TCONS_00065650 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065650
Unique NameTCONS_00065650
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1232

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065650 ID=TCONS_00065650|Name=TCONS_00065650|organism=Clytia hemisphaerica|type=transcript|length=1232bp
ATCTTTTCCGATATTGAACCAAAAATAGTCATGCGAGCGGGAGACACGAA
CTGTTAAATTATTAGAGGACTGCCCCTTTTCTGATTTTCTTATAATCTAA
TGCGACAAAAGCTGTACGATGGAGAGGGAGCAATCAATCTTTAGTCTTTA
GCTTTTCTTCATCAATTATTGATAATGAGGGGAGGGAAAGACCAAAGAGC
GTCGAGAAAAAGACAACTCTCCATCGTTTTTATAATTGGTGTTTGCGAAG
CAGCTGTGAACATTTAAGAGATCAATAGACCCTGAATTATATTCAACCAA
CACAATCAATTCTTTCAAGCCgcattcaaataaaaagaaagctttattca
aaaaaaataataatacaaaaaaaaacttgaatgcatttttttttctttca
aaaaaaattgaagatttttgaatttgttgTGAAGAGAGAAAGAGgagata
aaaaaatcataagatCGAAGATTAAAAAGAAGGAACcaacgaaaaaagat
ttttcttcttAAAAGTCACTAACATAAAACTTATATACGTACGAATTAGC
AAGACTGACCTAAAGAAAACACACGCATAATATGCTATAATAATATCATA
AAGAGAAGTTGATCTCTTGTCATCATTGATCgatcaactttttttataat
tgttCTCTGTGTTGATCTTTCATCTTATAAtcataacaaaaagaaattgg
aTGTCATATTTTGGATGACACAAAAGAATAGGAAATTATATCAAGAAACG
GTTTTTTTTGTGTCATACTTAGCAACGTTTTATAGTGACAGTGtgttgta
tttttttgtgagtGAAAAGACAAAGATACAGAATGGCAGaTACATCGGAA
TCTGAGTTGATAGTCGTGCAACCATTATCACCACCGAACCTCCCTGaaaa
tgctgatgtcagcattggCGAACAAAACAATAACATTGGTAGCAACGAGG
GAGCAGGGGATCAGAAAAATATgCTGGAAGACTTCACAACGATAGCATCT
CCTATGCCAATGACGATTGTGCCGTGTTTTGTGTGTGGCGATCGATCTTC
GGGACGTCATTACGGCGTCCTGACGTGCGACGGCTGTCGTGGGTTTTTTA
AACGAAGCGTTAGACGGGGAGTTGGATACCATTGCCGTGATAAAGGGCGA
TGCGTTGTGAATCTGAGTCGACGAAATCAATGTCAGAGTTGCAGGTTTAA
GAAATGTTTGAGTGTTGGTATGAGAAAAGAGG
Run BLAST on NCBI

transcript from alignment at scaffold_441:19767..22427+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065650 ID=TCONS_00065650|Name=TCONS_00065650|organism=Clytia hemisphaerica|type=transcript|length=2661bp|location=Sequence derived from alignment at scaffold_441:19767..22427+ (Clytia hemisphaerica)
ATCTTTTCCGATATTGAACCAAAAATAGTCATGCGAGCGGGAGACACGAA
CTGTTAAATTATTAGAGGACTGCCCCTTTTCTGATTTTCTTATAATCTAA
TGCGACAAAAGCTGTACGATGGAGAGGGAGCAATCAATCTTTAGTCTTTA
GCTTTTCTTCATCAATTATTGATAATGAGGGGAGGGAAAGACCAAAGAGC
GTCGAGAAAAAGACAACTCTCCATCGTTTTTATAATTGGTGTTTGCGAAG
CAGCTGTGAACATTTAAGAGATCAATAGACCCTGAATTATATTCAACCAA
CACAATCAATTCTTTCAAGCCgcattcaaataaaaagaaagctttattca
aaaaaaataataatacaaaaaaaaacttgaatgcatttttttttctttca
aaaaaaattgaagatttttgaatttgttgTGAAGAGAGAAAGAGgagata
aaaaaatcataagatCGAAGATTAAAAAGAAGGAACcaacgaaaaaagat
ttttcttcttAAAAGTCACTAACATAAAACTTATATACGTACGAATTAGC
AAGACTGACCTAAAGAAAACACACGCATAATATGCTATAATAATATCATA
AAGAGAAGTTGATCTCTTGTCATCATTGATCgatcaactttttttataat
tgttCTCTGTGTTGATCTTTCATCTTATAAtcataacaaaaagaaattgg
aTGTCATATTTTGGATGACACAAAAGAATAGGAAATTATATCAAGAAACG
GTTTTTTTTGTGTCATACTTAGCAACGTTTTATAGTGACAGTGtgttgta
tttttttgtgagtGAAAAGACAAAGATACAGAATGGCAGGTAAtataata
atttcttttttatacatTATCATAATTTTTGAGCATGATTTTTTATAGCT
AGCTGCAATGATCTTTCAGTATGGATTTCGAGCAGCTTGCAATCGAATAC
AGTATCCAATAATTTATAACTTACAGAGTTTACTTAGCCATTCTTTCCCC
GTTTTTAGCTAGGAATTAAGGTATGGATGAGCAAAACAGGAAAATTTAgg
gcaattcatgatattcatgatgtaatctttgcgCCTAAACGATAGATGTT
ACGTAACAACNCCATTCTTTCCCCGTTTTTAGCTAGGAATTAAGGTATGG
ATGAGCAAAACAGGAAAATTTAgggcaattcatgatattcatgatgtaat
ctttgcgCCTAAACGATAGATGTTACGTAACAACTTTGCCGCCATTATTG
GGGTCCTTGCTTGGAAAACCTTGGGGAACGCATTtgttttgccaccaata
atATGGCGGCCAAATTTTTTGATTCGGAGTGTCAATCAacgaaaagatta
catcatgaatatcaagaattttcttGTTGCAATTTATCTGTAAGAACAAT
AAGTCTCAACCAggggaaaaatcaaaacttgatATGTAAGCATCTGAAGC
ATAAGTTTAGGTACAAAGTGGCCTTAAGATAAAAACATCCAAGAGATTAA
ACCCTAGAGAGACTGGTTcgagatacacgtttttttataaaaacatccac
atCTTGGGATGTTCACaactttttgcaattttagcctaaaatgttcttaa
catgttctctttttaccattttgtgagtatttttggccattttcgtaaag
gattgggtgttttagagtccgcaaagccttaaaattatcttaacttgttc
ttagtattttggccatcgatgAAGCTTCTtatattgtttgttcttataag
aaaagacGTGTTAAATTAaccctcttttatcttttccagaTACATCGGAA
TCTGAGTTGATAGTCGTGCAACCATTATCACCACCGAACCTCCCTGaaaa
tgctgatgtcagcattggCGAACAAAACAATAACATTGGTAGCAACGAGG
GAGCAGGGGATCAGAAAAATATggtaattcaaaattcaaaatttactcTC
TTAAAAGGTCGTGATTTTTCataatttggacaaaaatggaGTGAACATCg
ataagaattttgaaaaaagtctcaGAAACGCCAATTTCCCTcactaaggg
tcgattttcgatttttggttCGGACATATTAAATAAAATAGTTTAAGAAT
GAAAAGCTGCCTATAAACATTGCTTAATCTAGGTCAATTTTAGAAGGAAT
CATAGTAGTAAAACCTGAGATGTTTCGTTTGTGTCATTAAAATAAGAACA
CGGTAAGAACAATGAGAACAATGGGCTGGTAGTAGATATACGAGATCAAG
TTGGCCTTGAGCTTTGGCAcgttttttatttcatatttttttcctgattt
ctcACCTTCGACTGCTGAAATTCTCCCAGCTCTTCCAGTAGATGATTGTT
CTTATAAGTTATTCCTATATTAATAATTTtctaattattttcttttcata
aGCTGGAAGACTTCACAACGATAGCATCTCCTATGCCAATGACGATTGTG
CCGTGTTTTGTGTGTGGCGATCGATCTTCGGGACGTCATTACGGCGTCCT
GACGTGCGACGGCTGTCGTGGGTTTTTTAAACGAAGCGTTAGACGGGGAG
TTGGATACCATTGCCGTGATAAAGGGCGATGCGTTGTGAATCTGAGTCGA
CGAAATCAATGTCAGAGTTGCAGGTTTAAGAAATGTTTGAGTGTTGGTAT
GAGAAAAGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041137XLOC_041137Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065650-exon-scaffold_441-1491911889:19767..20605TCONS_00065650-exon-scaffold_441-1491911889:19767..20605Clytia hemisphaericaexon
TCONS_00065650-exon-scaffold_441-1510915933:19767..20605TCONS_00065650-exon-scaffold_441-1510915933:19767..20605Clytia hemisphaericaexon
TCONS_00065650-exon-scaffold_441-1575043694:19767..20605TCONS_00065650-exon-scaffold_441-1575043694:19767..20605Clytia hemisphaericaexon
TCONS_00065650-exon-scaffold_441-1491911889:21556..21689TCONS_00065650-exon-scaffold_441-1491911889:21556..21689Clytia hemisphaericaexon
TCONS_00065650-exon-scaffold_441-1510915933:21556..21689TCONS_00065650-exon-scaffold_441-1510915933:21556..21689Clytia hemisphaericaexon
TCONS_00065650-exon-scaffold_441-1575043694:21556..21689TCONS_00065650-exon-scaffold_441-1575043694:21556..21689Clytia hemisphaericaexon
TCONS_00065650-exon-scaffold_441-1491911889:22169..22427TCONS_00065650-exon-scaffold_441-1491911889:22169..22427Clytia hemisphaericaexon
TCONS_00065650-exon-scaffold_441-1510915933:22169..22427TCONS_00065650-exon-scaffold_441-1510915933:22169..22427Clytia hemisphaericaexon
TCONS_00065650-exon-scaffold_441-1575043694:22169..22427TCONS_00065650-exon-scaffold_441-1575043694:22169..22427Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_441supercontigscaffold_441:19767..22427 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.520641	0.546225	0.0539511	0.0541234	0.771771	0.568152	1.02539	1.23418	0.151044	0	0.0509563	0.143527	0.11862	0	0	0.0356149	0.0395459	0	0.0552349	0	0.124038	0	0	0.11677	0.23933	0.482154	0.0906655	0	0	0
Blast
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BLAST of TCONS_00065650 vs. Swiss-Prot (Human)
Match: NR2F6 (Nuclear receptor subfamily 2 group F member 6 OS=Homo sapiens GN=NR2F6 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 3.072e-24
Identity = 45/75 (60.00%), Postives = 53/75 (70.67%), Query Frame = 2 
Query: 1007 PMTIVPCFVCGDRSSGRHYGVLTCDGCRGFFKRSVRRGVGYHCRDKGRCVVNLSRRNQCQSCRFKKCLSVGMRKE 1231
            P   V C VCGD+SSG+HYGV TC+GC+ FFKRS+RR + Y CR    C ++   RNQCQ CR KKC  VGMRKE
Sbjct:   50 PGLQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQCQYCRLKKCFRVGMRKE 124
The following BLAST results are available for this feature:
BLAST of TCONS_00065650 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NR2F63.072e-2460.00Nuclear receptor subfamily 2 group F member 6 OS=H... [more]
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