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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065964 ID=TCONS_00065964|Name=TCONS_00065964|organism=Clytia hemisphaerica|type=transcript|length=3196bpRun BLAST on NCBI protein sequence of TCONS_00065964-protein >TCONS_00065964-protein ID=TCONS_00065964-protein|Name=TCONS_00065964-protein|organism=Clytia hemisphaerica|type=polypeptide|length=608bp MVTKAEQRYRSELDLCRRELETLRAELDEQEEQTLKQKREINDLRNTNDTRun BLAST on NCBI transcript from alignment at scaffold_448:454513..473614- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065964 ID=TCONS_00065964|Name=TCONS_00065964|organism=Clytia hemisphaerica|type=transcript|length=19102bp|location=Sequence derived from alignment at scaffold_448:454513..473614- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_448:454513..473614- >TCONS_00065964 ID=TCONS_00065964|Name=TCONS_00065964|organism=Clytia hemisphaerica|type=CDS|length=23751bp|location=Sequence derived from alignment at scaffold_448:454513..473614- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065964 vs. Swiss-Prot (Human)
Match: MYH10 (Myosin-10 OS=Homo sapiens GN=MYH10 PE=1 SV=3) HSP 1 Score: 98.9821 bits (245), Expect = 9.732e-21 Identity = 143/499 (28.66%), Postives = 247/499 (49.50%), Query Frame = 2
Query: 440 NRLQKQKKRMQNELDQINAIFDTEKSEIADLQAKLKRANKIVAEERRIREQLQEAKSDLIIEKTNLENKMETLEDDKRALDRQVTDGEIARKALRLECENLGDARDNAKSMINNLEKDKRHADILLEEARKTNASFESQLGEVEQNYMTLQGQNQANKEQYARDISRKDDKVEELKRAVDKAERDLKVTLEEEKKKREQMMASRKGLESQITGLQIELDEANRRNDDQQKVIRKYQTQLAQLKDLQMELGEMNXXXXXXXXXXXXXXXXARSAQSEKDSVIANLQQSEX--RSAQSEKNSVIANLQQSERAKRXXXXXXXXXXXXXXXXKSLLRQQALDEKRILDDKYNELKMDYDDEKQRADEMDVKARKYQKXXXXXXXXXXXXKDERXXXXXXXXXXXXXXXXXXXXYSKL---DSTLKNKIRETTDVLERRMHQMEVDLEGEVKEREALNKTLRRTEKSLTETTALMTEAQEAEEVYKSQADKLTKKNEQLRREL 1921
++L+K K R+Q ELD + D ++ ++L+ K K+ ++++AEE+ I + E + E E K +L + E K LR + E+L ++D+ ++ LEK KR + +EE R E +L E + L+ QA K Q+ RD+ +D++ EE KR + K R+L+ LE+E+K+R +AS+K +E + L+ +++ AN+ D+ K +RK Q AQ+KD Q EL E A++ +D + A ++SE +S ++E + L SERA+R AE E E+ E+ S + LDEKR L+ + + ++ ++ M++ +++K + A ER + ++ +E +KL + +K+K + T LE ++ Q+E LE E KER A NK +RRTEK L E + + + + YK Q +K + +QL+R+L
Sbjct: 1416 DKLEKTKNRLQQELDDLTVDLDHQRQVASNLEKKQKKFDQLLAEEKSISARYAEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKKMEIDLKDLEAQIEAANKARDEVIKQLRKLQ---AQMKDYQRELEE---------------------ARASRDEIFAQSKESEKKLKSLEAEILQLQEELASSERARRHAEQERDELADEITNSAS-GKSALLDEKRRLEAR---IAQLEEELEEEQSNMELLNDRFRKTTLQVDTLNAELAAERSAAQKSDNARQQLERQNKELKAKLQELEGAVKSKFKATISALEAKIGQLEEQLEQEAKERAAANKLVRRTEKKLKEIFMQVEDERRHADQYKEQMEKANARMKQLKRQL 1886 The following BLAST results are available for this feature:
BLAST of TCONS_00065964 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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