Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065557 ID=TCONS_00065557|Name=TCONS_00065557|organism=Clytia hemisphaerica|type=transcript|length=1601bpRun BLAST on NCBI protein sequence of TCONS_00065557-protein >TCONS_00065557-protein ID=TCONS_00065557-protein|Name=TCONS_00065557-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp MSIPNSPGGKPSAANIAAANIAMGIPSMQDVCLLPEITTPTVNDNRPFQCRun BLAST on NCBI transcript from alignment at scaffold_440:342597..344328+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065557 ID=TCONS_00065557|Name=TCONS_00065557|organism=Clytia hemisphaerica|type=transcript|length=1732bp|location=Sequence derived from alignment at scaffold_440:342597..344328+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_440:342597..344328+ >TCONS_00065557 ID=TCONS_00065557|Name=TCONS_00065557|organism=Clytia hemisphaerica|type=CDS|length=2034bp|location=Sequence derived from alignment at scaffold_440:342597..344328+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065557 vs. Swiss-Prot (Human)
Match: ZN135 (Zinc finger protein 135 OS=Homo sapiens GN=ZNF135 PE=2 SV=3) HSP 1 Score: 108.227 bits (269), Expect = 1.073e-24 Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = 1 Query: 169 TVNDNRPFQCTICGNRFRQQCHLTQHIRIHTNDRPYHCSHCEKAFKQKSQLNQHERIHTGEKPYQCHLCAKAFPQAGQLYSHKKTH 426 T +P++C+ CG FRQ HLTQH+RIHT ++PY C C KAF S L +H+RIHTGEKPY+CH C KAF Q L H++TH Sbjct: 319 THTGEKPYECSECGKAFRQSIHLTQHLRIHTGEKPYQCGECGKAFSHSSSLTKHQRIHTGEKPYECHECGKAFTQITPLIQHQRTH 404 HSP 2 Score: 100.908 bits (250), Expect = 2.675e-22 Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 1 Query: 169 TVNDNRPFQCTICGNRFRQQCHLTQHIRIHTNDRPYHCSHCEKAFKQKSQLNQHERIHTGEKPYQCHLCAKAFPQAGQLYSHKKTH 426 T +P++C+ CG FRQ HLTQH RIHT ++PY C+ C KAF S L +H+RIHTGEKPY+C+ C +AF Q L H++ H Sbjct: 459 THTGEKPYECSQCGKAFRQSTHLTQHQRIHTGEKPYECNDCGKAFSHSSSLTKHQRIHTGEKPYECNQCGRAFSQLAPLIQHQRIH 544 HSP 3 Score: 93.5893 bits (231), Expect = 5.648e-20 Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 1 Query: 175 NDNRPFQCTICGNRFRQQCHLTQHIRIHTNDRPYHCSHCEKAFKQKSQLNQHERIHTGEKPYQCHLCAKAFPQAGQLYSHKKTH 426 +P+ C CG F L+QH R HT ++PY CS C KAF+Q + L QH+RIHTGEKPY+C+ C KAF + L H++ H Sbjct: 433 TGEKPYGCNECGKTFSHSSSLSQHERTHTGEKPYECSQCGKAFRQSTHLTQHQRIHTGEKPYECNDCGKAFSHSSSLTKHQRIH 516 HSP 4 Score: 93.2041 bits (230), Expect = 7.552e-20 Identity = 42/86 (48.84%), Postives = 54/86 (62.79%), Query Frame = 1 Query: 169 TVNDNRPFQCTICGNRFRQQCHLTQHIRIHTNDRPYHCSHCEKAFKQKSQLNQHERIHTGEKPYQCHLCAKAFPQAGQLYSHKKTH 426 T +P++C CG F Q LT+H RIHT ++PY C+ C K F S L+QHER HTGEKPY+C C KAF Q+ L H++ H Sbjct: 403 THTGEKPYECGECGKAFSQSTLLTEHRRIHTGEKPYGCNECGKTFSHSSSLSQHERTHTGEKPYECSQCGKAFRQSTHLTQHQRIH 488 HSP 5 Score: 91.6633 bits (226), Expect = 2.005e-19 Identity = 43/97 (44.33%), Postives = 60/97 (61.86%), Query Frame = 1 Query: 175 NDNRPFQCTICGNRFRQQCHLTQHIRIHTNDRPYHCSHCEKAFKQKSQLNQHERIHTGEKPYQCHLCAKAFPQAGQLYSHKKTHGINPRVTKDPPEG 465 +P++C CG F LT+H RIHT ++PY C+ C +AF Q + L QH+RIHTGEKPY+C+ C +AF Q+ L H++ H TK+ P G Sbjct: 489 TGEKPYECNDCGKAFSHSSSLTKHQRIHTGEKPYECNQCGRAFSQLAPLIQHQRIHTGEKPYECNQCGRAFSQSSLLIEHQRIH------TKEKPYG 579 HSP 6 Score: 86.6557 bits (213), Expect = 7.459e-18 Identity = 39/84 (46.43%), Postives = 50/84 (59.52%), Query Frame = 1 Query: 175 NDNRPFQCTICGNRFRQQCHLTQHIRIHTNDRPYHCSHCEKAFKQKSQLNQHERIHTGEKPYQCHLCAKAFPQAGQLYSHKKTH 426 +P++C CG F Q L QH R HT ++PY C C KAF Q + L +H RIHTGEKPY C+ C K F + L H++TH Sbjct: 377 TGEKPYECHECGKAFTQITPLIQHQRTHTGEKPYECGECGKAFSQSTLLTEHRRIHTGEKPYGCNECGKTFSHSSSLSQHERTH 460 HSP 7 Score: 86.6557 bits (213), Expect = 7.862e-18 Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 1 Query: 169 TVNDNRPFQCTICGNRFRQQCHLTQHIRIHTNDRPYHCSHCEKAFKQKSQLNQHERIHTGEKPYQCHLCAKAFPQAGQLYSHKKTH 426 T +P++C+ CG F + +QH R HT ++PY CS C KAF+Q L QH RIHTGEKPYQC C KAF + L H++ H Sbjct: 291 THTGEKPYECSECGKSFSFRSSFSQHERTHTGEKPYECSECGKAFRQSIHLTQHLRIHTGEKPYQCGECGKAFSHSSSLTKHQRIH 376 HSP 8 Score: 85.1149 bits (209), Expect = 2.413e-17 Identity = 43/94 (45.74%), Postives = 58/94 (61.70%), Query Frame = 1 Query: 175 NDNRPFQCTICGNRFRQQCHLTQHIRIHTNDRPYHCSHCEKAFKQKSQLNQHERIHTGEKPYQCHLCAKAFPQAGQLYSHKKTH-GINPRVTKD 453 +P++C CG F Q L +H RIHT ++PY C+ C K+F S L+QHER HTGEKPY+CH C K+F Q+ L H++ H G P +D Sbjct: 545 TGEKPYECNQCGRAFSQSSLLIEHQRIHTKEKPYGCNECGKSFSHSSSLSQHERTHTGEKPYECHDCGKSFRQSTHLTQHRRIHTGEKPYACRD 638 HSP 9 Score: 84.7297 bits (208), Expect = 3.278e-17 Identity = 38/86 (44.19%), Postives = 50/86 (58.14%), Query Frame = 1 Query: 169 TVNDNRPFQCTICGNRFRQQCHLTQHIRIHTNDRPYHCSHCEKAFKQKSQLNQHERIHTGEKPYQCHLCAKAFPQAGQLYSHKKTH 426 T +P++C CG F L +H R HT +RPY C C K F+ S L +H+RIHTGEKPY+C C + F Q L H++TH Sbjct: 207 TCVKEKPYKCQECGKAFSHSSALIEHHRTHTGERPYECHECLKGFRNSSALTKHQRIHTGEKPYKCTQCGRTFNQIAPLIQHQRTH 292 HSP 10 Score: 82.8037 bits (203), Expect = 1.516e-16 Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = 1 Query: 184 RPFQCTICGNRFRQQCHLTQHIRIHTNDRPYHCSHCEKAFKQKSQLNQHERIHTGEKPYQCHLCAKAFPQAGQLYSHKKTH 426 +P+ C CG F L+QH R HT ++PY C C K+F+Q + L QH RIHTGEKPY C C KAF + L H++TH Sbjct: 576 KPYGCNECGKSFSHSSSLSQHERTHTGEKPYECHDCGKSFRQSTHLTQHRRIHTGEKPYACRDCGKAFTHSSSLTKHQRTH 656 HSP 11 Score: 80.8777 bits (198), Expect = 5.986e-16 Identity = 41/84 (48.81%), Postives = 52/84 (61.90%), Query Frame = 1 Query: 175 NDNRPFQCTICGNRFRQQCHLTQHIRIHTNDRPYHCSHCEKAFKQKSQLNQHERIHTGEKPYQCHLCAKAFPQAGQLYSHKKTH 426 +P++CT CG F Q L QH R HT ++PY CS C K+F +S +QHER HTGEKPY+C C KAF Q+ L H + H Sbjct: 265 TGEKPYKCTQCGRTFNQIAPLIQHQRTHTGEKPYECSECGKSFSFRSSFSQHERTHTGEKPYECSECGKAFRQSIHLTQHLRIH 348 The following BLAST results are available for this feature:
BLAST of TCONS_00065557 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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