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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064889 ID=TCONS_00064889|Name=TCONS_00064889|organism=Clytia hemisphaerica|type=transcript|length=455bp
GTAGAGATGTAAAATTTCGATATGACTCTGGATTTAGTGGTAAGAAGTAT
CCAACAATGCCGGTACGATATCGAGCAAGATCCAATAGCGTGAGATGTAA
AACTGAATTAATCTTAAGACAAAGCAAGTATATGGATATCATtgggaaag
aaaattttgtggaGTCGTTGGAGAGTATGGATATCCATCACTACATCtca
acaaaaagtttgaaaagacaTAAACCGCTAGCGAAAGTTTGTGAGCAAGA
CAAGTTGTTGTCGTATCATGAACAGCCGTACTACGTCGGGAAAATGAGTC
GAAGTCAAAGTGAGCATTTTCTAATGAACAGATTCAAACGGGAACCATTT
TTGTTACGAGATTCGGAAAGTATGCCTTGTCACCTTACTCTTTCATTGCG
CCAACCAAACAACAGAATAGATCACATATGGATTGGCATCCTTTCTggaa
aattc Run BLAST on NCBI protein sequence of TCONS_00064889-protein >TCONS_00064889-protein ID=TCONS_00064889-protein|Name=TCONS_00064889-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
RDVKFRYDSGFSGKKYPTMPVRYRARSNSVRCKTELILRQSKYMDIIGKE
NFVESLESMDIHHYISTKSLKRHKPLAKVCEQDKLLSYHEQPYYVGKMSR
SQSEHFLMNRFKREPFLLRDSESMPCHLTLSLRQPNNRIDHIWIGILSGK
F Run BLAST on NCBI transcript from alignment at scaffold_425:386372..389032- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064889 ID=TCONS_00064889|Name=TCONS_00064889|organism=Clytia hemisphaerica|type=transcript|length=2661bp|location=Sequence derived from alignment at scaffold_425:386372..389032- (Clytia hemisphaerica)
GTAGAGATGTAAAATTTCGATATGACTCTGGATTTAGTGGTAAGAAGTAT
CCAACAATGCCGGTACGATATCGAGCAAGATCCAATAGCGTGAGATGTAA
AACTGAATTAATCTTAAGACAAAGCAAGTATATGGATATCATTGGGAAAG
AAAATTTTGTGGAGTCGTTGGAGAGTATGGATATCCATCACTACATCTCA
ACAAAAAGTTTGAAAAGACATAAACCGCTAGCGAAAGTTTGTGAGCAAGA
CAAGTTGTTGTCGTATCATGAACAGCCGTACTACGTCGGGAAAATGAGTC
GAAGTCAAAGTGAGCATTTTCTAATGAACAGATTCAAACGGGAACCATTT
TTGTTACGAGATTCGGAAAGTATGGTGAGTTTTTCTTCGTTTTTGCTTTT
TCTTATTTCTTGTTGTATTTGCAAAGAAGTTTGAATTCGTTAAAGAACTA
GTCTGAATAGTAAATTTCTACACGACATATCAGAGCACGTAACCGCTAGT
GCATGGTAGGGCCTAACAATGACCGGAGATACAACTCTAGGGCAGGGTGA
GATATGAAAATGTGATTCCAAGAAAATATTTTGTGCTTTTTGTTGAAATT
TTATTTTCATGTCAAATTTATTTCCTTGTTTCGAAGCCTTGAGTTGTAAG
TTTGTATTGCGGAAAGTTTTTGGTTGTTTCTTGACATTTGAGTGGAGTAT
ATTTTGAAATTTAAGTACAAACGTCATGTTTTTTCAGTTAAATATTTGCT
TAATATTTTTGACCTATAAAGATAGTGAGAAAATATTACACCAAAGTATG
ACATAACTTTTGTATGCATATGATTGCATCATTATCCTAAATCTTGGTAG
TTTTGTTTCAGCAAGAAATTACTATTACCACTCACTTTAAGTGTGCAACA
ACTTTTGTTTCACTTGCTATTCTCCAACCAATACTTCAAATATAACGAAC
CATATACCGTTGAAAAGATAATTTATAGAGCACTTTTTAATCTTCAAGAA
AAACTATTCTAAAAATTTAAGAAAATGAAGATGAAAAAGAAGAAGAAAAT
ACTGAATATTTTATCCTTTAGTCGTAGAAACTTCATTGTTTTTTATATGA
AGGTACTTTTAAGCCTCCTTATCTGAGATATACAATTATTTTTTAAATGT
AATTATTCCATAGAAAGTTATATGTCTTAGAAGGTTGCCCTTTGAAGTGG
AAACAAAACAGGTGTTTTCGACTCCCACGAGCTACCTTCTAGAAGATCTT
TATACTATAGCTGAGATTCTATTTACATGAAATGGGGATGATGTTAAAGG
CTAAACATCTATAAAGATGAATGAGAGCAACAACATATTGATTTTTCTCA
ATCAATTTATTCAAACGTTTCGTCAGCCTATCCAGATTAAATCCTCAGTT
AAATAAACAGGTTTTGTAATTTGCGAGCTCACAATTTCTTCATTCCGTGA
AGAGTGAAACATCTAATGAAAAAATGAAAAGGTTAAAATTCTATTTTCAG
TGAGAATCAAATAAACATGAAAACGAATTTTTCAGTAGTGTTAGATCACT
ACATCCCTGTGTCACAGACCCGCTGGGACCCCAGCCCCACTGGGAAATTT
GGCCGAAATTTCGTCCTTCAAAGTTTAAAAATTGCACTCCAAAACAAATC
CCCACTGGATTTTTTAACCTTGGAACAATATAATTTCTATCCCCATTGGG
ATTTCGATACACGTTTTTTTTTTTATTAGAACCCAGTTTATAAGAACATT
TAGGCTGAAATTCGTCGAAAATTTAAGAACATCGTAAGAACATGCCCAGC
CTCCGTTTGGAAAAAAATGACAAGAANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAATAAAAAAAAAAACGTGTAGGAGTTTTTAT
CCTCACTGAGGAAAAAAGTTCCACCGGGGCTGTGAGACAGGGTGTGTATC
ACTGAAAATAAATTTTATTTTTTCTCATAGCCTTGTCACCTTACTCTTTC
ATTGCGCCAACCAAACAACAGAATAGATCACATATGGATTGGCATCCTTT
CTGGAAAATTC Coding sequence (CDS) from alignment at scaffold_425:386372..389032- >TCONS_00064889 ID=TCONS_00064889|Name=TCONS_00064889|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at scaffold_425:386372..389032- (Clytia hemisphaerica)
CCTTGTCACCTTACTCTTTCATTGCGCCAACCAAACAACAGAATAGATCA
CATATGGATTGGCATCCTTTCTGGAAAATTCAGAGATGTAAAATTTCGAT
ATGACTCTGGATTTAGTGGTAAGAAGTATCCAACAATGCCGGTACGATAT
CGAGCAAGATCCAATAGCGTGAGATGTAAAACTGAATTAATCTTAAGACA
AAGCAAGTATATGGATATCATTGGGAAAGAAAATTTTGTGGAGTCGTTGG
AGAGTATGGATATCCATCACTACATCTCAACAAAAAGTTTGAAAAGACAT
AAACCGCTAGCGAAAGTTTGTGAGCAAGACAAGTTGTTGTCGTATCATGA
ACAGCCGTACTACGTCGGGAAAATGAGTCGAAGTCAAAGTGAGCATTTTC
TAATGAACAGATTCAAACGGGAACCATTTTTGTTACGAGATTCGGAAAGT
ATGCCTTGTCACCTTACTCTTTCATTGCGCCAACCAAACAACAGAATAGA
TCACATATGGATTGGCATCCTTTCTGGAAAATTCAGAGATGTAAAATTTC
GATATGACTCTGGATTTAGTGGTAAGAAGTATCCAACAATGCCGGTACGA
TATCGAGCAAGATCCAATAGCGTGAGATGTAAAACTGAATTAATCTTAAG
ACAAAGCAAGTATATGGATATCATTGGGAAAGAAAATTTTGTGGAGTCGT
TGGAGAGTATGGATATCCATCACTACATCTCAACAAAAAGTTTGAAAAGA
CATAAACCGCTAGCGAAAGTTTGTGAGCAAGACAAGTTGTTGTCGTATCA
TGAACAGCCGTACTACGTCGGGAAAATGAGTCGAAGTCAAAGTGAGCATT
TTCTAATGAACAGATTCAAACGGGAACCATTTTTGTTACGAGATTCGGAA
AGTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064889-exon-scaffold_425-1575043694:388659..389032 | TCONS_00064889-exon-scaffold_425-1575043694:388659..389032 | Clytia hemisphaerica | exon |
| TCONS_00064889-exon-scaffold_425-1575043694:386372..386452 | TCONS_00064889-exon-scaffold_425-1575043694:386372..386452 | Clytia hemisphaerica | exon |
| TCONS_00064889-exon-scaffold_425-1510915933:388659..389032 | TCONS_00064889-exon-scaffold_425-1510915933:388659..389032 | Clytia hemisphaerica | exon |
| TCONS_00064889-exon-scaffold_425-1510915933:386372..386452 | TCONS_00064889-exon-scaffold_425-1510915933:386372..386452 | Clytia hemisphaerica | exon |
| TCONS_00064889-exon-scaffold_425-1491911889:388659..389032 | TCONS_00064889-exon-scaffold_425-1491911889:388659..389032 | Clytia hemisphaerica | exon |
| TCONS_00064889-exon-scaffold_425-1491911889:386372..386452 | TCONS_00064889-exon-scaffold_425-1491911889:386372..386452 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_425 | supercontig | scaffold_425:386372..389032 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000980 | SH2 |
Blast
The following BLAST results are available for this feature:
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