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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006493 ID=TCONS_00006493|Name=TCONS_00006493|organism=Clytia hemisphaerica|type=transcript|length=3721bp
atagcttcagaaataataaagaaaaatgaaaattacttATCTATAGAAAA
TAATCAGAATTTGAATTCCAAGATGAGGGACGAGGTTCTTGGCGTCGATA
TCGGAACCACTCACACCAAGTGTTGTTTGTTTACTGATGGAGAATTCAAA
TATGAATCGTCTCTCCATAATGGCTACCAAGAGGCTGGTGAGCTTTCAAT
GTATACCCACAAAGAACAAAATATCGGAGCATTAGTTCGCTCCTTAGATG
ATTGTTTGTCAAAGTTCGGAAATAATTTGAAAGTGTCTCGCTTTGTTGTA
ACGGGGCAAATGCACGGTATTGTATTATGGAAACCAAAAATTATGGAGAT
AATAAATCATGAGACTTTTACCTCTCTGATGAATGGATGTgtcaaaaaac
attcgaatttgatCACGTGGGAAGATCAAAGATGCGAtgaagaatttttg
aaatctttcccTAAAAGTCGTTGTGGTAATGATGTTTCGACGGGGTATGG
ATTGGCTTCGTTGTTATGGTTACAGGAAGCAGGCAAATTGGAAGATTACA
CAATGTTTGGTACCATTATGGATTTTATAGTTTGGTTGTTAACTCAGACT
GAACGTGTTTATATGACACCACACAATGCAAAAAGTTGGGGATATTTTGA
TGAAGAATTGATGGCGTGGGAAAGCGAAATTTTTTCAGGAAAGATCGATC
CATCTCTATTACCCACAATTCTTCCTGTTCAACAACCTATTGGCATGGCA
ACGGTTTCATGTCATGGAATCACCAAAAATCACACAGTTGTTTATGGAGC
TTTGGGGGATATGCAATGCGCCGTCCGCTCTTGTCGACCGAAGGGAAATG
AGGCTGTTTTGAACATTGGCACGTCAGCTCAGCTTTCCATCATTGTGGAC
AAACGTTCAATGGTTCACCAAACAATCTCACAAAATCATTCTGAATTACA
AATCGTTCCTTATGATCAGGAAAACGTCATTGTAACTGCTGCTTCGCTGA
ATGgagGGAATGTTTTGCATCAATTAGCCACCTCTCTCGTTTCATGGATG
ACCGACCTCGAATGTCAGAACGTACCCTCATCCAGCGAAGTCTTAATAAA
ATTCAACCAATTACAAACAGATGCTGGTACATCCCTCCTGGAAATTTCAC
CCACAATTTTTGGCGAGCGGCACGACCCGAAACTTTCAGCATCGGTGCGA
AACATTCGACCCGATAACCTTTCCCTCGGAAACATTGTTGCAGGAATGAG
CCGAGGAATAATTGAGAACATGTTTCGAATGATGTCGGTAGACTTTCTTC
GGAAACACGACGTGCAAAGGATTGTGGGTACTGGTGGAGCACTAAGAGCG
AGTGAAACGTTGAGAGGATATGTTGTTGAGATTTCAGGGTTGGAGTTGAG
GATGGCCGAACAAACTGATGCTTCACTTGGTTCGATGCTTTTCGTTCAAG
AGGATTGAATATAGTTGATCAAGTTGCAAAAATTATCCAATTCTAATTGA
TAGAGATTAGAGGGGCAGCAATTTGTTGAGTTTCAGACCACAAGTTTTTA
TTATTTAATAAGACATTGGTGGGCCGTGCGCCCAATTTCACACCATgtgg
aaaattttagaaatgaaGTTACGCTTTGGGAACGAGTTTTTGATGTGGGT
GTGTGAGAATAAAATGGTAGCATTTTTCGAATTTGACCTCGGCTCATTTG
AAGTTAGTTAAGTTTCACAAAAAAAGTCAActgtaatattttttctaaat
tgctTTTCCGGTTTTCCTGGCAAAAGACGACACGAAAACAATGGTGAAAC
GAAACATCGAGAGACGTAGACAATGCTATCGTTCGTGTTATATATCATTA
TGATATTACGATATAACAtagttgtatattataaaacgtaatatgttacG
TGGCGGAAAATAGAGCCCCTCCGATTATTTTTCGCTCACGCGGACAAAAT
TTCCGCCCGATTGCTAATTTGCGTGTTTGaggttattctttatttttcga
taGCATAGTCTACGAGAGATGTTAACGCCGGAAAGCACAAATAGACAAGA
TAATGAAATCAAATGACGTACAAAATGAGGATTCATTATACGTTGTagta
atatttctaaattttttgctGGCTCTCGGATAATTGCACGAAAAAATTCT
CCGTACTCGGTTTGTACTTCCGTAGTTCGGGAAGAGACTGAGTTTAGTCC
GTGAGGAATTGGGGTCCATCTAGCCTTCGTggccacagatatctgtaaag
cccgaagggctatataggcaactttaagctttctccagcaaaaaaaagtg
aagcaaaaatttgactttttaaatttcgcgccgatggataggatctagca
ttttaattgttttcggagcgtNNcatattttagtcacgtgactttggtag
gaaatccttccaaacctaggcttcacttttcgataaaagccgcaaatcta
gcccttcgggctttacagatctgtgttCGTGGCCCCTTTTCAGCACTTAT
CCGTTAGTTAGCCTGATTCGTCAACCTTGACATGACAAagatagtaagta
agtaagtctgcgaccgcagtcggaggtgacccgaaggctcctctttcgat
agctgtctacccgaaggtaggggagggcgccactctttctccctggattg
ctccacttacccttgatccttctcttaattgctgagcatctaGCAGAgat
atcaagtaccattttgggaatctttggtatgacccggctgagggttgaac
ccacaaccttgcgcaccgtagccggatgctctaccactgcactacggtcg
ctttgACAAAGATAAGTACGTTTCACAATGTTGCAATCAGGTTGAAACCT
AGGTTAGggccagggcaaaccagtccaacatttcatccaacgtgattttc
caatgttggatgaaatgttggatggaaaaacttgcgttggatgaagcaaa
aatcaaggccggggcaaaccgatccaacatttcatccggcatgacttgaa
aaaaaatgaaaattcaaaaaaataaagaaaaaagtaccaccaaaccaatc
caacacggaaaattacacaattcaatgagagagcttctttgatctcgccg
caaatgttggatgaaatgtttgatggcgatcaaacttcatccaacaccgt
ccaacacgatttttttcttctttttttgaattttcatctttttccaaaaa
tttgaattgacgcAAACCGGTCCAAgatttcatccaacatcagaaaaaaa
ggcatgttggatcggtttgccctgGCCTTTAGGAAGTACGAATATTGTAC
ACTGTTCATGCCAGCTATAATCAAATGCTCGGAGAAAAATAATTGTGTAT
TTTCTTGTGTAGATTTCCCAGTTTGGTGTTAAGTATGAGTGGAAGATAGG
AAGGAAAGCTTGAGAAGAATTATTGACATAATATCtactttgtattttat
tttgaaaaatattgcctGATCTATTTACATTTTTGTAAAGCTCCTAATTT
TTGTCTTTatcaataaacaataaaaagaaaGCACTGCTCCCTTTGAAATA
TCCTAAGTCATAAAATCTACTTTCctacaattttgaaataagttGCTAAG
GTAGGCTTCTAACTTTCCaaaagttggctagttttttgggacaatatttt
tcttttgcagAGCCTGGTTGACTTAAAAGTCCCATCTTTGCTTATTATGT
TTGCTACGAAGTTTTACTTAA Run BLAST on NCBI protein sequence of TCONS_00006493-protein >TCONS_00006493-protein ID=TCONS_00006493-protein|Name=TCONS_00006493-protein|organism=Clytia hemisphaerica|type=polypeptide|length=485bp
IASEIIKKNENYLSIENNQNLNSKMRDEVLGVDIGTTHTKCCLFTDGEFK
YESSLHNGYQEAGELSMYTHKEQNIGALVRSLDDCLSKFGNNLKVSRFVV
TGQMHGIVLWKPKIMEIINHETFTSLMNGCVKKHSNLITWEDQRCDEEFL
KSFPKSRCGNDVSTGYGLASLLWLQEAGKLEDYTMFGTIMDFIVWLLTQT
ERVYMTPHNAKSWGYFDEELMAWESEIFSGKIDPSLLPTILPVQQPIGMA
TVSCHGITKNHTVVYGALGDMQCAVRSCRPKGNEAVLNIGTSAQLSIIVD
KRSMVHQTISQNHSELQIVPYDQENVIVTAASLNGGNVLHQLATSLVSWM
TDLECQNVPSSSEVLIKFNQLQTDAGTSLLEISPTIFGERHDPKLSASVR
NIRPDNLSLGNIVAGMSRGIIENMFRMMSVDFLRKHDVQRIVGTGGALRA
SETLRGYVVEISGLELRMAEQTDASLGSMLFVQED Run BLAST on NCBI transcript from alignment at sc0000067:324230..328981- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006493 ID=TCONS_00006493|Name=TCONS_00006493|organism=Clytia hemisphaerica|type=transcript|length=4752bp|location=Sequence derived from alignment at sc0000067:324230..328981- (Clytia hemisphaerica)
ATAGCTTCAGAAATAATAAAGAAAAATGAAAATTACTTATCTATAGAAAA
TAATCAGAATTTGAATTCCAAGATGAGGGACGAGGTTCTTGGCGTCGATA
TCGGAACCACTCACACCAAGTGTTGTTTGTTTACTGATGGAGAATTCAAA
TATGAATCGTCTCTCCATAATGGCTACCAAGAGGCTGGTGAGCTTTCAAT
GTATACCCACAAAGAACAAAATATCGGAGCATTAGTTCGCTCCTTAGATG
ATTGTTTGTCAAAGTTCGGAAATAATTTGAAAGTGTCTCGCTTTGTTGTA
ACGGGGCAAATGCACGGTATTGTATTATGGAAACCAAAAATTATGGAGAT
AATAAATCATGAGACTTTTACCTCTCTGATGAATGGATGTGTCAAAAAAC
ATTCGAATTTGATCACGTGGGAAGATCAAAGATGCGATGAAGAATTTTTG
AAATCTTTCCCTAAAAGTCGTTGTGGTAATGATGTTTCGACGGGGTATGG
ATTGGCTTCGTTGTTATGGTTACAGGAAGCAGGCAAATTGGAAGATTACA
CAATGTTTGGTACCATTATGGATTTTATAGTTTGGTTGTTAACTCAGACT
GAACGTGTTTATATGACACCACACAATGCAAAAAGTTGGGGATATTTTGA
TGAAGAATTGATGGCGTGGGAAAGCGAAATGTAAGTTGTCCGTCAAGCCC
CCAGCAATTTTTCAGGGGGGCTAATGATAAAAGCACCCAGCTAAATTTTA
AGAATATAGCCCCCTTAAGGGAAGATTGCAGTTTAGGAGGATGCATTCTA
TGAAGTACTGTTCTGTACTGGTTTCTGAAAATATAAAGTTGCTTATTTTT
GAAGAATTGTTAAATTAGGGCGGGTGTACCGGATACAAGATTGCCAACTT
ATCAGCAAACTATTCATTCAGTTTTTCAGGAAAGATCGATCCATCTCTAT
TACCCACAATTCTTCCTGTTCAACAACCTATTGGCATGGCAACGGTTTCA
TGTCATGGAATCACCAAAAATCACACAGTTGTTTATGGAGCTTTGGGGGA
TATGCAATGCGCCGTCCGCTCTTGTCGACCGAAGGGAAATGAGGCTGGTG
AGCAATGTGGGGAGGGGAGGGGGGTATTTCAACAATCAGCGTGTATATTT
TTGCAACGAGGCTTTCTATGAAATATACAATTTTCGTGGAAGGGGTCAAC
CATTAAATTAATGAACGTTTTTGATAGTAAAGTCAGGGATGAGGTCCCAG
TTGGCACACGACGTTGCTTCAACGTTCATCTAACGTTATATGGACGTTGT
GAACGTTAGATGTACATTGAAACAACGTTGTGTGCCAGCTGGGGTCAGTA
CCGTCGTCAAAATGTGTAGTCTTTGGGAACTTACCCCACCTAGTCCAAGT
ACATCACTTTTCTAAAAATTTAAGAAATCCATAAACATATGGATGTCGTT
TTGATTTTAGTTTTGAACATTGGCACGTCAGCTCAGCTTTCCATCATTGT
GGACAAACGTTCAATGGTTCACCAAACAATCTCACAAAATCATTCTGAAT
TACAAATCGTTCCTTATGATCAGGAAAACGTCATTGTAACTGCTGCTTCG
CTGAATGGTATGTGTTTTAAATTTTGAAGGTTTAATGTGCCGGTGTTTGA
AGGATGACTGGCGAGTCTTTGTTTTGCTTAATTGTAGGTTCAAACTGTGA
GAAAAATAAGTCCTGATTGAAAGTTACTTTATCAGTTTGCTGTCCGGTTT
ATGCCTTTTATAAACGTTTGTCCCATCTTAAATTTCTAAACATCCAGCAA
ATTTCACAGCTCCAAAACTTCTTCCTTTAGATTGGAAGATTCCCCGAATG
TTGAATGATAGTAATCAGTTCTCAAGTCAATTATCGCGGCTCAAAAGCTC
ATTAAGCATTCCCAAATCTGAATGAAATGATAAAAGTGGTCCGCCAACCT
GGGCAGAAGCGGGCATGATCTTTAGAGTGGGTGTGTGCGCGTAGTAATAA
AGACCTTTTCGGAAAGCATCTTTTTTTTTTATAGGAGGGAATGTTTTGCA
TCAATTAGCCACCTCTCTCGTTTCATGGATGACCGACCTCGAATGTCAGA
ACGTACCCTCATCCAGCGAAGTCTTAATAAAATTCAACCAATTACAAACA
GATGCTGGTACATCCCTCCTGGAAATTTCACCCACAATTTTTGGCGAGCG
GCACGACCCGAAACTTTCAGCATCGGTGCGAAACATTCGACCCGATAACC
TTTCCCTCGGAAACATTGTTGCAGGAATGAGCCGAGGAATAATTGAGAAC
ATGTTTCGAATGATGTCGGTAGACTTTCTTCGGAAACACGACGTGCAAAG
GATTGTGGGTACTGGTGGAGCACTAAGAGCGAGTGAAACGTTGAGAGGAT
ATGTTGTTGAGATTTCAGGGTTGGAGTTGAGGATGGCCGAACAAACTGAT
GCTTCACTTGGTTCGATGCTTTTCGTTCAAGAGGATTGAATATAGTTGAT
CAAGTTGCAAAAATTATCCAATTCTAATTGATAGAGATTAGAGGGGCAGC
AATTTGTTGAGTTTCAGACCACAAGTTTTTATTATTTAATAAGACATTGG
TGGGCCGTGCGCCCAATTTCACACCATGTGGAAAATTTTAGAAATGAAGT
TACGCTTTGGGAACGAGTTTTTGATGTGGGTGTGTGAGAATAAAATGGTA
GCATTTTTCGAATTTGACCTCGGCTCATTTGAAGTTAGTTAAGTTTCACA
AAAAAAGTCAACTGTAATATTTTTTCTAAATTGCTTTTCCGGTTTTCCTG
GCAAAAGACGACACGAAAACAATGGTGAAACGAAACATCGAGAGACGTAG
ACAATGCTATCGTTCGTGTTATATATCATTATGATATTACGATATAACAT
AGTTGTATATTATAAAACGTAATATGTTACGTGGCGGAAAATAGAGCCCC
TCCGATTATTTTTCGCTCACGCGGACAAAATTTCCGCCCGATTGCTAATT
TGCGTGTTTGAGGTTATTCTTTATTTTTCGATAGCATAGTCTACGAGAGA
TGTTAACGCCGGAAAGCACAAATAGACAAGATAATGAAATCAAATGACGT
ACAAAATGAGGATTCATTATACGTTGTAGTAATATTTCTAAATTTTTTGC
TGGCTCTCGGATAATTGCACGAAAAAATTCTCCGTACTCGGTTTGTACTT
CCGTAGTTCGGGAAGAGACTGAGTTTAGTCCGTGAGGAATTGGGGTCCAT
CTAGCCTTCGTGGCCACAGATATCTGTAAAGCCCGAAGGGCTATATAGGC
AACTTTAAGCTTTCTCCAGCAAAAAAAAGTGAAGCAAAAATTTGACTTTT
TAAATTTCGCGCCGATGGATAGGATCTAGCATTTTAATTGTTTTCGGAGC
GTNNCATATTTTAGTCACGTGACTTTGGTAGGAAATCCTTCCAAACCTAG
GCTTCACTTTTCGATAAAAGCCGCAAATCTAGCCCTTCGGGCTTTACAGA
TCTGTGTTCGTGGCCCCTTTTCAGCACTTATCCGTTAGTTAGCCTGATTC
GTCAACCTTGACATGACAAAGATAGTAAGTAAGTAAGTCTGCGACCGCAG
TCGGAGGTGACCCGAAGGCTCCTCTTTCGATAGCTGTCTACCCGAAGGTA
GGGGAGGGCGCCACTCTTTCTCCCTGGATTGCTCCACTTACCCTTGATCC
TTCTCTTAATTGCTGAGCATCTAGCAGAGATATCAAGTACCATTTTGGGA
ATCTTTGGTATGACCCGGCTGAGGGTTGAACCCACAACCTTGCGCACCGT
AGCCGGATGCTCTACCACTGCACTACGGTCGCTTTGACAAAGATAAGTAC
GTTTCACAATGTTGCAATCAGGTTGAAACCTAGGTTAGGGCCAGGGCAAA
CCAGTCCAACATTTCATCCAACGTGATTTTCCAATGTTGGATGAAATGTT
GGATGGAAAAACTTGCGTTGGATGAAGCAAAAATCAAGGCCGGGGCAAAC
CGATCCAACATTTCATCCGGCATGACTTGAAAAAAAATGAAAATTCAAAA
AAATAAAGAAAAAAGTACCACCAAACCAATCCAACACGGAAAATTACACA
ATTCAATGAGAGAGCTTCTTTGATCTCGCCGCAAATGTTGGATGAAATGT
TTGATGGCGATCAAACTTCATCCAACACCGTCCAACACGATTTTTTTCTT
CTTTTTTTGAATTTTCATCTTTTTCCAAAAATTTGAATTGACGCAAACCG
GTCCAAGATTTCATCCAACATCAGAAAAAAAGGCATGTTGGATCGGTTTG
CCCTGGCCTTTAGGAAGTACGAATATTGTACACTGTTCATGCCAGCTATA
ATCAAATGCTCGGAGAAAAATAATTGTGTATTTTCTTGTGTAGATTTCCC
AGTTTGGTGTTAAGTATGAGTGGAAGATAGGAAGGAAAGCTTGAGAAGAA
TTATTGACATAATATCTACTTTGTATTTTATTTTGAAAAATATTGCCTGA
TCTATTTACATTTTTGTAAAGCTCCTAATTTTTGTCTTTATCAATAAACA
ATAAAAAGAAAGCACTGCTCCCTTTGAAATATCCTAAGTCATAAAATCTA
CTTTCCTACAATTTTGAAATAAGTTGCTAAGGTAGGCTTCTAACTTTCCA
AAAGTTGGCTAGTTTTTTGGGACAATATTTTTCTTTTGCAGAGCCTGGTT
GACTTAAAAGTCCCATCTTTGCTTATTATGTTTGCTACGAAGTTTTACTT
AA Coding sequence (CDS) from alignment at sc0000067:324230..328981- >TCONS_00006493 ID=TCONS_00006493|Name=TCONS_00006493|organism=Clytia hemisphaerica|type=CDS|length=5832bp|location=Sequence derived from alignment at sc0000067:324230..328981- (Clytia hemisphaerica)
GAGGGAATGTTTTGCATCAATTAGCCACCTCTCTCGTTTCATGGATGACC
GACCTCGAATGTCAGAACGTACCCTCATCCAGCGAAGTCTTAATAAAATT
CAACCAATTACAAACAGATGCTGGTACATCCCTCCTGGAAATTTCACCCA
CAATTTTTGGCGAGCGGCACGACCCGAAACTTTCAGCATCGGTGCGAAAC
ATTCGACCCGATAACCTTTCCCTCGGAAACATTGTTGCAGGAATGAGCCG
AGGAATAATTGAGAACATGTTTCGAATGATGTCGGTAGACTTTCTTCGGA
AACACGACGTGCAAAGGATTGTGGGTACTGGTGGAGCACTAAGAGCGAGT
GAAACGTTGAGAGGATATGTTGTTGAGATTTCAGGGTTGGAGTTGAGGAT
GGCCGAACAAACTGATGCTTCACTTGGTTCGATGCTTTTCGTTCAAGAGG
ATTGATTTTGAACATTGGCACGTCAGCTCAGCTTTCCATCATTGTGGACA
AACGTTCAATGGTTCACCAAACAATCTCACAAAATCATTCTGAATTACAA
ATCGTTCCTTATGATCAGGAAAACGTCATTGTAACTGCTGCTTCGCTGAA
TGTTTTTCAGGAAAGATCGATCCATCTCTATTACCCACAATTCTTCCTGT
TCAACAACCTATTGGCATGGCAACGGTTTCATGTCATGGAATCACCAAAA
ATCACACAGTTGTTTATGGAGCTTTGGGGGATATGCAATGCGCCGTCCGC
TCTTGTCGACCGAAGGGAAATGAGGCTGATAGCTTCAGAAATAATAAAGA
AAAATGAAAATTACTTATCTATAGAAAATAATCAGAATTTGAATTCCAAG
ATGAGGGACGAGGTTCTTGGCGTCGATATCGGAACCACTCACACCAAGTG
TTGTTTGTTTACTGATGGAGAATTCAAATATGAATCGTCTCTCCATAATG
GCTACCAAGAGGCTGGTGAGCTTTCAATGTATACCCACAAAGAACAAAAT
ATCGGAGCATTAGTTCGCTCCTTAGATGATTGTTTGTCAAAGTTCGGAAA
TAATTTGAAAGTGTCTCGCTTTGTTGTAACGGGGCAAATGCACGGTATTG
TATTATGGAAACCAAAAATTATGGAGATAATAAATCATGAGACTTTTACC
TCTCTGATGAATGGATGTGTCAAAAAACATTCGAATTTGATCACGTGGGA
AGATCAAAGATGCGATGAAGAATTTTTGAAATCTTTCCCTAAAAGTCGTT
GTGGTAATGATGTTTCGACGGGGTATGGATTGGCTTCGTTGTTATGGTTA
CAGGAAGCAGGCAAATTGGAAGATTACACAATGTTTGGTACCATTATGGA
TTTTATAGTTTGGTTGTTAACTCAGACTGAACGTGTTTATATGACACCAC
ACAATGCAAAAAGTTGGGGATATTTTGATGAAGAATTGATGGCGTGGGAA
AGCGAAATGAGGGAATGTTTTGCATCAATTAGCCACCTCTCTCGTTTCAT
GGATGACCGACCTCGAATGTCAGAACGTACCCTCATCCAGCGAAGTCTTA
ATAAAATTCAACCAATTACAAACAGATGCTGGTACATCCCTCCTGGAAAT
TTCACCCACAATTTTTGGCGAGCGGCACGACCCGAAACTTTCAGCATCGG
TGCGAAACATTCGACCCGATAACCTTTCCCTCGGAAACATTGTTGCAGGA
ATGAGCCGAGGAATAATTGAGAACATGTTTCGAATGATGTCGGTAGACTT
TCTTCGGAAACACGACGTGCAAAGGATTGTGGGTACTGGTGGAGCACTAA
GAGCGAGTGAAACGTTGAGAGGATATGTTGTTGAGATTTCAGGGTTGGAG
TTGAGGATGGCCGAACAAACTGATGCTTCACTTGGTTCGATGCTTTTCGT
TCAAGAGGATTGATTTTGAACATTGGCACGTCAGCTCAGCTTTCCATCAT
TGTGGACAAACGTTCAATGGTTCACCAAACAATCTCACAAAATCATTCTG
AATTACAAATCGTTCCTTATGATCAGGAAAACGTCATTGTAACTGCTGCT
TCGCTGAATGTTTTTCAGGAAAGATCGATCCATCTCTATTACCCACAATT
CTTCCTGTTCAACAACCTATTGGCATGGCAACGGTTTCATGTCATGGAAT
CACCAAAAATCACACAGTTGTTTATGGAGCTTTGGGGGATATGCAATGCG
CCGTCCGCTCTTGTCGACCGAAGGGAAATGAGGCTGATAGCTTCAGAAAT
AATAAAGAAAAATGAAAATTACTTATCTATAGAAAATAATCAGAATTTGA
ATTCCAAGATGAGGGACGAGGTTCTTGGCGTCGATATCGGAACCACTCAC
ACCAAGTGTTGTTTGTTTACTGATGGAGAATTCAAATATGAATCGTCTCT
CCATAATGGCTACCAAGAGGCTGGTGAGCTTTCAATGTATACCCACAAAG
AACAAAATATCGGAGCATTAGTTCGCTCCTTAGATGATTGTTTGTCAAAG
TTCGGAAATAATTTGAAAGTGTCTCGCTTTGTTGTAACGGGGCAAATGCA
CGGTATTGTATTATGGAAACCAAAAATTATGGAGATAATAAATCATGAGA
CTTTTACCTCTCTGATGAATGGATGTGTCAAAAAACATTCGAATTTGATC
ACGTGGGAAGATCAAAGATGCGATGAAGAATTTTTGAAATCTTTCCCTAA
AAGTCGTTGTGGTAATGATGTTTCGACGGGGTATGGATTGGCTTCGTTGT
TATGGTTACAGGAAGCAGGCAAATTGGAAGATTACACAATGTTTGGTACC
ATTATGGATTTTATAGTTTGGTTGTTAACTCAGACTGAACGTGTTTATAT
GACACCACACAATGCAAAAAGTTGGGGATATTTTGATGAAGAATTGATGG
CGTGGGAAAGCGAAATGAGGGAATGTTTTGCATCAATTAGCCACCTCTCT
CGTTTCATGGATGACCGACCTCGAATGTCAGAACGTACCCTCATCCAGCG
AAGTCTTAATAAAATTCAACCAATTACAAACAGATGCTGGTACATCCCTC
CTGGAAATTTCACCCACAATTTTTGGCGAGCGGCACGACCCGAAACTTTC
AGCATCGGTGCGAAACATTCGACCCGATAACCTTTCCCTCGGAAACATTG
TTGCAGGAATGAGCCGAGGAATAATTGAGAACATGTTTCGAATGATGTCG
GTAGACTTTCTTCGGAAACACGACGTGCAAAGGATTGTGGGTACTGGTGG
AGCACTAAGAGCGAGTGAAACGTTGAGAGGATATGTTGTTGAGATTTCAG
GGTTGGAGTTGAGGATGGCCGAACAAACTGATGCTTCACTTGGTTCGATG
CTTTTCGTTCAAGAGGATTGATTTTGAACATTGGCACGTCAGCTCAGCTT
TCCATCATTGTGGACAAACGTTCAATGGTTCACCAAACAATCTCACAAAA
TCATTCTGAATTACAAATCGTTCCTTATGATCAGGAAAACGTCATTGTAA
CTGCTGCTTCGCTGAATGTTTTTCAGGAAAGATCGATCCATCTCTATTAC
CCACAATTCTTCCTGTTCAACAACCTATTGGCATGGCAACGGTTTCATGT
CATGGAATCACCAAAAATCACACAGTTGTTTATGGAGCTTTGGGGGATAT
GCAATGCGCCGTCCGCTCTTGTCGACCGAAGGGAAATGAGGCTGATAGCT
TCAGAAATAATAAAGAAAAATGAAAATTACTTATCTATAGAAAATAATCA
GAATTTGAATTCCAAGATGAGGGACGAGGTTCTTGGCGTCGATATCGGAA
CCACTCACACCAAGTGTTGTTTGTTTACTGATGGAGAATTCAAATATGAA
TCGTCTCTCCATAATGGCTACCAAGAGGCTGGTGAGCTTTCAATGTATAC
CCACAAAGAACAAAATATCGGAGCATTAGTTCGCTCCTTAGATGATTGTT
TGTCAAAGTTCGGAAATAATTTGAAAGTGTCTCGCTTTGTTGTAACGGGG
CAAATGCACGGTATTGTATTATGGAAACCAAAAATTATGGAGATAATAAA
TCATGAGACTTTTACCTCTCTGATGAATGGATGTGTCAAAAAACATTCGA
ATTTGATCACGTGGGAAGATCAAAGATGCGATGAAGAATTTTTGAAATCT
TTCCCTAAAAGTCGTTGTGGTAATGATGTTTCGACGGGGTATGGATTGGC
TTCGTTGTTATGGTTACAGGAAGCAGGCAAATTGGAAGATTACACAATGT
TTGGTACCATTATGGATTTTATAGTTTGGTTGTTAACTCAGACTGAACGT
GTTTATATGACACCACACAATGCAAAAAGTTGGGGATATTTTGATGAAGA
ATTGATGGCGTGGGAAAGCGAAATGAGGGAATGTTTTGCATCAATTAGCC
ACCTCTCTCGTTTCATGGATGACCGACCTCGAATGTCAGAACGTACCCTC
ATCCAGCGAAGTCTTAATAAAATTCAACCAATTACAAACAGATGCTGGTA
CATCCCTCCTGGAAATTTCACCCACAATTTTTGGCGAGCGGCACGACCCG
AAACTTTCAGCATCGGTGCGAAACATTCGACCCGATAACCTTTCCCTCGG
AAACATTGTTGCAGGAATGAGCCGAGGAATAATTGAGAACATGTTTCGAA
TGATGTCGGTAGACTTTCTTCGGAAACACGACGTGCAAAGGATTGTGGGT
ACTGGTGGAGCACTAAGAGCGAGTGAAACGTTGAGAGGATATGTTGTTGA
GATTTCAGGGTTGGAGTTGAGGATGGCCGAACAAACTGATGCTTCACTTG
GTTCGATGCTTTTCGTTCAAGAGGATTGATTTTGAACATTGGCACGTCAG
CTCAGCTTTCCATCATTGTGGACAAACGTTCAATGGTTCACCAAACAATC
TCACAAAATCATTCTGAATTACAAATCGTTCCTTATGATCAGGAAAACGT
CATTGTAACTGCTGCTTCGCTGAATGTTTTTCAGGAAAGATCGATCCATC
TCTATTACCCACAATTCTTCCTGTTCAACAACCTATTGGCATGGCAACGG
TTTCATGTCATGGAATCACCAAAAATCACACAGTTGTTTATGGAGCTTTG
GGGGATATGCAATGCGCCGTCCGCTCTTGTCGACCGAAGGGAAATGAGGC
TGATAGCTTCAGAAATAATAAAGAAAAATGAAAATTACTTATCTATAGAA
AATAATCAGAATTTGAATTCCAAGATGAGGGACGAGGTTCTTGGCGTCGA
TATCGGAACCACTCACACCAAGTGTTGTTTGTTTACTGATGGAGAATTCA
AATATGAATCGTCTCTCCATAATGGCTACCAAGAGGCTGGTGAGCTTTCA
ATGTATACCCACAAAGAACAAAATATCGGAGCATTAGTTCGCTCCTTAGA
TGATTGTTTGTCAAAGTTCGGAAATAATTTGAAAGTGTCTCGCTTTGTTG
TAACGGGGCAAATGCACGGTATTGTATTATGGAAACCAAAAATTATGGAG
ATAATAAATCATGAGACTTTTACCTCTCTGATGAATGGATGTGTCAAAAA
ACATTCGAATTTGATCACGTGGGAAGATCAAAGATGCGATGAAGAATTTT
TGAAATCTTTCCCTAAAAGTCGTTGTGGTAATGATGTTTCGACGGGGTAT
GGATTGGCTTCGTTGTTATGGTTACAGGAAGCAGGCAAATTGGAAGATTA
CACAATGTTTGGTACCATTATGGATTTTATAGTTTGGTTGTTAACTCAGA
CTGAACGTGTTTATATGACACCACACAATGCAAAAAGTTGGGGATATTTT
GATGAAGAATTGATGGCGTGGGAAAGCGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006493-exon-sc0000067-1575043694:328302..328981 | TCONS_00006493-exon-sc0000067-1575043694:328302..328981 | Clytia hemisphaerica | exon |
| TCONS_00006493-exon-sc0000067-1575043694:327885..328060 | TCONS_00006493-exon-sc0000067-1575043694:327885..328060 | Clytia hemisphaerica | exon |
| TCONS_00006493-exon-sc0000067-1575043694:327375..327521 | TCONS_00006493-exon-sc0000067-1575043694:327375..327521 | Clytia hemisphaerica | exon |
| TCONS_00006493-exon-sc0000067-1575043694:324230..326947 | TCONS_00006493-exon-sc0000067-1575043694:324230..326947 | Clytia hemisphaerica | exon |
| TCONS_00006493-exon-sc0000067-1510915933:328302..328981 | TCONS_00006493-exon-sc0000067-1510915933:328302..328981 | Clytia hemisphaerica | exon |
| TCONS_00006493-exon-sc0000067-1510915933:327885..328060 | TCONS_00006493-exon-sc0000067-1510915933:327885..328060 | Clytia hemisphaerica | exon |
| TCONS_00006493-exon-sc0000067-1510915933:327375..327521 | TCONS_00006493-exon-sc0000067-1510915933:327375..327521 | Clytia hemisphaerica | exon |
| TCONS_00006493-exon-sc0000067-1510915933:324230..326947 | TCONS_00006493-exon-sc0000067-1510915933:324230..326947 | Clytia hemisphaerica | exon |
| TCONS_00006493-exon-sc0000067-1491911889:328302..328981 | TCONS_00006493-exon-sc0000067-1491911889:328302..328981 | Clytia hemisphaerica | exon |
| TCONS_00006493-exon-sc0000067-1491911889:327885..328060 | TCONS_00006493-exon-sc0000067-1491911889:327885..328060 | Clytia hemisphaerica | exon |
| TCONS_00006493-exon-sc0000067-1491911889:327375..327521 | TCONS_00006493-exon-sc0000067-1491911889:327375..327521 | Clytia hemisphaerica | exon |
| TCONS_00006493-exon-sc0000067-1491911889:324230..326947 | TCONS_00006493-exon-sc0000067-1491911889:324230..326947 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:324230..328981 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR018484 | Carb_kinase_FGGY_N |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0005975 |
carbohydrate metabolic process |
| molecular_function |
GO:0016773 |
phosphotransferase activity, alcohol group as acceptor |
Blast
BLAST of TCONS_00006493 vs. Swiss-Prot (Human)
Match: SHPK (Sedoheptulokinase OS=Homo sapiens GN=SHPK PE=1 SV=3) HSP 1 Score: 215.312 bits (547), Expect = 9.317e-60 Identity = 153/472 (32.42%), Postives = 228/472 (48.31%), Query Frame = 1
Query: 76 RDEVLGVDIGTTHTKCCLFTDGE-----FKYESSLHNGYQEAGELSMYTH----KEQNIGALVRSLDDCLSKFGNN--LKVSRFVVTGQMHGIVLWKPKIMEIINHETFTSLMNGCVKKHSNLITWEDQRCDEEFLKSFPKSRCGNDVSTGYGLASLLWLQEAGK--LEDYTMFGTIMDFIVWLLTQTERVYMTPHNAKSWGYFDEELMAWESEIFSGKIDP-SLLPTILPVQQPIGMATVSCH---GITKNHTVVYGALGDMQCAVRSCRPKGNEAVLNIGTSAQLSIIVDKRSMVHQTISQNHSELQIVPYDQENVIVTAASLNGGNVLHQLATSLVSWMTDLECQNVPSSSEVLIKFNQLQTDAGTSLLEISPTIFGERHDPKLSASVRNIRPDNLSLGNIVAGMSRGIIENMFRMMSVDFLRKHDVQRIVGTGGALRASETLRGYVVEISGLELRMAEQTDASLGSML 1440
R LG+D+GTT K L F +S + + +EQ++ ++++L +CL+ V V+GQMHG+V WK T + + S+L+TW+D RC EFL S P+ + V+TG+G A++ WL + L+ Y GTI D++V +L R M+ NA SWGYF+ + +W E P LLP I +P +A + H I K T V ALGD+Q +V SC + +AVLNI TS QL+ + QT + + PY + AASLNGGNVL LV WM DL + S V + Q + L I+PT+ GERH P ASV I +LSLG++ + RGI++N+ M+ + L+ V+R++G+G AL ++ L+ V L + + DA++G+ L
Sbjct: 4 RPITLGIDLGTTSVKAALLRAAPDDPSGFAVLASCARAARAEAAVESAVAGPQGREQDVSRILQALHECLAALPRPQLRSVVGIGVSGQMHGVVFWKTGQGCEWTEGGITPVFE--PRAVSHLVTWQDGRCSSEFLASLPQPKSHLSVATGFGCATIFWLLKYRPEFLKSYDAAGTIHDYVVAMLCGLPRPLMSDQNAASWGYFNTQSQSWNVETLRSSGFPVHLLPDI---AEPGSVAGRTSHMWFEIPKG-TQVGVALGDLQASVYSCMAQRTDAVLNISTSVQLAASMPSGFQPAQTPDPT-APVAYFPYFNRTYLGVAASLNGGNVLATFVHMLVQWMADLGLEV--EESTVYSRMIQAAVQQRDTHLTITPTVLGERHLPDQLASVTRISSSDLSLGHVTRALCRGIVQNLHSMLPIQQLQDWGVERVMGSGSALSRNDVLKQEVQRAFPLPMSFGQDVDAAVGAAL 466
The following BLAST results are available for this feature:
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