TCONS_00065531 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065531
Unique NameTCONS_00065531
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length876

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065531 ID=TCONS_00065531|Name=TCONS_00065531|organism=Clytia hemisphaerica|type=transcript|length=876bp
CTTGGGGAGGCGTGACCCCCTGCCAAAACGCCAATATAGATcgtttagag
agcgtcaactgtattcacgGCAGGAAATGTGTCAAGCAGACCCCTGGCTG
AGGGGTGGCTGAGACTCTTGCCTTATGAAAATTGCAGCCATGATTCTTAA
AATTGGCGTCTCCGAGTGTTCCTTAATTTGTACTAATTTACGTGTGAGTG
CTTAGAACATATCGTTCATATATTCACATGGAAAAGGAGGCTTTGGCCGT
AAGGACAATTTTTTAAAGTCATCCGCAACCATATAGCATAAACCCTAAAA
AAGCGATGAGAATTTGATACTTATCAAGAAGAATTCGAAGAGGctagtgc
gagcgaagcgagcaaataatttgagatattttgttttaaatattgtGTAT
TCACCAAATTGGTGAAtacaagttgaaaaaaattgcaagattttaagatt
tatttcaccaaaatttgtTTTGGAGCGCAATGGCTCATGATCTTCGATAC
CAAGGAGGTGGTCGATACCGATAGTTGAccaaaaataccgaaataccgag
aTAAAAAGGTCTCTTACCGATACCGAGATGGTCTTAAAATACCGATTACC
GATCAATTTGTTCCtctaataccgatttaccgatcTAAAAAAAGGCTAAT
ACCGATGTACCGATATCCCGTACGCCCCCTAAAACATTACGTCTTCCTAA
AATATCAAACAATAGAATTACAAGGACCACAGAACGACCCTTGTAAACGT
GCCTGAATTCTGGCATGAAAATATCATCatcctttttgaaaattgctgta
GAAGAAGAAGGAcatcactttgaaaaaatgttagaTGGTACGAATATATC
TTTATCTTATTTTAGACTATCCCAAT
Run BLAST on NCBI

transcript from alignment at scaffold_44:20165..21040

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065531 ID=TCONS_00065531|Name=TCONS_00065531|organism=Clytia hemisphaerica|type=transcript|length=876bp|location=Sequence derived from alignment at scaffold_44:20165..21040 (Clytia hemisphaerica)
ATTGGGATAGTCTAAAATAAGATAAAGATATATTCGTACCAtctaacatt
ttttcaaagtgatgTCCTTCTTCTTCtacagcaattttcaaaaaggatGA
TGATATTTTCATGCCAGAATTCAGGCACGTTTACAAGGGTCGTTCTGTGG
TCCTTGTAATTCTATTGTTTGATATTTTAGGAAGACGTAATGTTTTAGGG
GGCGTACGGGATATCGGTACATCGGTATTAGCCTTTTTTTAgatcggtaa
atcggtattagaGGAACAAATTGATCGGTAATCGGTATTTTAAGACCATC
TCGGTATCGGTAAGAGACCTTTTTAtctcggtatttcggtatttttggTC
AACTATCGGTATCGACCACCTCCTTGGTATCGAAGATCATGAGCCATTGC
GCTCCAAAacaaattttggtgaaataaatcttaaaatcttgcaatttttt
tcaacttgtaTTCACCAATTTGGTGAATACacaatatttaaaacaaaata
tctcaaattatttgctcgcttcgctcgcactagCCTCTTCGAATTCTTCT
TGATAAGTATCAAATTCTCATCGCTTTTTTAGGGTTTATGCTATATGGTT
GCGGATGACTTTAAAAAATTGTCCTTACGGCCAAAGCCTCCTTTTCCATG
TGAATATATGAACGATATGTTCTAAGCACTCACACGTAAATTAGTACAAA
TTAAGGAACACTCGGAGACGCCAATTTTAAGAATCATGGCTGCAATTTTC
ATAAGGCAAGAGTCTCAGCCACCCCTCAGCCAGGGGTCTGCTTGACACAT
TTCCTGCcgtgaatacagttgacgctctctaaacgATCTATATTGGCGTT
TTGGCAGGGGGTCACGCCTCCCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041062XLOC_041062Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065531-exon-scaffold_44-1491911889:20165..21040TCONS_00065531-exon-scaffold_44-1491911889:20165..21040Clytia hemisphaericaexon
TCONS_00065531-exon-scaffold_44-1510915933:20165..21040TCONS_00065531-exon-scaffold_44-1510915933:20165..21040Clytia hemisphaericaexon
TCONS_00065531-exon-scaffold_44-1575043694:20165..21040TCONS_00065531-exon-scaffold_44-1575043694:20165..21040Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:20165..21040 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.63828	0.484518	0.258	0.895915	1.00422	1.62599	1.23091	1.03419	0.537866	0.255946	0.493653	1.16167	0.521597	1.35873	0.798086	0.699296	1.12899	0.860544	0.837102	1.00584	1.70971	1.33531	0.823225	0.567735	0.742401	0.566189	0.664223	0.533074	0.499687	0.638298
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065531 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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