAGTTCttccaaaattaattctttgGTAATCAAACGC
TAGAGAAGAAAACTAACTGTAGTCATTTTTCTATGACGTAAACAAAGATC
TCTACTAAATTCAACACGaaccaaacaataaaaaaaatccaatgtCTAAA
CAAAAGTTCAATGTGACAAAGCTCATCGAGACCACTTTATTTGTTTCGAT
TATTAATTCTAAGGATTGaattttttctaatctttaGTTATCAAACAAAA
GCGGGAATCTGATGTGagcgttattttttcaaagaatccttTACCTCCAT
TTGATTGGATACTTCTTTTTAAACAATCGCACAGCAATTTTTtgattgga
aaaaaatgaaacaattgaTATCGCAGTGATTGTATGGTAAAATATTTGGC
CCTTTCACGAGTGTTTGCAATTTAACAAGATAAATCAATGTGACTGAACG
TCTGTAAACCTGATAAAGACCTCCACTAAGAAGTTCGAAATATTGTTTGA
AATAAGATTTATATGAAGAATGACTATTTGAACTTACATAAATGAAGAAC
AATGTAAATATGGGTGATTTCTTAGTTTTTCTTCTATGTCTTCATGTACA
CCAATCCGGGGAGTCTCCATATATATACCATAGGAAAGTTCATGAAACCT
GCTAACTTTATTTTGAGTTTAGCAAATCCCCAAGATTGGCAAACAATCAT
TTTCGGCTTTTCACTTTGATCCTTTATCTGTTTCTTTTTGGGTCATGTTT
GGGGCATAATAGCAAAACATTGGTGTTCGGGCTAAGTTAAGGCAACAAAA
CTTTAGATTTTGCCTCTGAAAACCTGGCCTGAACATGCGCAGGGCAAGTT
TGGGTCATGTTAGGGCCAAGTTGGCACCTCTACTTTCATAAGCTAAATCT
TGGTACCATTTTCAATTTCCCAACTTTCTCTTGGAAAAAATCACAATATG
TGACTCCAAAGGCAGTTTTAAGTaattagaaaatagaaaattctataata
aaatcagcatttttaagtaaaaactcttaaccctattcaaactaggcttt
taggggcggttcagaactagggggggcttttcctgtaccaccccttaact
tttgatctagtgggtctttttggatgaaatttggcacacaagatccttgt
gacgtaaggtaacttttgacaaaaaaaattttttgatgacgtcactcatc
atgcccaaagtgagcaaaaaccgaaaatttcctttgttcttataaatagc
tattgtattctaacaaaggctttagaaaaaagttgcctgagtttaaaatg
cttattttatcctaaatattcaaaaaattacggtctaaacgatatatttg
acaatgaaaataaatttgtattgtaaaagtgtcaatttttgtgacacctt
actgtcagaaatgtcatcatgctcaaggtgtgaaaatatttaggtgacaa
atttttttttattttgaagctaaataaaagttaagaatttacagaaaatt
tcacggcaaaagctctattatttcaggagctattagaaatagtttgacct
ccgaacagaaagagccccccccccctagtacgaatagggttaatatCCCA
AGTAATTTTTGATTTACAAGTGCCAGAAATCTTCCCACCTGTCAAATAAA
ATCCCCTCCTAATTTTACAGATTCtaccatctgccaaattaataCCCgcc
aaaaattgcattttggccaaccgccaaattaagtacACATCGAAGTTGAT
ACACTTCGGCAACAAATACCTGGTTTTCTGAAAGTCCCATGctatattta
tttattcatgctttctttatttctttctgtttctatttcaaaaattgtct
aGTCAGAACAGTCTATAAGATTCTGAGTGTTTTTCTTGGAACGTTTTAAA
GAGGTTCAATGTTTCTGGTTGAAATCTGAAGATCATCTCGACTCTCAAAA
ACAATATCAAATCTGATCAGATATCAACTGTTAGATTATTAGATATTAAC
TGTCAATAAATCTTTAAAGGAAAACAGACTAAAAGCGGCCTGCAAAAAAC
AGGAACCTTTAGCTTTGCCAACTTTAAAGGCCCTAAGGCAATAAACAACT
TACTGAAGTGGATTCTTATCAGGTTTTAATATTGCCCAACAGCAGTTGGT
TTTAATATTGCCCAAATCCATCACCCACCCCCACCTCTAAGAGGTAACGA
AATATTTGGGCTGGAAGTTGCTAAGAATTTTAGCTGTTTCAATCATGTCA
GGAATCTGGGCTGTGTGAAGGTTATTTTTGAAGGGTTGTTTTAGAATTCC
TTTTAATTGTCAGGTTACTAGATAAACAGTGTTCTACTTGAAATAATATA
GAAAATATGGTGTTATTTTATGAAAGGGAATTTGAGAAAGGGGAATTCCC
CTTCTACAtgattttccaggaaaaattcaatttgGTCACATGAATTTCAC
TGTCAACAAATTTTTTGATATcttcatatttttaaacaatattcAATACA
GATGCAAACCTTTTGAGATGATTTGATGACAACTTGTTTTCACCTTTTCT
ATTTCTTCAGTGTTCAATCAATATATATCTTGTTTTTATATACAGAGCAA
CCTAACAGAAGAATGGGCAAGGGAGAGAAGAAACGCCCACTAAAAATTGT
CATGCCTCCTGTTCACCAAACGCAACCTCAACCAGTGTAAGacaatttca
ccattttattttatcattctCTAATTTAGCTCAATGGAGCATTTTTTTGC
ATATCGATTCTGCTTCATCATTAACATTTTGTTTAACAAGCAACTATATT
TTGCAATTAatgtatttttgtgaaaaaaaagctaaaaaacttGTTTAGTA
GGAACATCTCTAttgtttttagaaatgctccaAGGAATTTATCAGATAGA
ACCACATTAACTGTGAACAGCCAGGTAAGTAGTACGGCTTAATGAATAAT
ATTTGACTCATTGACACAATGTGTGACCAATCAAGTTTAAAGACAGTAAT
GGGATACTTACTTGAAATCCCGCAGACTTTCATAGTGGTATAAGGGTatc
aaccattgagtttaaaggcaaatgggctagagaggaatcttcagcCTTTC
TCCCCTTAAtttttgttctgtttttatgGGATGCCTGATGAGACTTTGCC
CTTTTTTGTTCTTGCATAATCCATTTTTCGAAACCAGCTAAGAGTTTCTC
TAACCccgcttcaaactcaatggtatcaaccaggccatattttagaaagg
caaggcagcgtccgttggtggccaaaaagggcactttttcttatgttttt
ccactaaaaaggctgtttttaccaatattttagtaatttcaagagGGGCA
GTGTCCGATAACCGGACgcttaaagggcatgaaaaatggcctgtcAACCC
CCTCACAGATATGACATCTCCTAGATTTTTTACTCCACTCCTTCCCCTAT
AGGAATGTGTTAGTGCTTTGATAGTTTGATGTTGTACCTATCATAAAATG
TCTATTGAATTTTCGCTCTTTTTCTTTCAGGATTACCCGTGCAGTACTGA
TGATTTGATAGAAATATGCGAGCTTGGTCGTGGGGCCTATGGGGTTGTAG
AAAAAATGAGACATAAACAAACTAACATAGAAATGGCTGTGAAGGTTTGT
TCATTCTCAAAATCCCAGATCTTGATTGAAAATCTTCATCTCTCTTCTTG
TTTTTTTAGATTGAACTAATTTTTGACTTTACTAAAAAGCATTGTTGCTA
CCTTTCAATTTACTTTAGCCCATTAGACCTTCATATGCAATGTCTAACTA
AGTACTTCAtgaaaatttacaataaaagtGACAAGTTATAGATTTAACTT
TTACTTACACACATATTTTTAGGACTTCAATTCAAATTCTAGACTGTTAT
ATTTGGTAACTTTGCTTATTTTATAGCGTATTAGGCACACGGTCAACACG
ACAGAGCAAGGTCGTCTATTAATGGATTTAGATGTTTCAATGAGACTTAG
TAATTACCCCTATGCCATCCAGTTTTATGGTGCACTCTTCAAAGAGGTAA
GTCTGATCTATTTTTTCAGGATATTCCTAAACAGAATAAATTTTCAcggt
taattttttttgatggacAGCATAGCTATTATATATCTTTAGGTTAAATA
TGTACGAACAAGGTGCTCATgttaatcttttgttttttttctaggGAGAT
GTTTGGATATGCATGGAACTCATGAAAACATCATTCgataaattttataa
aaaagttgcAGAGCAAGAAGGGGCTTTGATACCTGAAAAAGTACTGGGAA
AAATATCCTTCGCTGTAAGtgttctttgtttttttgattCGTGTTTTTAA
AATTCCAGTCCTTCTTTCATAGCAGATCCATCCTGCGCAAACCACGCTCT
GCTGTAAAGTGATGGCGTGAATGTGacgatctgacctggttgttcagcTA
AAACAATCAAAACCGCACCACCTCttgcgaaagtgaaagtgcatGGCCAT
TCAAATTTGTTCAAGTCAAATGCAAGGAACATGCATATCCCTTCAAATTA
CACAAATAAATAAAGTCACAGTCAATTTAAGGTCGATTCTTGACTATTTT
TAATACAGGTGTTTCTTAAAAACGAAATTCTTATATgaatactttttgct
ttttcagGTTGTTTCTGCATTGGAATATTTACATAGTAAAATGAAAGTAA
TCCACAGAGGTGAGATAATTATTCGGTTATAAGTTGTTCCCAAAGACAAT
GAAAATTTGGGTAAAGTTCTTCGAAAAATTCTCAATCCCTTATAATTAAT
TACGAATTCATCAGAGTAAGCATTCACCCACGACTTATAACTTGTTATCG
AAGCTTATAAATATAGCTGAATCTATAGATTTTATCATTCCCTGAGGATG
GAANAAAGCTTAGAAATATACCTGAATCTATAGATTTCATCATTCCCTGA
GGATGGAAATcttgaatgttttttatttacgaTGAAATCTTTCTTAGATG
TCAAACCGTCCAATATATTAGTTAATGATAACGGAGAGATCAAATTATGT
GACTTTGGAATCAGCGGACAACTGGTTGACTCTCTGGCAAAAACCCTTAC
AGCTGGCTGTAAGCCCTATATGGCTGTATGTTATAAAATACTTATACTTT
ACTGATAACTCCTGTTATTCTACTGTCTCTCTCTTTTCATCTAACACAAG
TTCTATACGTTCTTAAATGACCTTCTGATTGCTGTTAAGCTTTCTCATTC
CCAGGGGAAACATTTCAGGTGCATTTCCAGGATCTTTCTAATGTTTTTCC
TGGGTATACtggaaaaataattcttttgcTGCTTGCAAATACGTAACAAA
CAATGGCCTTGTGACTGACCACCTAATAAGTTGAAGCTACTTTCCTACCT
ACCCAGAGCGTTGGTTTTTTACGTTGTTAAAGTGGCGATAGGAAAGCTTT
GCCGTGAATGAGAAAGATTAAGCCATTCTATGTTATATTTGACGGTTGAG
TCTGTCAGGTTCACGAACTAAATAAATCAAATccgataaaaaaaaattct
tctttggAAGTGTTTACACCGCAACATTACCCTAACTTTCGAAAGTCTGT
TCCGACTTAGAAATCAACTTCCAAAGCAAAACCAATAAGTAGTGAACAAG
AATTTCGTCACCGGTAAAGTAGCAAACTTCCCTTAGGTAGGGCGATTCTC
TGAGGTTTCCACTGCGTTAAGGTAAAATTAACTTTAAAAGTATTTAAATC
GAGCTACATTTTACATTTCAGCCTGAACGTATCAACCCAACGAAGGGACA
ACATGGTTATGATATACGTTCTGATGTGTGGAGCTTAGGAATCACCATGG
TTCGTTTGAATGATTTTTCCACTCATATTCTCaatttcagttgagctaga
atctgagaatgtatGTCAGTCAGTCTGTATGTCAGTCACctcaaaacttt
agggcaggctggagacttcaaaaatggtccgattcggctgaaattttgta
cacttgctccttgggtgaatacctgggggtgtttttttcatttttttttc
attttttttccaaattctgATTCtaacaatctttttttttttattccatt
ttttttattgttacaattgggcctacgagtAATTAAGAAGATACCGAAGT
TGATctagtgcggttagcacgttcgacagttttGTCACTGTTGCTACACG
TTTTGGATGAAATTAATACAATGAACTCTagctttaactcgaacctctat
aactggaATGTCTTCTTATTTCGAACAAGTTTAATGGTCCttttagttaa
caatgccttataagccttactccataactcgatatttccttaactcgaac
agatTTATGTTCCCTGCgcgtgttcgaattatggaatcTCCACTGTATAA
ATTTCAGTTTTCTGATTTGTTTACATACAGGAGTCGTCAATTTTCATCGC
TAATTTTTAATACGAaatttactttaatgggataaactttcgcggggatg
ggtctatccgcgaaattcaaaaacttcGCCGGGACTTGATTTCGCGGATG
AGGAGTTCCCTGAGTTTTCGTATAATTTCGCTGACCaggattaaattaaa
tttttctaaagtgattgcaaattttgcaaaatcggGGTAGCAAACAGAAC
ttctctcaaaattttgatattgtagtatgtgaaaattcgaaaaataatgA
AGAGACTTTCTTCCAAGCAGCAGGGTTTGAGTAGTCTGATTTGCGGGACG
AAAAACCGACgatagaaatttgaaattttcgcgaatcgaagaaagatttc
aatcatttcgcgggtacttaatttcgcggatgaggcccttccaaattttc
attgggacttaatttcgcggatttttgcggatgacacccaaatccgccag
aaatctgcgaaatttaatccccgcgaaagtttatcccattaaaagtAGGT
GACATGACTTGTGCCGTACTCCTAGATTTCAACATTACTAACAGAACTTT
TGGACGCGtgtattttaaaaacaatttttcttcACCTTTCatttctaaat
aaataaaataaataaataagtcaGACCTGAAGTCTGTTTCCGCCATCAAA
TTTGAAGATTGCAttgtatttttttatcattgagTTGATAAGCAGGTCGG
AATATTGTTTATTTCAACTCGTATAAGAATGACCATGGAAATGTATACTT
ACTCCATTCACTTTTagtgtattcatgatatgcaccattgcaatgtcttc
tgacattacatcatggaccaaatagctgattggttgtaagtgacgtaaga
tcagtcaatacgtcactttcagccaatcagctgttgggtatGTGGAAGAC
ATGGTATTCTATTAGTGAGATTTCCACATGGTAGCAAAAAAGAGTGCACG
CTTAAAGCGAATgtatttattgtttattttaacTCGCATAAGAATGACCA
TGGAAATATATACTATAGTCCGTTCGTTTAAATGCGTACTCTTTGCTACG
GTGTAGAAACCATGTCAGCGTGATTCAGACTAATTCCCTTGGGACTGGTT
TCCACTTGGTagcaaaaaagagtgcacacttcaAGCGAATGTATTTTAAA
TTATATTTCAATCCAGGTCGAACTGGCATGTTTGAAATTCCCCTACAGCA
GGTGGACAACACCTTTCGATCAATTAAAAGCAGTGGTAGAGGAGCCTTCG
CCTACGATACCATCCGAACATAATTATTCTGATGAACTTCATCAATTTAT
TTCACTTTGGTAAGAACTTTCTCTTTTGCTTGGCTAGTTAGGTTGTTCCA
TTTAGTATCCATCCAGGGCAGtgaaaatattccaagtcaaaaataattct
tgaaaatattgGANTTATCTTTCCAGGTCGAACTGGCATGTTTGAAATTC
CCATACAGCAGGTGGACAACACCCTTCGATCAATTAAAAGCAGTGGTAGA
GGAGCCTTCGCCTACGATACCACCCGAACATAATTATTCTGATGAACTTC
ATCAATTTATTTCACTTTGGTAAGAACTTTCTCTTTTGCTTGGCTAGTTA
GGTTGTTCCATTTAGTATCCATACAGGGAAgtgacgaaccttttcaagcc
agaaataattcatgaaaataTTGGATACCCCTCGGAGAAATGGTAGAATT
GCAAAAAATGCCCATGGAAATTGAGTCTTTCCCCTGAAAAGTTCTGGAAT
AAATTCGACGAGATTTCAAAGAAGggaagtatttaaagaggtttctACAA
GGTACAGGAAACTTTTTTAGGACTCAAAAACTGACTTCAATTGATATAAG
CGGTTTTGGGTTTTATTTTTTGGGGTAAGGGGTTTTTCCTGTGACGACGT
TTTTTGATCCTAAAAAAGCCTTAGCAAATACCCCAATCGCGAAAAATTCT
CTAAATACTTCATTCTTTAAAATGGGCCAGGTTTGGTTGCGTCGAATAAA
ATATGTCAAGGTCCGAAGGGTTTGTCCCCCTACTTATACTGGTACCTGTC
AGCACAGCTTACTATATCTAGCTATATGTACCTACCATTATGTTATAGCC
GAAGGCTAGAGCCGAATCCCCTATATTTAGGCTTATTTCCTAATAAAGTT
GCGTGGGGTTGCGTGTCCCGCGTGGTTTTCAaacaaacgctggattgaaa
TTTACCCCCAGAAttcgaaaaatgtaaaaaggAGCTAACAAAAAAATGGC
TCGATTAAATCAACCATCCGAAAAACGTCgtacattttaaggcttcactt
tttctagcttgggaaaggttaaagattcctcTTTAACATATTTGGCTTGA
TACTCAATTGTACTAACTTTGTCAAGAGAGTCTTTGTTTGAAAGATCGGG
AAAAGCTTTTATTCATGATATATGcaacattgcaatgtcttccacggact
caatagctgattggttgaaatgaCGTATTGACCAATCagttgttgggtcc
gtgatgtaatgtcagaagacatcgcaatggtgcatatcacgaaTACTTGT
ATAATCTTGCTCACATTTGCTATTTCGGAAGTATCATCGCAGTGTGATAG
CTACTCCTATCTAATTATTGAATGGTGAATTATGTCAAACCTTCTTCCTT
GCAATAGAAAATTCTACATAACATGGTTTGAGAGcagatcattttatttt
tgcaaaaagatatAGCTCTCGTTTTGCATAATACACGATCTCGCTGTTAG
TGATTCGCACATGAATACTTCCCCCCCTGTTTGATATTCTCAGTATAGGT
CAACGAGAAAAGGCTTTGAAAGGATAAACAGTTAAATATTTAAAAGGCAC
TTGCtgttttttaacgttttttgtgttttaataCTGGAGAGAGCTGAACT
GTGTTATTCGTTTCTTTAAATATTGGAAAGCTCTATCTACACTGTCAgtg
tttttgaaatataatagttTTAGTTTTGAGGGCGATCTATTCGGGTAGAG
AGTTTTTTGAATGtctcttttttaaataaaaacttgtcGTCTAATCAATT
GATTGTATCGATATTTTGTATGAATTTCTGACTTTTCCtattttcagttt
gaagaaGAACTTCCTGGAAAGACCAAAATATGACACTCTATTGGTACGTT
AAGCGAAACAATCTGTGACTAAATATTGTGGCAAGAactcccccccccct
agtaTAAATGTTGATGGGTGGAAAGGCTGCCACCAGAAAAAGCTCAAATC
AACCCTGATTTTAGGGGgggattttttaagaaattgcaacatattttgtc
actgattgtagttgATTAGTTATATATATCCGGCCTGGACTTAACcctat
taaaaaaattgaaaatcgcaATTAAGATAAAATTTTCATGTTTATTCTTG
CCGTCTGCTGATTTTTTACTGGAATGTCATTACTGTCATTTTAGACATTT
ATATCTATTTGCAGCCATCATAGTTTCGACTTTTAGACTAgaaatagctt
tcaaattcaCGTTTCTTTACACGATATTACCTCGCTTATCTCCAAGCATC
AAACAACAGTCAGAGTTATATACTTATCgtattttgttccttttttttcA
GACGGACTCATTCATCCTGACTCACGAGAAAACACCGGTTAACGAAATCG
CAGGCTTCGTTCAACCCATCCTGGACCAAGTATGAATGACTAAACGTCAC
ATGTCAATCAAATGACGTcatatgacgtaatcttttcgaAAATGGGAGTG
TCTTTACAATTcaagtttttttggcaaattgtGCTGGCTATGACACTGCT
TGGCTTAAATGACGTCACTTTCTATAAGAAATCGAACCACAGAAATTCAT
CGAATGAATATACCTACCAGCCCTCGTGTCGTATAGAACTCTATAAAAGC
GGACCGGACTTCAAGTTTACTGGGACCGAATGACACCAATCAGTCTCAAG
TCAATATTATGACTCTCACAGCTTTtagaaatatttgacgtcattcGATC
TCGATAAACTCGGGTCCAACCCCCTTGAGTTGATTGGTTTTATTCAAAGC
CTAAAAGGCCTGAGCTTTAAAGACATTTGTTACATTGTTAGTTCGATGTA
AATCGAatattttttatagttttttgtGGAGAAAGCGAAATGAATTATGG
GAATGTTGCATTGCATTGCTTGGCAATGTTAGTGCTTAGTTTTCATCTTT
CGTCAAATCAGCTTTTTCTTGTTAAACGTtgtttagctctagtttagacg
gcccatcttttgccctgcctattctgattgtgaattaaagtgggctgtct
aaagtcaaagCAATGTCCTCTTTTGACGCTAATGCAATATTGTCttcttt
caaacttttccagcttttccaagcaaagattttaactaccAAGTTTGTGC
CCTCTTTCTATCTACTCTAACAATTAAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041298XLOC_041298Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065911-exon-scaffold_448-1491911889:528590..528855TCONS_00065911-exon-scaffold_448-1491911889:528590..528855Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1510915933:528590..528855TCONS_00065911-exon-scaffold_448-1510915933:528590..528855Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1575043694:528590..528855TCONS_00065911-exon-scaffold_448-1575043694:528590..528855Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1491911889:536285..536375TCONS_00065911-exon-scaffold_448-1491911889:536285..536375Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1510915933:536285..536375TCONS_00065911-exon-scaffold_448-1510915933:536285..536375Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1575043694:536285..536375TCONS_00065911-exon-scaffold_448-1575043694:536285..536375Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1491911889:536562..536613TCONS_00065911-exon-scaffold_448-1491911889:536562..536613Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1510915933:536562..536613TCONS_00065911-exon-scaffold_448-1510915933:536562..536613Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1575043694:536562..536613TCONS_00065911-exon-scaffold_448-1575043694:536562..536613Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1491911889:537220..537333TCONS_00065911-exon-scaffold_448-1491911889:537220..537333Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1510915933:537220..537333TCONS_00065911-exon-scaffold_448-1510915933:537220..537333Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1575043694:537220..537333TCONS_00065911-exon-scaffold_448-1575043694:537220..537333Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1491911889:537616..537735TCONS_00065911-exon-scaffold_448-1491911889:537616..537735Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1510915933:537616..537735TCONS_00065911-exon-scaffold_448-1510915933:537616..537735Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1575043694:537616..537735TCONS_00065911-exon-scaffold_448-1575043694:537616..537735Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1491911889:537884..538003TCONS_00065911-exon-scaffold_448-1491911889:537884..538003Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1510915933:537884..538003TCONS_00065911-exon-scaffold_448-1510915933:537884..538003Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1575043694:537884..538003TCONS_00065911-exon-scaffold_448-1575043694:537884..538003Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1491911889:538347..538398TCONS_00065911-exon-scaffold_448-1491911889:538347..538398Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1510915933:538347..538398TCONS_00065911-exon-scaffold_448-1510915933:538347..538398Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1575043694:538347..538398TCONS_00065911-exon-scaffold_448-1575043694:538347..538398Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1491911889:538687..538814TCONS_00065911-exon-scaffold_448-1491911889:538687..538814Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1510915933:538687..538814TCONS_00065911-exon-scaffold_448-1510915933:538687..538814Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1575043694:538687..538814TCONS_00065911-exon-scaffold_448-1575043694:538687..538814Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1491911889:539461..539538TCONS_00065911-exon-scaffold_448-1491911889:539461..539538Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1510915933:539461..539538TCONS_00065911-exon-scaffold_448-1510915933:539461..539538Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1575043694:539461..539538TCONS_00065911-exon-scaffold_448-1575043694:539461..539538Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1491911889:541306..541448TCONS_00065911-exon-scaffold_448-1491911889:541306..541448Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1510915933:541306..541448TCONS_00065911-exon-scaffold_448-1510915933:541306..541448Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1575043694:541306..541448TCONS_00065911-exon-scaffold_448-1575043694:541306..541448Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1491911889:543237..543282TCONS_00065911-exon-scaffold_448-1491911889:543237..543282Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1510915933:543237..543282TCONS_00065911-exon-scaffold_448-1510915933:543237..543282Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1575043694:543237..543282TCONS_00065911-exon-scaffold_448-1575043694:543237..543282Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1491911889:543741..544571TCONS_00065911-exon-scaffold_448-1491911889:543741..544571Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1510915933:543741..544571TCONS_00065911-exon-scaffold_448-1510915933:543741..544571Clytia hemisphaericaexon
TCONS_00065911-exon-scaffold_448-1575043694:543741..544571TCONS_00065911-exon-scaffold_448-1575043694:543741..544571Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_448supercontigscaffold_448:528590..544571 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.600531	0.357552	0.755269	2.27015	19.8816	15.9401	5.63032	2.39307	1.09019	1.73187	1.91328	4.62802	0.341196	0.584108	0.139275	0.193266	0.858329	0.489077	0.155565	0.159704	0.237462	0.418176	0.158422	0.570749	8.16624	24.0297	1.03213	0.421784	0.385525	1.68328
Blast
[Close]
BLAST of TCONS_00065911 vs. Swiss-Prot (Human)
Match: MP2K6 (Dual specificity mitogen-activated protein kinase kinase 6 OS=Homo sapiens GN=MAP2K6 PE=1 SV=1)

HSP 1 Score: 392.119 bits (1006), Expect = 2.602e-130
Identity = 196/333 (58.86%), Postives = 244/333 (73.27%), Query Frame = 2 
Query:  290 KGEKKRP-LKIVMPPVHQTQPQPVNAP-RNLSDRTTLTVNSQDYPCSTDDLIEICELGRGAYGVVEKMRHKQTNIEMAVKRIRHTVNTTEQGRLLMDLDVSMRLSNYPYAIQFYGALFKEGDVWICMELMKTSFDKFYKKVAEQEGALIPEKVLGKISFAVVSALEYLHSKMKVIHRDVKPSNILVNDNGEIKLCDFGISGQLVDSLAKTLTAGCKPYMAPERINPTKGQHGYDIRSDVWSLGITMVELACLKFPYSRWTTPFDQLKAVVEEPSPTIPSEHNYSDELHQFISLCLKKNFLERPKYDTLLTDSFILTHEKTPVNEIAGFVQPIL 1282
            KG+K+ P LKI  P     QPQ  + P R+L  +  +++ +Q++    DDL  I ELGRGAYGVVEKMRH  +   MAVKRIR TVN+ EQ RLLMDLD+SMR  + P+ + FYGALF+EGDVWICMELM TS DKFYK+V ++ G  IPE +LGKI+ ++V ALE+LHSK+ VIHRDVKPSN+L+N  G++K+CDFGISG LVDS+AKT+ AGCKPYMAPERINP   Q GY ++SD+WSLGITM+ELA L+FPY  W TPF QLK VVEEPSP +P++  +S E   F S CLKKN  ERP Y  L+   F   HE +   ++A FV+ IL
Sbjct:    5 KGKKRNPGLKI--PKEAFEQPQTSSTPPRDLDSKACISIGNQNFEVKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELMDTSLDKFYKQVIDK-GQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDSVAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQLPAD-KFSAEFVDFTSQCLKKNSKERPTYPELMQHPFFTLHE-SKGTDVASFVKLIL 332
The following BLAST results are available for this feature:
BLAST of TCONS_00065911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MP2K62.602e-13058.86Dual specificity mitogen-activated protein kinase ... [more]
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