TCONS_00070998 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070998
Unique NameTCONS_00070998
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2089

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070998 ID=TCONS_00070998|Name=TCONS_00070998|organism=Clytia hemisphaerica|type=transcript|length=2089bp
TTACAAATGACATTCAAACGTTGAAACATAATCAACTTTTCTtggttttt
tgaatttttagagTTGAAAACTGTAAAAATTGTGGATTTTAGAAGAGCGA
AGATTATTAAACAAACTgagtataatattttttttgatccGAAGGTAATC
CTCTCcagattttgtgaaaaaatcgACCAACCGCAAGTTTCAACTGAAGA
AGTCACAAATCCTAATCAGATTAACTTCGCTTTGTCAGCACAAAATAGAG
CAACGCGGCTCTTCAGGAGTTGAATTTTAATTTGGATTTATCTTTTGATC
GAACAGTTCTGTGGAAAAAGTTCATTTTACGGAAAGATGAAGCTGAAGCT
ACTTGTTGTCTTTTTTTGgatgctgaaaatttcaaactgcaAAGAATTAA
AAGAAAAAAACCCACTGCACAATGCGACACACTACTGGAACATGAACAAA
TATAACAAATGGGAGGCCAAAGACTCCATCACCCAACTTCACCTCAAGTT
CAAGAATCGTGGCGTGAGCGTGGAGAAACAGAAACAGCTTGGAAACGTTC
TGCAGTTAGATGGACGAATAAGCTGGTTGGAGATTCCGCACCTCCAAGAC
AAATGCTTAACTTCGGTATCGTGCACTCGGGGCATGACTTTTAGTTTTTG
GATGAAATATAAGAGTGGTGATTACATAATGTCTGCCGGAAAGATTGCCG
TCAGTGAAGAATTCATGAGTGGATTCCGGTTGCAGAGAGATCCGTTGACC
AATTTCTTCATTTTGGAGATCATCAGTGAGGAGTCACAGAGAATATGGAA
GATCTACTTGAAGGAATTGCCCAAATCATGGTTCCATTTCCTTTTCACGT
GGCAAAGCAACGAGGGCGCTAGATTGTATATCGACGGAGATTTGAAGCTA
ACGAGAAGGCTTTCTGAGCCTGCTCCAAACAATAATGTGGAGCTGTCAAA
CTCTTTGGGTGAGAGAGACGCACATAAAGTAACTTTTGGGCAGATTGGTT
CATTACGTGAAATGGATGATCGAGGCGAATTTGAAATCTCTCACATAGCA
ATATGGAAGAAGGTTTTAACAGATGAAGATATcataaaagtttacaaaaa
tacGGTGGCAACGGATGATGACGTCACCTTTTGTTGCAATGGAAAGAAAA
ACGCCCTTGGCGGAGCATGCGCAAAATGGGACAGCTATTCTTGCATTTGC
ACAGAACTGAAGAAAGAAGATATTTGTCGGAAACCCATCCTTACACCAGC
AAAGTTCACAGAAACCAAAAAAGAATGCGTCGACTTAAACCCACACTGCG
ATAAACTAGTTAACAATCAAGTGAGAGGATATTGTGAAAGTTTTGTTGAT
TCAGCGATGACTGACTGTAAATATTCCTGCAGGTGTAAACCAGTGACGCA
GATGATGATGAGTCGTCAACCAAAACAACATTTCACCCAAGAAGCTCTCA
TCTTTGCATTGTTGGGGTGTATCGGGGGCCTTATTCTTTTGTTCGGCATC
ATGTTTTACTTTTGGAAAGTCTATAGAACgcgTTACCATGGAGCTTTTGT
TCCGCCCTCCAGCAAATCGAACAGTTTGATAGACGTCCCTCCAGAGTACG
ATGATATGAAGTGGCCCTCAAAATATGTCGATTCACACGCCTTCTTTATC
AAAGATGTCCCGCCCAAGAAAAGGGCGCTTCCTCTTATCCCCGCCAATAA
AAGCTCTAACTACAGGTATCAACCTCCAGAATTCGATTAAAATGGTGAAG
TGTCGAGTTGTccaggaaaaatgaaaagattctTCGTGGAAAACAAGGCT
TCTTTCTAAGCTTTGTTTTGAATAGAGTGGAGTAATTCTATATTTCTTAA
CCGTCGCATGTACTCTAAGGTCCCAAAACGTCTCCCCCTACttgtcaatt
ttcaaaaaaatttcagatcCCCCTTCCGTTCTTATTAGGACCCTCCcgtt
tattttaaatattttcatatctaTCAAAACCTGAATTGCTCTAAAATAGC
CTGGTGTAAGATAACTGTTCAGATAAGGTCTTTGTTAATCgttgaaaaat
tttaagattttgacaaTATATTGCTTATTCTTTcctcaa
Run BLAST on NCBI

transcript from alignment at scaffold_58:894384..900078-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070998 ID=TCONS_00070998|Name=TCONS_00070998|organism=Clytia hemisphaerica|type=transcript|length=5695bp|location=Sequence derived from alignment at scaffold_58:894384..900078- (Clytia hemisphaerica)
TTACAAATGACATTCAAACGTTGAAACATAATCAACTTTTCTTGGTTTTT
TGAATTTTTAGAGTTGAAAACTGTAAAAATTGTGGATTTTAGAAGAGCGA
AGATTATTAAACAAACTGAGTATAATATTTTTTTTGATCCGAAGGTAATC
CTCTCCAGATTTTGTGAAAAAATCGACCAACCGCAAGTTTCAACTGAAGA
AGTCACAAATCCTAATCAGATTAACTTCGCTTTGTCAGCACAAAATAGAG
CAACGCGGCTCTTCAGGAGTTGAATTTTAATTTGGATTTATCTTTTGATC
GAACAGTTCTGTGGAAAAAGTTCATTTTACGGAAAGATGAAGCTGAAGCT
ACTTGTTGTCTTTTTTTGGATGCTGAAAATTTCAAACTGCAAAGAATTAA
AAGAAAGTAAGATATTCTTCTCTTTGTGCTACTTATGAAAATTTGATTTG
TTAAAAAATTATCCAAAAATAGATCTTTTGTAAAACATAAGTGTCACATA
GTCAATATTTGAAAGACTTCGATATTGATTTCAAGGTCAAGTTATTTTCC
TGTAGTGACCAAAAGGGTCTCTAATCTAAGAGCGAGAAGACGCCGATCCT
AGACTATCATCCATGCAAACTTTCGGGATATCTTTCAGTATCTGATGTTT
TAATTCATTTTGACTGAAAAATGTCGTTATAAAATCCGCCTTCTAGAGTA
AAAACCGACAATACGGTTAGTACCAAAGGAGGGAGTCGAGAAGAAAAAAC
TTCGGGGAAGAATACAGGAAGAAATTCTTTCAGAAGCTTTCCCCCATCTG
TTATGATGATGAGTTTTTCTCTTTATGAAAAATTGGGGAAAGATTTTATC
AGGGGAGTTTGGTGATGACAAAAATTCAATAATAAAATACTAACTTTAAA
TGAATTTTCTCCAGATGGCCTCGTCCGCCTGTTGTTTTCATTTTTATGTT
ATTTCGAATGTCAAATTACATTTTTTAAATCTGTGTTCTTAAAAAATATC
GAACATCTCTTTTTTTCGCTTGTCCTCATAGGCTGCAGGCATCCCCTCTG
ATATGTTTTGATATAGAGGATGCTAATCGTGTACGTGTATAAAACTTCTG
TCAAATTTTCAATTTTCTTAAAAAGGTTCAACTAACCGCTAATTTCTGAA
ACTCAAAAACACAAAACGGGGGTAACTCTCGGACGGGAGTTTTATACACG
ATGTGAATCCCTTATATCAAAACAGATCAAAGGGGATTTGTTTAGGCTCT
TTCAGCCCTCCTTGATGCTGAAAATGGTAAAACTCTTCAACCGTATACTT
TTATAACGAAACATTGAAAGGTTGAGTATCGAACTGAAAAGAAGAACTTA
AAAATGATAAAGGACAGGACCTCAGGATTCAAAAGCTCATAAGCCAAAGA
AGCCACTGACCCCTTCCAAAATCGAAATATTCAATGAAGTATAGTGGAAG
TACTAAAATCACAATTCTCGCCCGAACCTTTTAACCCGACACATATTATC
CTTTATAGAAAGATAAAGCAGGGGTTACATCAATTTTGATTCATCTTACT
TTAGAAAACCCACTGCACAATGCGACACACTACTGGAACATGAACAAATA
TAACAAATGGGAGGCCAAAGACTCCATCACCCAACTTCACCTCAAGTTCA
AGAATCGTGGCGTGAGCGTGGAGAAACAGAAACAGCTTGGAAACGTTCTG
CAGTTAGGTGAGGGATATGCAATATTTGATGGGTGACTCCTTAAAGCTAT
TTAAAATTTAGCTCCCAACATCTAAAAATCTAAAATTCCTGTGTTTAGAT
ATTGTTCTATACTGTATATATAAAGAACATTTGCTTAAGATCACATACTT
TAACATCAGGTCTCGAACAATATTATGACTTATTTTTTAAAGTGTTCTTC
AAAGTCAATATTTGAATGAAATTTAAAACACCATACATTTTACAAGAACT
TGAGAAAAACATAAACCTCTCAAAAATATTGAATTTAATCTCGACAGATG
GCCGTTAAAGAGAACATCGTGTGAATTAAATAAACGCCGGGGTTTCTTCA
TATTTTATAACCATTGACTATAACATGTCTACTTCTGCGCATGTGCGCGA
CATAATGACGTAAGCATTTACCAATATTCCAAAAAGCTTTCTGACGTCAC
ACATCAGAGATTTCTTTAGGTTGAGAAGCCTTTCAGACGCGCAAACGGCT
GAAGGTTTGCGGAAGTGTGAACCAGTCTTGAATNTCTTTAGGTTGAAAAG
CCTTTCAGACGCGCAAACGGCTGAAGGTTTGCGGAAGTGTGAACCAGCCT
TGAACACGTCTGTTCTCAAAAGAGGCGGGTCTAGCCATTGAGAGATTCTT
TAACTATATAGAAAAGACAGAAAAGTAGGTTTTATGGGAGATAAAGAATT
GAAAACATATATTTCTTGAACAATTTCGGTTCAAACTTTGCCAAAAATCA
CATTAAACTTAACTTATACGACAATTTTATCATTTAGATGGACGAATAAG
CTGGTTGGAGATTCCGCACCTCCAAGACAAATGCTTAACTTCGGTATCGT
GCACTCGGGGCATGACTTTTAGTTTTTGGATGAAATATAAGAGTGGTGAT
TACATAATGTCTGCCGGAAAGATTGCCGGTAAGTAAACTTCATAAAATGA
CTGTCAAAAACTCTCCAATTGATCGCCTCGGTGAATATAAAGTTGAAAGT
TCAACTTAAATTCAAAACCAGGAACTGTTGAACAACCCGATGCTTATTTA
AATCTAATGAAAGAATTGTTTTTTCCAAAACACGCTTTTATCACACAGTC
TAATGAGTCAATGAGATAGGGGTCTGCAAAAGAGTTTTCCTTGTGGCAAA
CCTTTGATGACAGAATTGTTTTACATTTTCTCTCCATTTTCAGTCAGTGA
AGAATTCATGAGTGGATTCCGGTTGCAGAGAGATCCGTTGACCAATTTCT
TCATTTTGGAGATCATCAGTGAGGAGTCACAGAGAATATGGAAGATCTAC
TTGAAGGAATTGCCCAAATCATGGTTCCATTTCCTTTTCACGTGGCAAAG
CAACGAGGGCGCTAGATTGTATATCGACGGAGATTTGAAGCTAACGAGAA
GGCTTTCTGAGCCTGCTCCAAACAATAATGTGGAGCTGTCAAACTCTTTG
GGTGAGAGAGACGCACATAAAGTAACTTTTGGGCAGATTGGTTCATTACG
TGAAATGGATGATCGAGGCGAATTTGAAATCTCTCACATAGCAATATGGA
AGAAGGTTTTAACAGATGAAGATATCATAAAAGTTTACAAAAATACGGTG
GCAACGGATGATGACGTCACCTTTTGTTGCAATGGAAAGAAAAACGCCCT
TGGTACATTGAAATTGCTTTTTATTTTGAATCTCAAACCACTCAACACTC
TACTGATATTCACAATTATTTCATTCAAAAGTGCACATTTTGGGGTATAC
CAATTTTAATAAACTATTCCTTGTTCTGATGTTGTCATCAGTCGTTTAAA
CTAATATTTATCATATTTTTCAGGCGGAGCATGCGCAAAATGGGACAGCT
ATTCTTGCATTTGCACAGAACTGAAGAAAGAAGATATTTGTCGGAAACCC
ATCCTTACACCAGCAAAGTTCACAGAAACCAAAAAAGGTAATGTTTGCAA
GAAAAGTTCATTTACTATTGTTAATTACTTGCAGAAGTCAAAGTCAGCTA
TCGGTCAGCTCACCCCTTATACGAGAAAACAAATCTATAATCGGCAATCA
ACCTGATAACTTTTTCTTTCATTTGAAAATACAGAATGCGTCGACTTAAA
CCCACACTGCGATAAACTAGTTAACAATCAAGTGAGAGGATATTGTGAAA
GTTTTGTTGATTCAGCGATGACTGACTGTAAATATTCCTGCAGGTGTAAA
CCAGGTAAGAAATTAGCAAAACGTTTTTTACTTTGCCAGGTTTCTAGACT
AAGAACAAATTGCAACTTTTTTCTAAATCAAGGACCGGAGTTTTTTAGTA
GCATTTAGGTCTATTCGGTCAATTTAGACAGTAAAATAAAAAACATGTGA
TCTTCCCTTCCTCAATTTTAATTTGTTGAAATGTTTAGTAGTACAACCGC
GAAATCTTTAATTTGAGAAAATTAAGCCGCGCTTTGAAAATTCCTGATAA
ATAAATGTTCTTTCATGAAGAACGGGCCGATTAGAAAGAAAGTTTTGTTA
CGAATTCATTCTGGTGTGTTTCGAATCGGATGAAGTTTCAAGGAATGTCT
GAAAGTTTCAGACTTCTTTTTCGATTTCAAAGAATTCTTGTACCATAGCA
GCCTGGATATCCTTTTTATTTCTGACGTTTCTATTTTACTAGCAGCTTCC
TAAAGTGATTTGCATTCCATTATCATTCAAATTTTGTGCAAAAATTTGTC
GACCAAGGGCTTATAAACATCTAGGTAGACTAAGCTATAATTAGCAGAAA
CAAATTGATAGCTTGAATATCCAGGCTACAGCAAAGCATGTAACTGAAAA
TCAACCTTTTTAAAACTAATACCAAATAGTGGTATTTCATTGGCGTCAAG
ATCACCAAATCNCCTTCTGGAAATAAACAGAGTTTATTATGGTATGTTAC
TTGGCGTCAAAATCATCTATCTCTTCTCATTCTTTCAGTGACGCAGATGA
TGATGAGTCGTCAACCAAAACAACATTTCACCCAAGAAGCTCTCATCTTT
GCATTGTTGGGGTGTATCGGGGGCCTTATTCTTTTGTTCGGCATCATGTT
TTACTTTTGGAAAGTCTATAGAACGTGAGTATTTTTGTTACATTTTTCTT
TCTCAATTCGAAACTAAACGGAATCTTTAAAGGGAGGAAAATTTCACGAA
GCTTCTTCGTCTTCTTTCCAGCCAATGTTACCCGAGTGAGACGAAAGGTG
AAAGATTCTTGTCTTAAGGAAACGAAAGTTTTCTGTAAAAAAAGGAGGAA
AGAAGACGGAGAAAATTTGTCTAAAATGTAAGTCAATCCATTTCTTGATT
TTTAAGGCCGGTTCATTTAAAAGTTTTGTGTGAAAATCCTTGCACGAATA
CCAAATATTTTATGCAAAAGATTTTGCAAGACAGAAACAAACCAGAAAAA
ACCATCTGTAAAACATTTTTTTTTCTTTTTTTCAGGCGTTACCATGGAGC
TTTTGTTCCGCCCTCCAGCAAATCGAACAGTTTGATAGACGTCCCTCCAG
AGTACGATGATATGAAGTGGCCCTCAAAATATGTCGATTCACACGCCTTC
TTTATCAAAGATGTCCCGCCCAAGAAAAGGGCGCTTCCTCTTATCCCCGC
CAATAAAAGCTCTAACTACAGGTATCAACCTCCAGAATTCGATTAAAATG
GTGAAGTGTCGAGTTGTCCAGGAAAAATGAAAAGATTCTTCGTGGAAAAC
AAGGCTTCTTTCTAAGCTTTGTTTTGAATAGAGTGGAGTAATTCTATATT
TCTTAACCGTCGCATGTACTCTAAGGTCCCAAAACGTCTCCCCCTACTTG
TCAATTTTCAAAAAAATTTCAGATCCCCCTTCCGTTCTTATTAGGACCCT
CCCGTTTATTTTAAATATTTTCATATCTATCAAAACCTGAATTGCTCTAA
AATAGCCTGGTGTAAGATAACTGTTCAGATAAGGTCTTTGTTAATCGTTG
AAAAATTTTAAGATTTTGACAATATATTGCTTATTCTTTCCTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044123XLOC_044123Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070998-exon-scaffold_58-1575043694:899673..900078TCONS_00070998-exon-scaffold_58-1575043694:899673..900078Clytia hemisphaericaexon
TCONS_00070998-exon-scaffold_58-1575043694:898372..898524TCONS_00070998-exon-scaffold_58-1575043694:898372..898524Clytia hemisphaericaexon
TCONS_00070998-exon-scaffold_58-1575043694:897451..897591TCONS_00070998-exon-scaffold_58-1575043694:897451..897591Clytia hemisphaericaexon
TCONS_00070998-exon-scaffold_58-1575043694:896727..897185TCONS_00070998-exon-scaffold_58-1575043694:896727..897185Clytia hemisphaericaexon
TCONS_00070998-exon-scaffold_58-1575043694:896442..896555TCONS_00070998-exon-scaffold_58-1575043694:896442..896555Clytia hemisphaericaexon
TCONS_00070998-exon-scaffold_58-1575043694:896175..896294TCONS_00070998-exon-scaffold_58-1575043694:896175..896294Clytia hemisphaericaexon
TCONS_00070998-exon-scaffold_58-1575043694:895305..895440TCONS_00070998-exon-scaffold_58-1575043694:895305..895440Clytia hemisphaericaexon
TCONS_00070998-exon-scaffold_58-1575043694:894384..894943TCONS_00070998-exon-scaffold_58-1575043694:894384..894943Clytia hemisphaericaexon
TCONS_00070998-exon-scaffold_58-1510915933:899673..900078TCONS_00070998-exon-scaffold_58-1510915933:899673..900078Clytia hemisphaericaexon
TCONS_00070998-exon-scaffold_58-1510915933:898372..898524TCONS_00070998-exon-scaffold_58-1510915933:898372..898524Clytia hemisphaericaexon
TCONS_00070998-exon-scaffold_58-1510915933:897451..897591TCONS_00070998-exon-scaffold_58-1510915933:897451..897591Clytia hemisphaericaexon
TCONS_00070998-exon-scaffold_58-1510915933:896727..897185TCONS_00070998-exon-scaffold_58-1510915933:896727..897185Clytia hemisphaericaexon
TCONS_00070998-exon-scaffold_58-1510915933:896442..896555TCONS_00070998-exon-scaffold_58-1510915933:896442..896555Clytia hemisphaericaexon
TCONS_00070998-exon-scaffold_58-1510915933:896175..896294TCONS_00070998-exon-scaffold_58-1510915933:896175..896294Clytia hemisphaericaexon
TCONS_00070998-exon-scaffold_58-1510915933:895305..895440TCONS_00070998-exon-scaffold_58-1510915933:895305..895440Clytia hemisphaericaexon
TCONS_00070998-exon-scaffold_58-1510915933:894384..894943TCONS_00070998-exon-scaffold_58-1510915933:894384..894943Clytia hemisphaericaexon
TCONS_00070998-exon-scaffold_58-1491911889:899673..900078TCONS_00070998-exon-scaffold_58-1491911889:899673..900078Clytia hemisphaericaexon
TCONS_00070998-exon-scaffold_58-1491911889:898372..898524TCONS_00070998-exon-scaffold_58-1491911889:898372..898524Clytia hemisphaericaexon
TCONS_00070998-exon-scaffold_58-1491911889:897451..897591TCONS_00070998-exon-scaffold_58-1491911889:897451..897591Clytia hemisphaericaexon
TCONS_00070998-exon-scaffold_58-1491911889:896727..897185TCONS_00070998-exon-scaffold_58-1491911889:896727..897185Clytia hemisphaericaexon
TCONS_00070998-exon-scaffold_58-1491911889:896442..896555TCONS_00070998-exon-scaffold_58-1491911889:896442..896555Clytia hemisphaericaexon
TCONS_00070998-exon-scaffold_58-1491911889:896175..896294TCONS_00070998-exon-scaffold_58-1491911889:896175..896294Clytia hemisphaericaexon
TCONS_00070998-exon-scaffold_58-1491911889:895305..895440TCONS_00070998-exon-scaffold_58-1491911889:895305..895440Clytia hemisphaericaexon
TCONS_00070998-exon-scaffold_58-1491911889:894384..894943TCONS_00070998-exon-scaffold_58-1491911889:894384..894943Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:894384..900078 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.226454	0.294437	0.304628	0.415994	1.32659	1.95067	14.1732	15.9233	3.18359	4.47562	1.96926	3.73528	3.48635	3.34593	3.07145	3.69787	3.50689	5.40472	1.81294	3.61694	6.32878	6.70514	2.02315	3.05588	5.69743	4.90179	21.4975	21.0291	0.377019	0.170721
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070998 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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