TCONS_00065439 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065439
Unique NameTCONS_00065439
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length893

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065439 ID=TCONS_00065439|Name=TCONS_00065439|organism=Clytia hemisphaerica|type=transcript|length=893bp
GAAATGTATaaaatttcaaaggaaaatttatgaaaacaaaattccAATCA
ACATGGATCAAGAGTTGAAAAACTTAGAAAGTTCAACTGTGGACCTATCA
AAGGTTTCAGAAGAGTTGAAAATTGATCTGGTTCATTtgggaaaaactgg
aaaaacaaaaattgtgaAATCTGATGATCCCAAAAAGCTAACTCCAGGAA
CAACACTACCATTGGGAATTCCACCAGTCTATCCAGAGTTAAAGGATGTA
ATTGAACAATTACTCTTGTCACCTGGTGATATTCCTATTCATGCATTTCA
ACATTCTCAAAAAGTTTGGGAGCGTGAGAAAGATGTAGAgagtttgtttg
atttgaatttaacaCCAATAGCTACTGAGATTGTTATGGAAAGAGATCCA
AAAACCGGAAAATTGCAAGCTATAAAAGAAggggtatgaAACTACCATCA
CTAGACAAAATGTTGACATTGGAGGATCATGATACTGAAGTTATTGATTT
ATCACCAAaaAGTCTACTTACACAACCTCCAGGGCTTAGCCTTTCCATCA
ATTTTGAGCTGCCAACGTCAAACTCCAGTGAAGCCAAAGAGTCCACCATT
CCAGATGATATGTTTGACACCAAACCAGTCAACATTTCTGACATTTTGAC
CATGGATGTTGATTTGAGTGAACTCTATGTGGATGTTGAGGAACCAGAAG
GTGAGACCTGCTCCAAAGAAAGTCCTGTCGATATGGCATATACTGTCGAA
GAAGATATCCCAGAAAACGTGCTCAAGgttgaAGAGACGAAGGATTGGAA
GAAGCAACATGAAGGTGATAAGAAATGGTCTACTTTGGATCAATCAGATG
TCAGCGATTTTCATAAACAAGTTCCTGATATGGCTTTCAAGGT
Run BLAST on NCBI

transcript from alignment at scaffold_439:502391..505918-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065439 ID=TCONS_00065439|Name=TCONS_00065439|organism=Clytia hemisphaerica|type=transcript|length=3528bp|location=Sequence derived from alignment at scaffold_439:502391..505918- (Clytia hemisphaerica)
GAAATGTATAAAATTTCAAAGGAAAATTTATGAAAACAAAATTCCAATCA
ACATGGATCAAGAGTTGAAAAACTTAGAAAGTTCAACTGTGGACCTATCA
AAGGTTTCAGAAGAGTTGAAAATTGATCTGGTTCATTTGGGAAAAACTGG
AAAAACAAAAATTGTGAAATCTGATGATCCCAAAAAGCTAACTCCAGGAA
CAACAGTAAGTATTGAAAATCAGTCTCACTGATTTCTTAAAAAACATTAG
ATTATTTCTGTAACTGAACTCGAGAATTATTCTGCCATAAAACTTGAATT
TATATTGAAATTCATAACAAACTTTTGAAAAATATCTGAGTAAAATATGG
TGAAATAAAGAACTAGCTTAGATACAATCTTAAACAAGCTGCATTGCCTG
AAGAGAGCATCATTGTGAAACAAGCAATTATATAAGTTAGTTCTTTATTG
TCGATAGTGCTACAATATATATTATAGAAAATCTAAAAAATTTTAAATAT
ATTTTCATTTAGCTACCATTGGGAATTCCACCAGTCTATCCAGAGTTAAA
GGATGTAATTGAACAATTACTCTTGTCACCTGGTGATATTCCTATTCATG
CATTTCAACATTCTCAAAAGTAAATGACTTCATACTGTTATTAATTATAG
GTACATGTTCTGGGACATGTGACTTGTGCCTTGTCTATTCCAAAGGTTGT
GTTATGCATTTAACTTGAACTGAGTAAAGTCTCTCACACATACTTTAAAT
GTTCGAGATCGAATATTAATTAATCTAAGGTGCTGTGGCTCATAATACTG
CTTACAATGGATTTACGATTCATTGCCTAGGAGAAAGACCAAAACAACGT
CTAGTCTGTCCATATCTTCTGACGACTGGACGACAGATGAAGATTAGACA
ATATTTTATAAATTTAAAATTATTTCGTAGAGGTCGATAGACATGTGAAA
TATAATTCTACGAATAAATAAATTACTTTGCTTTTTTAGAGTTTGGGAGC
GTGAGAAAGATGTAGAGAGTTTGTTTGATTTGAATTTAACACCAATAGCT
ACTGAGATTGTTATGGAAAGAGATCCAAAAACCGGAAAATTGCAAGCTAT
AAAAGAAGTAAGCCAATATCTACATTTCCTTATTTAACAGGTCCTGTTGA
GTTTATTGTTCTCAAATATACTTTGAATAATTTAAGCTTTAGAATATCAT
CCTTACCATTACTTCAAGCTGTTAATGATCAATGTCATAAAAGAGGGTGG
GCTTGGCAACAAACCGGCAATATTGCTCAAATTATTTACCTTTCCTCACT
TGCAACCAATTGTTTTAAAAGCTACACTCTTAAAATCAATTAGCTTGCTG
TGCTATTTTTTTATGTTANAAATCATCAAAAACAGCGTAGTAGAATCTTT
TTACTCTATTTTGTATTCAGTTTAGGTAGATTTATTCCAGTAATTTAGCT
TCTCCATCCAAAGTAAGGCTCAACAAAATAATTAAAAAACCAAGAGAACT
TTTTATCTTGATTTTGATAACTTTGATAACGTCAATTTCTTTCTTTTTTT
TCCAGGGGGTATGAAACTACCATCACTAGACAAAATGTTGACATTGGAGG
ATCATGATACTGAAGTTATTGATTTATCACCAAGTATGTTGTTATTTCTA
TTGAAGTATTTTCTTGACTTATTCCTAAGTTAAGATTTAGTTGGCTTTCC
TATCAGAGACCTGAAAATCTAAAACTGACCTTCTATTTTCAATTTAATGT
AGCTGAATATTTTCAGTGGAATATTTTCAACCAAATATGTTTTCTATGAT
GATTCCAAACCACTTCTTCAATTTTCATTTCAGAAAGTCTACTTACACAA
CCTCCAGGGCTTAGCCTTTCCGTCAATTTTGAGCTGCCAACGTCAAACTC
CAGTGAAGCTAAAGGTATTTTTGAAAAGGTTTTTCATTGGAACAATTAAT
TTACTTTAAATAATCCAGGGTAGCTAAAAAATTCAGTTTTTATCATAATG
AAGAGCTGTTACGAATTATGCTTCAATTTACTTTCAAGACGTGNTTTTAA
AAAACTGACTTTTTTTCCATGTCAAAATTTCAAAAAATCATCAAAAACAG
CGTAGTAGAATCTTTTTACTCTATTTTGTATTCAGTTTAGGTAGATTTAT
TCCAGTAATTTAGCTTCTCCATCCAAAGTAAGGCTCAACAAAATAATTAA
AAAACCAAGAGAACTTTTTATCTTGATTTTGATAACTTTGATAACGTCAA
TTTCTTTCTTTTTTTTCCAGGGGGTATGAAACTACCATCACTAGACAAAA
TGTTGACATTGGAGGATCATGATACTGAAGTTATTGATTTATCACCAAGT
ATGTTGTTATTTCTATTGAAGTATTTTCTTGACTTATTCCTAAGTTAAGA
TTTAGTTGGCTTTCCTATCAGAGACCTGAAAATCTAAAACTGACCTTCTA
TTTTCAATTTAATGTAGCTGAATATTTTCAGTGGAATATTTTCAACCAAA
TATGTTTTCTATGATGATTCCAAACCACTTCTTCAATTTTCATTTCAGAA
ATTCTACTTACACAACCTCCAGGGCTTAGCCTTTCCATCAATTTTGAGCT
GCCAACGTCAAACTCCAGTGAAGCCAAAGGTATTTTCATTGGAACAATTA
ATTTACTTTAAATAATCCAGGGTAGCTAAAAAATTCAGTTTTTATCATAA
TGAAGAGCTGTTACGAATTATGCTTCAATTTACTTTCAAGACGTGTCTGT
TTTACCATTAAAAGATGCACTTTTACCAATCTAAATTATAAATCAAACTT
TTTCCAAACGAGCGAAAGCACCTAAATTTCATTACAATTACTTCATTTGC
GCCAGTTAGGAGTACAATGTCATTATCACTTATCTCATAAAAAGTATACC
TTCCGTTTCAATTTAGAGTCCACCATTCCAGATGATATGTTTGACACCAA
ACCAGTCAACATTTCTGACATTTTGACCATGGATGTTGATTTGAGTGAAC
TCTATGTGGATGTTGAGGAACCAGAAGGTGAGACCTGCTCCAAAGAAAGT
CCTGTCGATATGGCATATACTGTCGAAGAAGATATCCCAGAAAACGTGCT
CAAGGTAAGGAAAGTGTTACTGTTATGGTTGTCCCCAACAATTTTGAATA
CAGTGATTTAAGAAGTGATTGATATCATTGTTCTTCATAGTACTGTTAAC
CTGATAGGAAAGTTTCTGTCAATTTTTTATAAAGGAACCGGTAATTTTTG
GCTCAGCCTGAGATTGTTCTTAACTTTCTATTATCCCAAACAATAGAGCT
ATTGTTCTGAGTGCCTAAATCTTAGGCTGGTGTTCTTATAAAATTGTTTT
TATAAAAAAAAGTGTGTATTATTTATCTTTGAAGATGTCATTCTATATTT
GTATTTTTAAAGGTTGAAGAGACGAAGGATTGGAAGAAGCAACATGAAGG
TGATAAGAAATGGTCTACTTTGGATCAATCAGATGTCAGCGATTTTCATA
AACAAGTTCCTGATATGGCTTTCAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041009XLOC_041009Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065439-exon-scaffold_439-1575043694:505714..505918TCONS_00065439-exon-scaffold_439-1575043694:505714..505918Clytia hemisphaericaexon
TCONS_00065439-exon-scaffold_439-1575043694:505300..505406TCONS_00065439-exon-scaffold_439-1575043694:505300..505406Clytia hemisphaericaexon
TCONS_00065439-exon-scaffold_439-1575043694:504812..504929TCONS_00065439-exon-scaffold_439-1575043694:504812..504929Clytia hemisphaericaexon
TCONS_00065439-exon-scaffold_439-1575043694:504286..504363TCONS_00065439-exon-scaffold_439-1575043694:504286..504363Clytia hemisphaericaexon
TCONS_00065439-exon-scaffold_439-1575043694:504068..504085TCONS_00065439-exon-scaffold_439-1575043694:504068..504085Clytia hemisphaericaexon
TCONS_00065439-exon-scaffold_439-1575043694:503290..503352TCONS_00065439-exon-scaffold_439-1575043694:503290..503352Clytia hemisphaericaexon
TCONS_00065439-exon-scaffold_439-1575043694:502815..503002TCONS_00065439-exon-scaffold_439-1575043694:502815..503002Clytia hemisphaericaexon
TCONS_00065439-exon-scaffold_439-1575043694:502391..502506TCONS_00065439-exon-scaffold_439-1575043694:502391..502506Clytia hemisphaericaexon
TCONS_00065439-exon-scaffold_439-1510915933:505714..505918TCONS_00065439-exon-scaffold_439-1510915933:505714..505918Clytia hemisphaericaexon
TCONS_00065439-exon-scaffold_439-1510915933:505300..505406TCONS_00065439-exon-scaffold_439-1510915933:505300..505406Clytia hemisphaericaexon
TCONS_00065439-exon-scaffold_439-1510915933:504812..504929TCONS_00065439-exon-scaffold_439-1510915933:504812..504929Clytia hemisphaericaexon
TCONS_00065439-exon-scaffold_439-1510915933:504286..504363TCONS_00065439-exon-scaffold_439-1510915933:504286..504363Clytia hemisphaericaexon
TCONS_00065439-exon-scaffold_439-1510915933:504068..504085TCONS_00065439-exon-scaffold_439-1510915933:504068..504085Clytia hemisphaericaexon
TCONS_00065439-exon-scaffold_439-1510915933:503290..503352TCONS_00065439-exon-scaffold_439-1510915933:503290..503352Clytia hemisphaericaexon
TCONS_00065439-exon-scaffold_439-1510915933:502815..503002TCONS_00065439-exon-scaffold_439-1510915933:502815..503002Clytia hemisphaericaexon
TCONS_00065439-exon-scaffold_439-1510915933:502391..502506TCONS_00065439-exon-scaffold_439-1510915933:502391..502506Clytia hemisphaericaexon
TCONS_00065439-exon-scaffold_439-1491911889:505714..505918TCONS_00065439-exon-scaffold_439-1491911889:505714..505918Clytia hemisphaericaexon
TCONS_00065439-exon-scaffold_439-1491911889:505300..505406TCONS_00065439-exon-scaffold_439-1491911889:505300..505406Clytia hemisphaericaexon
TCONS_00065439-exon-scaffold_439-1491911889:504812..504929TCONS_00065439-exon-scaffold_439-1491911889:504812..504929Clytia hemisphaericaexon
TCONS_00065439-exon-scaffold_439-1491911889:504286..504363TCONS_00065439-exon-scaffold_439-1491911889:504286..504363Clytia hemisphaericaexon
TCONS_00065439-exon-scaffold_439-1491911889:504068..504085TCONS_00065439-exon-scaffold_439-1491911889:504068..504085Clytia hemisphaericaexon
TCONS_00065439-exon-scaffold_439-1491911889:503290..503352TCONS_00065439-exon-scaffold_439-1491911889:503290..503352Clytia hemisphaericaexon
TCONS_00065439-exon-scaffold_439-1491911889:502815..503002TCONS_00065439-exon-scaffold_439-1491911889:502815..503002Clytia hemisphaericaexon
TCONS_00065439-exon-scaffold_439-1491911889:502391..502506TCONS_00065439-exon-scaffold_439-1491911889:502391..502506Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:502391..505918 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.66349	3.74003	2.93207	4.20093	3.19751	1.68448	4.57501	2.77115	2.95992	3.79397	3.21287	1.67432	3.29887	2.43587	2.05798	4.44747	4.95312	5.6776	2.80787	3.15952	1.15179	4.17313	5.08249	5.78959	3.65023	4.43704	2.0973	2.3577	2.30296	3.1238
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065439 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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