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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065043 ID=TCONS_00065043|Name=TCONS_00065043|organism=Clytia hemisphaerica|type=transcript|length=1547bpRun BLAST on NCBI protein sequence of TCONS_00065043-protein >TCONS_00065043-protein ID=TCONS_00065043-protein|Name=TCONS_00065043-protein|organism=Clytia hemisphaerica|type=polypeptide|length=515bp KVRYSSDKMRTFYGLLAGSITLIVSLSLCTKVESTRPLFTLGGQLENGAERun BLAST on NCBI transcript from alignment at scaffold_428:300222..312066- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065043 ID=TCONS_00065043|Name=TCONS_00065043|organism=Clytia hemisphaerica|type=transcript|length=11845bp|location=Sequence derived from alignment at scaffold_428:300222..312066- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_428:300222..312066- >TCONS_00065043 ID=TCONS_00065043|Name=TCONS_00065043|organism=Clytia hemisphaerica|type=CDS|length=16995bp|location=Sequence derived from alignment at scaffold_428:300222..312066- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065043 vs. Swiss-Prot (Human)
Match: ADA10 (Disintegrin and metalloproteinase domain-containing protein 10 OS=Homo sapiens GN=ADAM10 PE=1 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 1.056e-36 Identity = 125/448 (27.90%), Postives = 208/448 (46.43%), Query Frame = 2
Query: 122 LGGQLENGA-------EGLDYDKVHLHNQHERVRRSANPEEERIFLTFKAFDREFNIELHHDPW------------KILDFKSSGNNGPDISKYLYSGWLKDESNTRVSGSVRNGILQATIYINDKPTFKIESSQRYPEIPSEKYHSLIYHYSDVK----------KLKSSNFGKMAGAAQIPMDDAMEVPESLEQAKEHKHSRQRRSTPFDPARKECLVLMVADYTYVAAHNYDIEEAYL-KMATTFDAAKQIYEQSDFDGDGNADGITLRIGGFNRTKNSTECVGDECRYNSTLGINELLTVFTTNDHGDYCLASLFVDRNFAPAATIGLAWVGV-------ICETYKRYRLDDGVTLSDRTYNTNWVTINSRGTPLTDAVVEIVTAHEFGHNYGSDHDNST-CQPSDV-----SPNGYYIMNPTAPQNGNLPNERQFSRCSLNEM 1336
+GGQ N EGL Y+ LH +H+R +R+ + E++ + L F A R FN+ + D K+LD+ +S ++Y+G + E + GSV +G + I TF +E ++RY + + +HS+IYH D+ S F +M +++ ++P+ A + R++R+T + + C + + D+ + Y EA + ++++ A IY+ +DF G N + RI N T + + + R+ +G+ + L + + +H DYCLA +F DR+F +GLAWVG ICE K Y DG ++ NT +T+ + G+ + V I AHE GHN+GS HD+ T C P + NG YIM A +G+ N +FS CS+ +
Sbjct: 17 MGGQYGNPLNKYIRHYEGLSYNVDSLHQKHQRAKRAVSHEDQFLRLDFHAHGRHFNLRMKRDTSLFSDEFKVETSNKVLDYDTS---------HIYTGHIYGEEGSFSHGSVIDGRFEGFIQTRGG-TFYVEPAERYIKDRTLPFHSVIYHEDDINYPHKYGPQGGCADHSVFERMRKYQMTGVEEVTQIPQEEHAANGPELLRKKRTTSAE--KNTCQLYIQTDHLFFKY--YGTREAVIAQISSHVKAIDTIYQTTDFSGIRNISFMVKRIR-INTTADEKD-PTNPFRF-PNIGVEKFLELNSEQNHDDYCLAYVFTDRDFDDG-VLGLAWVGAPSGSSGGICEKSKLY--SDG---KKKSLNTGIITVQNYGSHVPPKVSHITFAHEVGHNFGSPHDSGTECTPGESKNLGQKENGNYIMYARA-TSGDKLNNNKFSLCSIRNI 440 The following BLAST results are available for this feature:
BLAST of TCONS_00065043 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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