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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065667 ID=TCONS_00065667|Name=TCONS_00065667|organism=Clytia hemisphaerica|type=transcript|length=2527bp
Attgcaatgggctcttccagaaaaaatccgttcatgggggtggaggatat
attatttttttcatgaattacccctggacattttgatttttaaccccctg
ggcAAACATCAAATccaccccgtggacacaaaaaattaccttattggtat
atattttcgcgtgttacaaattttcgcgggtacttaatttcgcaagtttt
ttggtcaattttcgcaaaatttaatactgtttaaatttttcaaaattaca
aaatcgctaaattaaatacacgcgaaaaatcttttcttagtattttgtta
gtatttttacatcaaaaacgttgtgtttcaagcaaaatcagtctttttct
tgctttacattcccactttctgaaaatacctagtttagtgaatcgcgaaa
tttaatacacgcgaaacacgttttttcgaaataatttcgctattcgcgaa
aatttgtaacacgcgaaaatatataccaataaggtacccctggacattgg
aattttttggtattttttcaatacccctggacaattcatcctccaccccc
catgaacggattttttctggaagagcccaatgatgCAAATAATGAATATT
TAAAAGCCAAATTTTCACAAATTCAGCATGGGGTTTCAAAATGTATAATG
ACAATTCTCTGTCAAatttgaaaagtcaattttgaCCTTGTAGCCTATAA
TATTAATGAGAAATTTGCTTTCCTTATAGGATATGTCAAAACCACAAAAG
CCTTCCTTGCCTTGGGAATTGTTGGATATGCTGCAATAACAATCTATACA
TTATTAACTGCATTGACAAGAAAATTATGCTACAAAGTCCTTGGATCTAT
TACAGTTATTACAGGTAAATTTTTTACAAGAAACTAACAGAAATAGTTTT
CACAGATATTAGTAATCTTAAGCATTCCCCctttaaaatgcttataaata
atGTTTGATTCCCAATAGCTATTTGAATTATTAAAGGCAATATATAAGGA
AGTGGTTTAATTGTTAAGAAAATATTGTTTAATGGAAGAATATTTACTTA
TCTAACGAGAAATGTTACCTCTGAGACCTTTTAGATGATAATTACATCCT
GAAAAAGTAAAAGACTTTGGTTTGAATTTGTACTAATTTTATTAtaatgc
aaaatttgaattccttttaagcttttttcatcATGGTTGGTATGGCAACA
TACACAGACCAACATCCAGACAAAGGTGATAACATGGAATATGGATGGTC
TTTCGACCTTGGATGGGTTTCATTTGTTTTGACTCTCGTAGCAGGAATCT
TGGCATTTTTCGGTGACGTAGaatatgaaaaagtttaatCTGAATGGATA
AAAGTAGATCATTACTTTCTTTTGTAATTACTGNTGACGTAGaatatgaa
aaagtttaatCTGAATGGATAAAAGTAGATCATTGCTTTCTTTTGTAATT
ACTGGGTCATTCATTATACTTTGAAATGCACTTAGCAACGACATGGTGAC
CTTTACGTATCTTGACATCAAACATACACACCTTggataaaaaaaaagag
aaacccATTCAAACAAACATCAAGGGCACTGTACTGCATATCTCGTTAAT
TtatgaattgatttttttgtactttttaataTACACTTTTGTACTGATAA
CGCAGACTGTAGAATGTttatttttaatgcattttcctACAATAATACAT
ACAGGTTGTTTATAATCATTTAAAAATTACCGTCTCCCTTATCAACAGAA
TTTATGCTCACATACAATTTTCACAGCCAAAATGAAACAGCGATTGTAAA
AACCTTCTTAGATTCCAAATAGAGTGAGTCATAAAGTGTTTTTAGAGATC
ATATTTCGGTTGAAAATTATTGATAGTTGATGGATTATATGGCCCATACT
TCAAAGGTGAGAAAATTGAGCCAAAATATATGTTAAAAGCAAGCAAAGTA
TTTTATGTTAAGCATTACCATACCTTCAAAACAACTGTACACAAATGTTT
GATTGTTACTTTTACCTAAAGCTaaattttagggaaattccgaaaatccc
aGACAAAGTGTACAGTTATTTTGAAGTACAATTGACGCTTTCTATAGCTC
gatattcgataatattgaaagtcgcaGCCGCCAATGAGAAACTCTCACAA
ACAACACTCTGCTATTCGATATGAAAACCCAATTTCCCTTAAGTTATTAA
TAATCGAatttgagagcgtcaacaacctcgttccctgcgtattatcagct
ttttgatgctaaATGACagcaatgtcaattgaatactAATATTTCTAGTG
ACTATGCTGACAGTGCCAGATAATAAATACCCTAGacaagagcagccgcc
ggcggatttttctgaaatatctgttctttttttccaggagagtaaatttt
agAGATAAATCTAGGAGATACTTGCCTCAAAACACCCAGTTAAAATCCAG
GAGTCGCCTTAAaaacatctgttcttaaaatccaggagcacatgTTACGG
AGAAACACATGTAATTTTCCAGCAGAC Run BLAST on NCBI transcript from alignment at scaffold_442:127016..129542+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065667 ID=TCONS_00065667|Name=TCONS_00065667|organism=Clytia hemisphaerica|type=transcript|length=2527bp|location=Sequence derived from alignment at scaffold_442:127016..129542+ (Clytia hemisphaerica)
Attgcaatgggctcttccagaaaaaatccgttcatgggggtggaggatat
attatttttttcatgaattacccctggacattttgatttttaaccccctg
ggcAAACATCAAATccaccccgtggacacaaaaaattaccttattggtat
atattttcgcgtgttacaaattttcgcgggtacttaatttcgcaagtttt
ttggtcaattttcgcaaaatttaatactgtttaaatttttcaaaattaca
aaatcgctaaattaaatacacgcgaaaaatcttttcttagtattttgtta
gtatttttacatcaaaaacgttgtgtttcaagcaaaatcagtctttttct
tgctttacattcccactttctgaaaatacctagtttagtgaatcgcgaaa
tttaatacacgcgaaacacgttttttcgaaataatttcgctattcgcgaa
aatttgtaacacgcgaaaatatataccaataaggtacccctggacattgg
aattttttggtattttttcaatacccctggacaattcatcctccaccccc
catgaacggattttttctggaagagcccaatgatgCAAATAATGAATATT
TAAAAGCCAAATTTTCACAAATTCAGCATGGGGTTTCAAAATGTATAATG
ACAATTCTCTGTCAAatttgaaaagtcaattttgaCCTTGTAGCCTATAA
TATTAATGAGAAATTTGCTTTCCTTATAGGATATGTCAAAACCACAAAAG
CCTTCCTTGCCTTGGGAATTGTTGGATATGCTGCAATAACAATCTATACA
TTATTAACTGCATTGACAAGAAAATTATGCTACAAAGTCCTTGGATCTAT
TACAGTTATTACAGGTAAATTTTTTACAAGAAACTAACAGAAATAGTTTT
CACAGATATTAGTAATCTTAAGCATTCCCCctttaaaatgcttataaata
atGTTTGATTCCCAATAGCTATTTGAATTATTAAAGGCAATATATAAGGA
AGTGGTTTAATTGTTAAGAAAATATTGTTTAATGGAAGAATATTTACTTA
TCTAACGAGAAATGTTACCTCTGAGACCTTTTAGATGATAATTACATCCT
GAAAAAGTAAAAGACTTTGGTTTGAATTTGTACTAATTTTATTAtaatgc
aaaatttgaattccttttaagcttttttcatcATGGTTGGTATGGCAACA
TACACAGACCAACATCCAGACAAAGGTGATAACATGGAATATGGATGGTC
TTTCGACCTTGGATGGGTTTCATTTGTTTTGACTCTCGTAGCAGGAATCT
TGGCATTTTTCGGTGACGTAGaatatgaaaaagtttaatCTGAATGGATA
AAAGTAGATCATTACTTTCTTTTGTAATTACTGNTGACGTAGaatatgaa
aaagtttaatCTGAATGGATAAAAGTAGATCATTGCTTTCTTTTGTAATT
ACTGGGTCATTCATTATACTTTGAAATGCACTTAGCAACGACATGGTGAC
CTTTACGTATCTTGACATCAAACATACACACCTTggataaaaaaaaagag
aaacccATTCAAACAAACATCAAGGGCACTGTACTGCATATCTCGTTAAT
TtatgaattgatttttttgtactttttaataTACACTTTTGTACTGATAA
CGCAGACTGTAGAATGTttatttttaatgcattttcctACAATAATACAT
ACAGGTTGTTTATAATCATTTAAAAATTACCGTCTCCCTTATCAACAGAA
TTTATGCTCACATACAATTTTCACAGCCAAAATGAAACAGCGATTGTAAA
AACCTTCTTAGATTCCAAATAGAGTGAGTCATAAAGTGTTTTTAGAGATC
ATATTTCGGTTGAAAATTATTGATAGTTGATGGATTATATGGCCCATACT
TCAAAGGTGAGAAAATTGAGCCAAAATATATGTTAAAAGCAAGCAAAGTA
TTTTATGTTAAGCATTACCATACCTTCAAAACAACTGTACACAAATGTTT
GATTGTTACTTTTACCTAAAGCTaaattttagggaaattccgaaaatccc
aGACAAAGTGTACAGTTATTTTGAAGTACAATTGACGCTTTCTATAGCTC
gatattcgataatattgaaagtcgcaGCCGCCAATGAGAAACTCTCACAA
ACAACACTCTGCTATTCGATATGAAAACCCAATTTCCCTTAAGTTATTAA
TAATCGAatttgagagcgtcaacaacctcgttccctgcgtattatcagct
ttttgatgctaaATGACagcaatgtcaattgaatactAATATTTCTAGTG
ACTATGCTGACAGTGCCAGATAATAAATACCCTAGacaagagcagccgcc
ggcggatttttctgaaatatctgttctttttttccaggagagtaaatttt
agAGATAAATCTAGGAGATACTTGCCTCAAAACACCCAGTTAAAATCCAG
GAGTCGCCTTAAaaacatctgttcttaaaatccaggagcacatgTTACGG
AGAAACACATGTAATTTTCCAGCAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065667-exon-scaffold_442-1491911889:127016..129542 | TCONS_00065667-exon-scaffold_442-1491911889:127016..129542 | Clytia hemisphaerica | exon |
| TCONS_00065667-exon-scaffold_442-1510915933:127016..129542 | TCONS_00065667-exon-scaffold_442-1510915933:127016..129542 | Clytia hemisphaerica | exon |
| TCONS_00065667-exon-scaffold_442-1575043694:127016..129542 | TCONS_00065667-exon-scaffold_442-1575043694:127016..129542 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_442 | supercontig | scaffold_442:127016..129542 + |
Blast
The following BLAST results are available for this feature:
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