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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065203 ID=TCONS_00065203|Name=TCONS_00065203|organism=Clytia hemisphaerica|type=transcript|length=1209bp
AGAAGGTTCAAAGTTGAGGTTGGATTCAATCTTTAgacaaaactttttca
accttttttggaaaagtcaATTTTGGAAAGAATATTTTGGGTAACTAACA
CAATGAAAAAGTCCAGCGTAAACTCACTGATCATGTTTTGGTTTCAATTT
CTGATTTGCTTTTCGTATTTGATTGGACGCAATTCGGGGATAGCGAGTAA
CTCCATTATCATCTTACCGAACAATAAGAGTGCAgTGACGAAAATTTTGG
CATTCTGTAAACACAACAAAGACTATTGTGATTCATTGTTTGGTGGTGTA
ACACGTGAGAAAATAATGGCAAATAGACGATTGCTATTGGATCAAAAATG
GTCACATGAGAGAAATGAAGCTAATGAACGATCCTTATTGGATGATTATt
ggtcacgtgataaaaatgtACAGANTGTCACATGAAAGAAATGAAGCTAA
TAAACGATCCTTATTGGATGATTATtggtcacgtgataaaaatgtACAGA
ACAAGCGATTTATATTGGTGGAGAAGTTTCATGATGACAAATCGAGGCAC
GGTCGTAGAAGAATCGGAAGAAAAGTTTTCTTGGATAGATAAAGACTTTG
ATCGATTCTAGTCGTGAATTTAATGTCAAAATTATGAGAGAATGAATACA
caaatttcctattagcagattcatataAAAGTCGCATGACAAAACGTCAA
GTAAAGCTTTGATTGGCTGAaacatgcaaagattacctcatactttGGTC
ATGTtgataaaaatatgtttatgtAAGCATTTCTAAGCCAATCAGAGCTt
ttctcgacgttttttcgtgacttttttatatGAATCTGCTAANGtcagag
ctttactcgacgttttttcgtgacttttttatatgaatctgctaatagga
aatgcGTGTATTCTTTATGTTCTACTACCGGGTGGTCCGAAAAAGTTTCC
ATAAGTTCAGAAATTTTAAGGAGTGACACagataaaatgttaaaaattca
ccatgtaaaattaatttgaagtcCACAACAcaaatagaaactttttttgg
accacccagTAAATATATGCTTTCTGAATAAGAAATTGATGctaaatttt
ggccaaaaactaaaataaaatcaagaaatttaCGAGCCTAAAATgagatc
aaaaaattgaattatttgaaATTATGAATGGCACTAAGGGCatgaaaaac
acgaaaatt Run BLAST on NCBI protein sequence of TCONS_00065203-protein >TCONS_00065203-protein ID=TCONS_00065203-protein|Name=TCONS_00065203-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MKKSSVNSLIMFWFQFLICFSYLIGRNSGIASNSIIILPNNKSAVTKILA
FCKHNKDYCDSLFGGVTREKIMANRRLLLDQKWSHERNEANERSLLDDYW
SRDKNVQXVT Run BLAST on NCBI transcript from alignment at scaffold_433:301569..303150- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065203 ID=TCONS_00065203|Name=TCONS_00065203|organism=Clytia hemisphaerica|type=transcript|length=1582bp|location=Sequence derived from alignment at scaffold_433:301569..303150- (Clytia hemisphaerica)
AGAAGGTTCAAAGTTGAGGTTGGATTCAATCTTTAGACAAAACTTTTTCA
ACCTTTTTTGGAAAAGTCAATTTTGGAAAGAATATTTTGGGTAACTAACA
CAATGAAAAAGTCCAGCGTAAACTCACTGATCATGTTTTGGTTTCAATTT
CTGATTTGCTTTTCGTATTTGATTGGACGCAATTCGGGGATAGCGAGTAA
CTCCATTATCATCTTACCGAACAATAAGAGTGCAGTAAGTATTTCAACGT
TTTCACACCCCTGTCTCAGTGACTTCGTGAAGTTTGAAATCCACCAGGGT
GGCAATGAAAATAGTTTCACCGGATTTGAATTTATTTGAGATCTCAAAAA
CTTTACTGGGACGAGAGCTTTTAACTCAATTTTCAAGATATGGAAAATCA
ACTTTCAAGCATTATCCCTAGAATTCAAAAATACTCACAAAACGATAAAA
ATAAGAACAAGTTAAGAACACTTTTAAGCTTCGTCTTCAAACTCAAAAAG
TTAAGAACATTTTGGATGTTCTTATAACAAAAACGTGTATAACGTATATT
CTGTAAAAGTCGTGGTCCAGTTGCAAATTTCATTTTATCCTTTTTTTTTA
TTATTAGGTGACGAAAATTTTGGCATTCTGTAAACACAACAAAGACTATT
GTGATTCATTGTTTGGTGGTGTAACACGTGAGAAAATAATGGCAAATAGA
CGATTGCTATTGGATCAAAAATGGTCACATGAGAGAAATGAAGCTAATGA
ACGATCCTTATTGGATGATTATTGGTCACGTGATAAAAATGTACAGANTG
TCACATGAAAGAAATGAAGCTAATAAACGATCCTTATTGGATGATTATTG
GTCACGTGATAAAAATGTACAGAACAAGCGATTTATATTGGTGGAGAAGT
TTCATGATGACAAATCGAGGCACGGTCGTAGAAGAATCGGAAGAAAAGTT
TTCTTGGATAGATAAAGACTTTGATCGATTCTAGTCGTGAATTTAATGTC
AAAATTATGAGAGAATGAATACACAAATTTCCTATTAGCAGATTCATATA
AAAGTCGCATGACAAAACGTCAAGTAAAGCTTTGATTGGCTGAAACATGC
AAAGATTACCTCATACTTTGGTCATGTTGATAAAAATATGTTTATGTAAG
CATTTCTAAGCCAATCAGAGCTTTTCTCGACGTTTTTTCGTGACTTTTTT
ATATGAATCTGCTAANGTCAGAGCTTTACTCGACGTTTTTTCGTGACTTT
TTTATATGAATCTGCTAATAGGAAATGCGTGTATTCTTTATGTTCTACTA
CCGGGTGGTCCGAAAAAGTTTCCATAAGTTCAGAAATTTTAAGGAGTGAC
ACAGATAAAATGTTAAAAATTCACCATGTAAAATTAATTTGAAGTCCACA
ACACAAATAGAAACTTTTTTTGGACCACCCAGTAAATATATGCTTTCTGA
ATAAGAAATTGATGCTAAATTTTGGCCAAAAACTAAAATAAAATCAAGAA
ATTTACGAGCCTAAAATGAGATCAAAAAATTGAATTATTTGAAATTATGA
ATGGCACTAAGGGCATGAAAAACACGAAAATT Coding sequence (CDS) from alignment at scaffold_433:301569..303150- >TCONS_00065203 ID=TCONS_00065203|Name=TCONS_00065203|organism=Clytia hemisphaerica|type=CDS|length=666bp|location=Sequence derived from alignment at scaffold_433:301569..303150- (Clytia hemisphaerica)
GTGACGAAAATTTTGGCATTCTGTAAACACAACAAAGACTATTGTGATTC
ATTGTTTGGTGGTGTAACACGTGAGAAAATAATGGCAAATAGACGATTGC
TATTGGATCAAAAATGGTCACATGAGAGAAATGAAGCTAATGAACGATCC
TTATTGGATGATTATTGGTCACGTGATAAAAATGTACAGANTGTCACATG
AATGAAAAAGTCCAGCGTAAACTCACTGATCATGTTTTGGTTTCAATTTC
TGATTTGCTTTTCGTATTTGATTGGACGCAATTCGGGGATAGCGAGTAAC
TCCATTATCATCTTACCGAACAATAAGAGTGCAGTGACGAAAATTTTGGC
ATTCTGTAAACACAACAAAGACTATTGTGATTCATTGTTTGGTGGTGTAA
CACGTGAGAAAATAATGGCAAATAGACGATTGCTATTGGATCAAAAATGG
TCACATGAGAGAAATGAAGCTAATGAACGATCCTTATTGGATGATTATTG
GTCACGTGATAAAAATGTACAGANTGTCACATGAATGAAAAAGTCCAGCG
TAAACTCACTGATCATGTTTTGGTTTCAATTTCTGATTTGCTTTTCGTAT
TTGATTGGACGCAATTCGGGGATAGCGAGTAACTCCATTATCATCTTACC
GAACAATAAGAGTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065203-exon-scaffold_433-1575043694:302917..303150 | TCONS_00065203-exon-scaffold_433-1575043694:302917..303150 | Clytia hemisphaerica | exon |
| TCONS_00065203-exon-scaffold_433-1575043694:301569..302543 | TCONS_00065203-exon-scaffold_433-1575043694:301569..302543 | Clytia hemisphaerica | exon |
| TCONS_00065203-exon-scaffold_433-1510915933:302917..303150 | TCONS_00065203-exon-scaffold_433-1510915933:302917..303150 | Clytia hemisphaerica | exon |
| TCONS_00065203-exon-scaffold_433-1510915933:301569..302543 | TCONS_00065203-exon-scaffold_433-1510915933:301569..302543 | Clytia hemisphaerica | exon |
| TCONS_00065203-exon-scaffold_433-1491911889:302917..303150 | TCONS_00065203-exon-scaffold_433-1491911889:302917..303150 | Clytia hemisphaerica | exon |
| TCONS_00065203-exon-scaffold_433-1491911889:301569..302543 | TCONS_00065203-exon-scaffold_433-1491911889:301569..302543 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_433 | supercontig | scaffold_433:301569..303150 - |
Blast
The following BLAST results are available for this feature:
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