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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065101 ID=TCONS_00065101|Name=TCONS_00065101|organism=Clytia hemisphaerica|type=transcript|length=2816bpRun BLAST on NCBI transcript from alignment at scaffold_430:36527..51213- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065101 ID=TCONS_00065101|Name=TCONS_00065101|organism=Clytia hemisphaerica|type=transcript|length=14687bp|location=Sequence derived from alignment at scaffold_430:36527..51213- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00065101 vs. Swiss-Prot (Human)
Match: UBE4B (Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B PE=1 SV=1) HSP 1 Score: 661.374 bits (1705), Expect = 0.000e+0 Identity = 326/651 (50.08%), Postives = 462/651 (70.97%), Query Frame = 1
Query: 1 HSLLITTSLRDDCLRFLAAVLTRNAKKSQIQADEKLLATDGFMINVLTILQNLFRKVKLEKIDRTYVVNPQSRLNMSQFST-IKSSKEEMAQWKDSL-DEKKELSELSFSTECFYFTYFCHHISVIPAMRKYIQRMRAIRDMNKLITEIESHESEWKHTSLSARNTMXXXXXXXXXXXXVEQDVCAVAGLIDEELMRRCLRFYSSSARWLVDILTQGRGQNAEFPLPEDVPVVFGALPDFFIEDIVEFLLFIDIHLPQILDDLAMDDFVPLIVILLCNYNYIANPYLVAKLVELLFAMDPALQPRARNLYEKFANNTIAENHLMKALIKFYVDVESTGSSNEFYDKFGIRYHISIILKGLWKRPIHRQAFILETN-GDHFTRFINMLINDTTFLLDESVDTLKNIRDTQELMANTTEWEKLPREGRTSRQRQLATDERQCKSYLTLASETVDMLHYLTLEIKEPFLQEKLAERLSVMLNYNVKQFTGEKYRDLKVKKPEKYGFQPKILLDKITDIYIHLDSKPFANAVASDERSYRKELFDDCISLLQRTGLKSDMKLYQLRAFTDMVEEIYIENSKMALDLDDAPDEYRDPLMDTVMLDPVLLPSGTIMDRSVIDRHLLNSNTDPFSRQKLTEDMLKPVPDLKAKILEWV 1944
HS+L+ R+ L ++AAV+ N KK+Q+Q D++L++TDGFM+N L +LQ L K+KLE +D TY+ +P+ R+ + T + ++ E++ W L ++ SE F TECF+ T HH+S++P+ R+YI+R+RAIR++N+ + +++++ES+WK + L+ R+ +LK+ K QLK+LV CA AGL+DE +RRCL FY + L+ IL + PL DVP VF ALP+F++ED+ EFL FI + PQ L + D V +V++LCN NYI NPYLVAKLVE++F +PA+QPR + +E N+ ++ L+ +L+KFY DVE TG+++EFYDKF IRYHIS I K LW+ H F+ E N G F R+INMLINDTTFLLDES+++LK I + QE M N +W++LPR+ + +RQ QLA DER +SYL LA+ETVDM H LT ++++PFL+ +L RL+ MLN+N++Q G K RDLKV+ PEKYGF+PK LLD++TDIY+ LD FA A+A D+RSY KELF++ IS +++ G+KS + + + + + VEEI +N++ +D DAPDE+RDPLMDT+M DPV LPSGTIMDRS+I RHLLNS TDPF+RQ LTE ML+PVP+LK +I W+
Sbjct: 645 HSILLNGETREAALSYMAAVVNANMKKAQMQTDDRLVSTDGFMLNFLWVLQQLSTKIKLETVDPTYIFHPRCRITLPNDETRVNATMEDVNDWLTELYGDQPPFSEPKFPTECFFLTLHAHHLSILPSCRRYIRRLRAIRELNRTVEDLKNNESQWKDSPLATRHREMLKRCKTQLKKLVRCKACADAGLLDESFLRRCLNFYGLLIQLLLRILDPAY-PDITLPLNSDVPKVFAALPEFYVEDVAEFLFFIVQYSPQALYEPCTQDIVMFLVVMLCNQNYIRNPYLVAKLVEVMFMTNPAVQPRTQKFFEMIENHPLSTKLLVPSLMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQFVRYINMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLAQDERVSRSYLALATETVDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPKKLLDQLTDIYLQLDCARFAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLAEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWM 1294 The following BLAST results are available for this feature:
BLAST of TCONS_00065101 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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