TCONS_00070330 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070330
Unique NameTCONS_00070330
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070330 ID=TCONS_00070330|Name=TCONS_00070330|organism=Clytia hemisphaerica|type=transcript|length=343bp
TGTGATTCGATTTCAAGCTCTCAAATTCATTGTCCATAGCTTGTTTCCAT
TGCTTGGCTTCTGGACAGGACAGGGCTTCTTTGAAGGATGCAGGTGTGTT
AACGTGGTAACAATAATGCACGAATTTGGCAGCGTCAATTTCATCAGGTT
CATTCTTTGGTTCATCTGGGATTGACGGTTGTTGACGTGATCTGAGAGGA
TACGATTTCCATGGTTCAGATTTAGCGGTGACGGTCATAGGCTTATCGTC
AGATGGATCTGGTTTGACGGTCGGTTCATCAGCAACTGGTAAGGTATCGT
CAGCAACTGGTATTTGGTTGACTGTGGGTAGAAATTTTACGAG
Run BLAST on NCBI

protein sequence of TCONS_00070330-protein

>TCONS_00070330-protein ID=TCONS_00070330-protein|Name=TCONS_00070330-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
LVKFLPTVNQIPVADDTLPVADEPTVKPDPSDDKPMTVTAKSEPWKSYPL
RSRQQPSIPDEPKNEPDEIDAAKFVHYCYHVNTPASFKEALSCPEAKQWK
QAMDNEFESLKSNH
Run BLAST on NCBI

transcript from alignment at scaffold_53:29151..29493

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070330 ID=TCONS_00070330|Name=TCONS_00070330|organism=Clytia hemisphaerica|type=transcript|length=343bp|location=Sequence derived from alignment at scaffold_53:29151..29493 (Clytia hemisphaerica)
CTCGTAAAATTTCTACCCACAGTCAACCAAATACCAGTTGCTGACGATAC
CTTACCAGTTGCTGATGAACCGACCGTCAAACCAGATCCATCTGACGATA
AGCCTATGACCGTCACCGCTAAATCTGAACCATGGAAATCGTATCCTCTC
AGATCACGTCAACAACCGTCAATCCCAGATGAACCAAAGAATGAACCTGA
TGAAATTGACGCTGCCAAATTCGTGCATTATTGTTACCACGTTAACACAC
CTGCATCCTTCAAAGAAGCCCTGTCCTGTCCAGAAGCCAAGCAATGGAAA
CAAGCTATGGACAATGAATTTGAGAGCTTGAAATCGAATCACA

Coding sequence (CDS) from alignment at scaffold_53:29151..29493

>TCONS_00070330 ID=TCONS_00070330|Name=TCONS_00070330|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at scaffold_53:29151..29493 (Clytia hemisphaerica)
CTCGTAAAATTTCTACCCACAGTCAACCAAATACCAGTTGCTGACGATAC
CTTACCAGTTGCTGATGAACCGACCGTCAAACCAGATCCATCTGACGATA
AGCCTATGACCGTCACCGCTAAATCTGAACCATGGAAATCGTATCCTCTC
AGATCACGTCAACAACCGTCAATCCCAGATGAACCAAAGAATGAACCTGA
TGAAATTGACGCTGCCAAATTCGTGCATTATTGTTACCACGTTAACACAC
CTGCATCCTTCAAAGAAGCCCTGTCCTGTCCAGAAGCCAAGCAATGGAAA
CAAGCTATGGACAATGAATTTGAGAGCTTGAAATCGAATCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043804XLOC_043804Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070330-exon-scaffold_53-1491911889:29151..29493TCONS_00070330-exon-scaffold_53-1491911889:29151..29493Clytia hemisphaericaexon
TCONS_00070330-exon-scaffold_53-1510915933:29151..29493TCONS_00070330-exon-scaffold_53-1510915933:29151..29493Clytia hemisphaericaexon
TCONS_00070330-exon-scaffold_53-1575043694:29151..29493TCONS_00070330-exon-scaffold_53-1575043694:29151..29493Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070330-proteinTCONS_00070330-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_53supercontigscaffold_53:29151..29493 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.282139	0	0	0	0.276353	0	0	0.176082	0	0	0.161336	0.198753	0	0	0	0	0	0	0.275986	2.55833	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070330 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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