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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065352 ID=TCONS_00065352|Name=TCONS_00065352|organism=Clytia hemisphaerica|type=transcript|length=1895bp
tagtggtcagagaggaataatccttttttaatcagtgattcaagctttca
tattattcccgtctctaaagaagggtgtcgtaATTAGActagggatgtcg
atattagaccaacttacggtatactATGTTTTAGTAGACTGATCACCAGC
TTAAACATTGCTGAATGACTTgtcattttaatttaacttttcattatcat
ttagaaaaaaatgtcttcctcagaaaatgaaagtgactggTCGGATGTag
aggaagaagaaaaggatagTGAACATCTCAAAGCACTGTGTTTATTTTCA
GAAGCTCAATTTCAATCTATTGAGGATTGTTTTGGTCATATGAAggataa
atatgattttgatttgaaagcttttatccgaaaacttaaaattgatttct
aCAATTATgttaaatttatcaattatGTTCGAAAAGAGAAGCCTGACCCA
TCAGAGGTGAAGAAAATGGTTTCCACGTCTTTATTTGAAAAAGATTGTTA
TTTGCAGCCAGTTGTTGTCGATGATTTACTACTTCAGTTTGATGTAGATG
AATTACATGAAAACAATGTAGAGATATCTACAAATGGCTTTCATTTGGAA
GACAAATTAGCAGTAAGTGAAAGAAGAGCTCAACTGGCTGAAGAATCTTT
AGAAAGAACCATTTTGGATCTTGAGAAATGTCGCAAAGAGTTGAAGAAGC
AGTTGTTGGGTGCTGCAGAAGAAATGGTGACACATTACAATGAAACCAAT
GAAGGATACTTTGCATCTTATGCTCATCATGGAATCCATGAAGAAATGTT
GAAGGATAAAGTACGCACTGAATCTTAtcgtgatttcattgtaaagaACC
CCAAAGTTTTTAAAGATGCAATAGTGCTCGATGTTGGCTGTGGTACATCG
ATTTTATCAATGCTTGCTGCGAAAAGTGGTGCTAAGAAAGTCATTGGTGT
TGATAATTCTGATGTAGCTCATCAAGCAATGGACATTGTCGGGGAAAACA
AATTAGATGATATAATAACAATAATGAAAGGAAAAGCAGAGGATATAAAT
ATGCCCTCTAAAGTTGATGTTATTATTTCTGAATGGATGggttatttttt
attgttcgaaAGTATGCTTGATACAGTTTTATTTTGCAGAGACAACTTAT
TGAATCCTAATGGACGCATTTACCCTGATAAATGCAACATTCAGTTGTCA
GCTATGGCTGATGATGAATATTATGAAAGTAAAGTTAAATTTTGGCAGAA
TGTCTATGGGTTCAAAATGTCTACAATGATGACAAGCTCTATTGAAGAGC
CTTTGATGGAGATagtaaataaagagaaaattatATCGAAACCAGCTGTA
ATCAAGGAATTTGATTTAATGAAGATTTCAGTCAAAGACCTCGACTTtga
tgcattttttgaaattgagatTACCAAGAGTGGAATTGTATCATCTATAA
TTGgttattttgatatattttttggGGATAATTCTTTTGAGACTCCAGTT
ATGTTTGGTACCGGTCCTCATGATACGCCCACTCATTGGAAACAGACAGT
TTTCTTCCTGAAAGAACCTATTCCGTGTGAATCAGGAGAAAAGTTAAAAG
GAcgtattttttgtaagaaaaacaagaaagatACAAGAGGACTTGACGTT
GCTCTTatctttttcaagaaaaatagcGATAGTGATATTTTATTGAGACA
ACACTATGTAATTGCTTGATAATCTTCATAATAAGTACAATTGTCATAAA
gataaaattattcttttttatttaaaatatacCCTTACCTTTTGAAACAG
CTTTTAGAAGGgaattatttttgttaaaatcctACCTactaaagaaattg
aaaaaaaaaactatcgAAAGTCTGTTAAAGCTCTGTCACCATGAA Run BLAST on NCBI transcript from alignment at scaffold_439:253431..255325+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065352 ID=TCONS_00065352|Name=TCONS_00065352|organism=Clytia hemisphaerica|type=transcript|length=1895bp|location=Sequence derived from alignment at scaffold_439:253431..255325+ (Clytia hemisphaerica)
tagtggtcagagaggaataatccttttttaatcagtgattcaagctttca
tattattcccgtctctaaagaagggtgtcgtaATTAGActagggatgtcg
atattagaccaacttacggtatactATGTTTTAGTAGACTGATCACCAGC
TTAAACATTGCTGAATGACTTgtcattttaatttaacttttcattatcat
ttagaaaaaaatgtcttcctcagaaaatgaaagtgactggTCGGATGTag
aggaagaagaaaaggatagTGAACATCTCAAAGCACTGTGTTTATTTTCA
GAAGCTCAATTTCAATCTATTGAGGATTGTTTTGGTCATATGAAggataa
atatgattttgatttgaaagcttttatccgaaaacttaaaattgatttct
aCAATTATgttaaatttatcaattatGTTCGAAAAGAGAAGCCTGACCCA
TCAGAGGTGAAGAAAATGGTTTCCACGTCTTTATTTGAAAAAGATTGTTA
TTTGCAGCCAGTTGTTGTCGATGATTTACTACTTCAGTTTGATGTAGATG
AATTACATGAAAACAATGTAGAGATATCTACAAATGGCTTTCATTTGGAA
GACAAATTAGCAGTAAGTGAAAGAAGAGCTCAACTGGCTGAAGAATCTTT
AGAAAGAACCATTTTGGATCTTGAGAAATGTCGCAAAGAGTTGAAGAAGC
AGTTGTTGGGTGCTGCAGAAGAAATGGTGACACATTACAATGAAACCAAT
GAAGGATACTTTGCATCTTATGCTCATCATGGAATCCATGAAGAAATGTT
GAAGGATAAAGTACGCACTGAATCTTAtcgtgatttcattgtaaagaACC
CCAAAGTTTTTAAAGATGCAATAGTGCTCGATGTTGGCTGTGGTACATCG
ATTTTATCAATGCTTGCTGCGAAAAGTGGTGCTAAGAAAGTCATTGGTGT
TGATAATTCTGATGTAGCTCATCAAGCAATGGACATTGTCGGGGAAAACA
AATTAGATGATATAATAACAATAATGAAAGGAAAAGCAGAGGATATAAAT
ATGCCCTCTAAAGTTGATGTTATTATTTCTGAATGGATGggttatttttt
attgttcgaaAGTATGCTTGATACAGTTTTATTTTGCAGAGACAACTTAT
TGAATCCTAATGGACGCATTTACCCTGATAAATGCAACATTCAGTTGTCA
GCTATGGCTGATGATGAATATTATGAAAGTAAAGTTAAATTTTGGCAGAA
TGTCTATGGGTTCAAAATGTCTACAATGATGACAAGCTCTATTGAAGAGC
CTTTGATGGAGATagtaaataaagagaaaattatATCGAAACCAGCTGTA
ATCAAGGAATTTGATTTAATGAAGATTTCAGTCAAAGACCTCGACTTtga
tgcattttttgaaattgagatTACCAAGAGTGGAATTGTATCATCTATAA
TTGgttattttgatatattttttggGGATAATTCTTTTGAGACTCCAGTT
ATGTTTGGTACCGGTCCTCATGATACGCCCACTCATTGGAAACAGACAGT
TTTCTTCCTGAAAGAACCTATTCCGTGTGAATCAGGAGAAAAGTTAAAAG
GAcgtattttttgtaagaaaaacaagaaagatACAAGAGGACTTGACGTT
GCTCTTatctttttcaagaaaaatagcGATAGTGATATTTTATTGAGACA
ACACTATGTAATTGCTTGATAATCTTCATAATAAGTACAATTGTCATAAA
gataaaattattcttttttatttaaaatatacCCTTACCTTTTGAAACAG
CTTTTAGAAGGgaattatttttgttaaaatcctACCTactaaagaaattg
aaaaaaaaaactatcgAAAGTCTGTTAAAGCTCTGTCACCATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065352-exon-scaffold_439-1491911889:253431..255325 | TCONS_00065352-exon-scaffold_439-1491911889:253431..255325 | Clytia hemisphaerica | exon |
| TCONS_00065352-exon-scaffold_439-1510915933:253431..255325 | TCONS_00065352-exon-scaffold_439-1510915933:253431..255325 | Clytia hemisphaerica | exon |
| TCONS_00065352-exon-scaffold_439-1575043694:253431..255325 | TCONS_00065352-exon-scaffold_439-1575043694:253431..255325 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_439 | supercontig | scaffold_439:253431..255325 + |
Blast
BLAST of TCONS_00065352 vs. Swiss-Prot (Human)
Match: ANM3 (Protein arginine N-methyltransferase 3 OS=Homo sapiens GN=PRMT3 PE=1 SV=3) HSP 1 Score: 393.275 bits (1009), Expect = 1.195e-128 Identity = 223/504 (44.25%), Postives = 327/504 (64.88%), Query Frame = 1
Query: 208 KMSSSENESDWSDVEEEEKDSEHLK--ALCLFSEAQFQSIEDCFGHMKDKYDFDLKAFIRKLKIDFYNYVKFINYVRKEKPDPSEVKKMVSTSLFEKDCYLQPXXXXXXXXXXXXXXXHEN-NVEIS-TNGFHLEDKLAVSERRAQLAEESLERTIL------DLEKCRKELKKQLL-------GAAEEMVTHYNETNEG-YFASYAHHGIHEEMLKDKVRTESYRDFIVKNPKVFKDAIVLDVGCGTSILSMLAAKSGAKKVIGVDNSDVAHQAMDIVGENKLDDIITIMKGKAEDINMP-SKVDVIISEWMGYFLLFESMLDTVLFCRDNLLNPNGRIYPDKCNIQLSAMADDEYYESKVKFWQNVYGFKMSTMMTSSIEEPLMEIVNKEKIISKPAVIKEFDLMKISVKDLDFDAFFEIEITKSGIVSSIIGYFDIFFGDNSFETPVMFGTGPHDTPTHWKQTVFFLKEPIPCESGEKLKGRIFCKKNKKDTRGLDVALIF 1662
++S S +E+ W D E++ D H K CLF F S E+ F H K ++ F++ + + K ++FY Y+K IN++R + P + + + +EK+ YL+PV+ DDLLLQFDV++L+E +V S NG L + +V E+ + +L DL+K ++ + ++ ++ ++ E +G YF+SY H+GIHEEMLKDK+RTESYRDFI +NP +FKD +VLDVGCGT ILSM AAK+GAKKV+GVD S++ +QAMDI+ NKL+D IT++KGK E++++P KVDVIISEWMGYFLLFESMLD+VL+ ++ L G +YPD C I L A++D + ++ FW +VYGFKMS M + I E ++E+++ + +IS+P IK D S+ DL+F + F ++IT++ + ++I GYFDI+F N V+F TGP T THWKQTVF L++P ++GE LKG++ K+KKD R L V L
Sbjct: 23 ELSDSGDEAAWED--EDDADLPHGKQQTPCLFCNRLFTSAEETFSHCKSEHQFNIDSMVHKHGLEFYGYIKLINFIRLKNPTVEYMNSIYNPVPWEKEEYLKPVLEDDLLLQFDVEDLYEPVSVPFSYPNG--LSENTSVVEKLKHMEARALSAEAALARAREDLQKMKQFAQDFVMHTDVRTCSSSTSVIADLQEDEDGVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEKNC-HNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKSKKDPRSLTVTLTL 521
The following BLAST results are available for this feature:
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