TCONS_00065177 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065177
Unique NameTCONS_00065177
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length751

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065177 ID=TCONS_00065177|Name=TCONS_00065177|organism=Clytia hemisphaerica|type=transcript|length=751bp
CCCAGCTTTAGAAGACAAAAGGAACAACAGTTTGAATTTTGGCAATCATC
CAATCTCCATAATATTTATCGCATGATGTATAATATGTTTTCGATTTATT
CAAACTTGGTCTGACAGTAATAATGAACTATATCGACGCTTAACTTTTAG
GTGTTGGACGTATGCTGGCAGAGTGCAATCATGTGCCCATCATTTTACCA
TTTTGGCATTGCGGTATGGAAGATGTTTTACCGTGTGCTGAACCCTACAT
TCCGAGGTTTGGAAAGAAAGTGACAGTGTTGATCGGAGAACCGATCGAAA
TGAAAAGTGTCATCGAAGAATGTCAAAAAGACCAACTGTGCGAGGAAAAG
ACGCGTATCAAACTCACCAACGTCATTCAAGAGAAAATGTACGCGCTACA
AGAAGAGACAGAACGTCTGCACGCTGAAAGGATCAGTTAACAGAGTGAAG
TTTCTAGTCTATACTTTGTTGACAACCCAGCAGGTATTGTTTTTATTATC
ATGCTTTTAAACGAGGTAGGGGCACATCAATCATCACAATCATTTTTACA
TTCAAGTCTCTTAAGTCTTGTGTTTGAGTTTGTTTTAGCCCTGTTTTCTC
ATATAGTTTTATATCGAATTCTTTGCCCTCCGTTTAAAATGTAATCTATT
TTTAATGTaatgaaattgttttaaaacttaGTTTTGTACATACCTCTtgt
tagtaattttttttttgaaaatacatgCATATAATTATTTACGGAATACT
C
Run BLAST on NCBI

transcript from alignment at scaffold_433:278930..281805+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065177 ID=TCONS_00065177|Name=TCONS_00065177|organism=Clytia hemisphaerica|type=transcript|length=2876bp|location=Sequence derived from alignment at scaffold_433:278930..281805+ (Clytia hemisphaerica)
CCCAGCTTTAGAAGACAAAAGGAACAACAGTTTGAATTTTGGCAATCATC
CAATCTCCATAATATTTATCGCATGATGTATAATATGTTTTCGATTTATT
CAAACTTGGTCTGACAGTAATAATGAACTATATCGACGCTTAACTTTTAG
GTGTTGGACGTATGCTGGCAGAGTGCAATCATGTGCCCATCATTTTACCA
TTTTGGCATTGCGGTATGCTGTTGCATCCACTGTTCTTAACCCTGACTAT
GTTAAACAATAAAAAGGGCTTTTTTAGAAACCAGAGAGTGGCCATTGTTA
AAAATGGTAACCAAATCTGTCAGCTGGGTAAACTACAAAAAAATATACAG
GATTTGCTTTCATGTCCGTATGTAAatgtgaatttgaaaaatgaatttca
aattagcATATTAGTTTTTGTTCAATGGTTGCAAAGGTTATTGCAGCTAA
ATAACTATTACACGGCTCTTTCGTGAAGTAGAATCTACGTGAACCCTTTT
GCTCCCGAAATTTTAATTTCTAAGTTTATCAATATATCATGCTCGTGCTT
TTCTGTCGTTCAGGTATGGAAGATGTTTTACCGTGTGCTGAACCCTACAT
TCCGAGGTTTGGAAAGGTATTGTAAAAATGCCCTTTGGGTTAGCTAAATT
ATCACtgcttttaatatttttcttacgTTTGCTCAGTATTATAATGATTA
ATGTGATCAATGAAATGCATGTAATAGCTCTCTCTAGTGTTAACTCCCCC
TAAGAAAGTAAAAGGTTATGTTTATCCCATTTAAGGCACATCTATACAGG
TCAAAACAGAAAAACAAGTGCGACCAATATATTATAAAAAAGGCTTTAAA
ATGTCAGaatatattgaataaaaacttcttcaaaaaaatattttcacaat
cTTTAATCAAAATGTTCCCTATCTATATCAAAAGAGTGGGCGTTCGAGAT
TCAATTCTTGAATTCACAACGCCATAGGGCAAAACCATTTCCAGAGAATC
ATGACTTGCAcgttatttttagaaatataaTGTGATTGTAATTTGATCTT
GATTATCGTTGCTCTTATAAACAACGTAGCTAAACATATTTATATTTGCA
CAATTAGTATGAAGATTCTTAGAAGTCCGTCAATTTCGAATTTGACGGTA
GTGAAAACCCGACGATTTCAGGTCTACATACATTGCGAACTTGCCCAGAA
TACGCATATCAAACACTTTTGTTTTTGCTCGGtctatttttgtttattat
CATCTTTCATTGTTAGAAAGTGACAGTGTTGATCGGAGAACCGATCGAAA
TGAAAAGTGTCATCGAAGAATGTCAAAAAGACCAACTGTGCGAGGTTAGT
ACTATAGTTTCAAACTTTATTGTGATTTAGGTAGGTCAAATTCAGAAGGC
GTTTGTTCCTTAAGAAGACTAGTAAAGCCAGGTATCGAAACTTTCTTTAG
TATCTTGGTTAGGCTTGGAGTCACATAAACATCTTATTGTGTTTTCTTGA
AGTACGCAACTTACGACAACCTATATTCCCTCTTTTTAACGACGTTTTCC
CCCCACTGATCAAACTTGGTAGGAAGAAAAACTCCGATCTAAAAAAGTGG
AACGTTATGTTTGGTTTCCTAaagtaatagacgatatcggcttaacgtga
aaactcagatttgatccccgaatattgcccacaatgctttgcgcggaaaa
aagttcacggtgaaattttttccgcacaaagcattgtgggcaatattcgg
ggatcaaatctgagttttcacgttaagccgatatcgtctattgcaaaaaa
tgtttgCTTCCTTGAAAATAGGGAACCGTGTTGTATCGATAAAGGGACTA
CCACGCTCTTCCCATACTATTTTCTCCGATTCGGGGAATGAAAATAGTTG
ATAANGTTGTATCGATAAAGGGACTATCACGTTCTTCCCATATTAGTTTC
TCCGATTCGGGGAAGGAAAGTAGTTGATAAAGTGTTTCGCGTACCAGTAC
TACATAAAGGTTGTTACTTAAATTTGGCTTTAGTGAGAATGTCAAACGCG
CTATGTGGTATTTCCTCTTGAAAGTAATCAAAACCTAGGGTGCCATTGCG
ATTCACTGTGCTCTTAACGTTTCGTGTATGTAACTTCAATATCTCAAAAC
CttaatttttgatgacttttGAGTGGCATCGAGCTGTAGAAGATGGTTTT
ATATTTCGGTTTCCAAAACGCAAGAAGAAATGTGGGTATGTCTCAGAATG
TGAAAGCCAAACCAAATgttgattttatttcaaaaaaggaaTAGCTGGTG
TTTGCGGCCTTTTGTTTCCTCCAATTCAGTTTCTTATCCTAATCCTAATG
TAAACGCATTGGTCACCTCTCCTTGAAAAATGTCTTCTAAATACCTTATT
TCCCTATTCTGGAAGAAAAAGTTGCACTCTTGAAGATTGACCTTATCTTT
GGTATTGTGTTTTCTACAGGAAAAGACGCGTATCAAACTCACCAACGTCA
TTCAAGAGAAAATGTACGCGCTACAAGAAGAGACAGAACGTCTGCACGCT
GAAAGGATCAGTTAACAGAGTGAAGTTTCTAGTCTATACTTTGTTGACAA
CCCAGCAGGTATTGTTTTTATTATCATGCTTTTAAACGAGGTAGGGGCAC
ATCAATCATCACAATCATTTTTACATTCAAGTCTCTTAAGTCTTGTGTTT
GAGTTTGTTTTAGCCCTGTTTTCTCATATAGTTTTATATCGAATTCTTTG
CCCTCCGTTTAAAATGTAATCTATTTTTAATGTaatgaaattgttttaaa
acttaGTTTTGTACATACCTCTtgttagtaattttttttttgaaaataca
tgCATATAATTATTTACGGAATACTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040864XLOC_040864Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065177-exon-scaffold_433-1491911889:278930..279142TCONS_00065177-exon-scaffold_433-1491911889:278930..279142Clytia hemisphaericaexon
TCONS_00065177-exon-scaffold_433-1510915933:278930..279142TCONS_00065177-exon-scaffold_433-1510915933:278930..279142Clytia hemisphaericaexon
TCONS_00065177-exon-scaffold_433-1575043694:278930..279142TCONS_00065177-exon-scaffold_433-1575043694:278930..279142Clytia hemisphaericaexon
TCONS_00065177-exon-scaffold_433-1491911889:279493..279545TCONS_00065177-exon-scaffold_433-1491911889:279493..279545Clytia hemisphaericaexon
TCONS_00065177-exon-scaffold_433-1510915933:279493..279545TCONS_00065177-exon-scaffold_433-1510915933:279493..279545Clytia hemisphaericaexon
TCONS_00065177-exon-scaffold_433-1575043694:279493..279545TCONS_00065177-exon-scaffold_433-1575043694:279493..279545Clytia hemisphaericaexon
TCONS_00065177-exon-scaffold_433-1491911889:280196..280273TCONS_00065177-exon-scaffold_433-1491911889:280196..280273Clytia hemisphaericaexon
TCONS_00065177-exon-scaffold_433-1510915933:280196..280273TCONS_00065177-exon-scaffold_433-1510915933:280196..280273Clytia hemisphaericaexon
TCONS_00065177-exon-scaffold_433-1575043694:280196..280273TCONS_00065177-exon-scaffold_433-1575043694:280196..280273Clytia hemisphaericaexon
TCONS_00065177-exon-scaffold_433-1491911889:281399..281805TCONS_00065177-exon-scaffold_433-1491911889:281399..281805Clytia hemisphaericaexon
TCONS_00065177-exon-scaffold_433-1510915933:281399..281805TCONS_00065177-exon-scaffold_433-1510915933:281399..281805Clytia hemisphaericaexon
TCONS_00065177-exon-scaffold_433-1575043694:281399..281805TCONS_00065177-exon-scaffold_433-1575043694:281399..281805Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:278930..281805 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.4628	24.0004	18.0097	17.1121	14.4767	10.7421	13.0441	13.1571	14.7827	13.3915	12.3349	12.032	10.1433	10.4435	10.5931	8.45619	12.1863	14.5052	5.07951	5.75222	5.94904	7.31607	22.0652	18.6958	62.7586	38.8248	5.11602	2.87366	10.026	11.7694
Blast
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BLAST of TCONS_00065177 vs. Swiss-Prot (Human)
Match: TAZ (Tafazzin OS=Homo sapiens GN=TAZ PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.208e-23
Identity = 44/91 (48.35%), Postives = 61/91 (67.03%), Query Frame = 3 
Query:  150 GVGRMLAECNHVPIILPFWHCGMEDVLPCAEPYIPRFGKKVTVLIGEPIEMKSVIEECQKDQLCEEKTRIKLTNVIQEKMYALQEETERLH 422
            G+GR++AEC+  PIILP WH GM DVLP + PY PRFG+K+TVLIG+P     V+E  + +     + R  LT+ IQE+   L+ + E+LH
Sbjct:  195 GIGRLIAECHLNPIILPLWHVGMNDVLPNSPPYFPRFGQKITVLIGKPFSALPVLERLRAENKSAVEMRKALTDFIQEEFQHLKTQAEQLH 285
The following BLAST results are available for this feature:
BLAST of TCONS_00065177 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAZ1.208e-2348.35Tafazzin OS=Homo sapiens GN=TAZ PE=1 SV=1[more]
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