TCONS_00064838 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064838
Unique NameTCONS_00064838
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1764

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064838 ID=TCONS_00064838|Name=TCONS_00064838|organism=Clytia hemisphaerica|type=transcript|length=1764bp
GCGGATTAcgaattctcattttacacaaTGGAAGAAGAAGGTTTATTGAT
GTCAGGTTTTATGAAGAGTCCTTACGATTACGAAGCTATCTATTTAGCTG
GTGGAAAAGCCCACTACATTTTCAATGCTGGTGCAGGCTCCTTGACTTTG
TCATCCAAGAGTACCGTCAATGATGGAAAATGGCATACTATCAAAGCGAC
ACGTTCTAAGAGAGCTGGAACGTTGTACGTTGATGGAGATATTGCAGCTG
TCGGTGAATCAAAACCAGGAGCATCTGCTGTCAACAACATTAACAAAGTC
TACTTTGGTGGATTGCCCTCCACTTCGCTTGTCATCCCTAAAACTCCGAA
AACATCTCAAATTCCACTGAAAGGAGGAATGAAGGACTTTAAACTTTTCA
ACGAAGCTCTGGTCACGCCTGCTGCTAGTGTTGGAACGTCACCAGCGTAC
AACGGATTGCCATATGTTAACGCTGTCTCCTTTGGTGCCAATGGTGGATT
TGCCCAGAAATTCAAGCAATTGAAAATCGGACAAAATTTCAAGATCTCAT
TCGACGTCCGTGCGGCTAACAAAGCCGGCTCCCTCTTTTACGTGTACGGA
GGAGGTGATCATTTGTCCGTCACCGTCGAAGAAAACGGTTCGATCAAGGT
GACGTGTAACAACGGTGGAGGGTTGTTCTCCGTGGCGTACAAACCGGAAC
CTTCCGTTTGCAACGGTGATATTTACAGTGTGCTTGtggagaagaaaatg
aaaacattaaaattgACAGTCAATGGTGCCGTGACCGAAGAAACGACCAC
CAAATCAAGCACGTCTGCTGACACCAACTCGCCCGCTTACTTTGGTGGAC
TTCCAGACAATTTGAGATCAAACTGGTCCAAGATTTCTGACAGCAAAGAC
TACAAGCCCTTCGAAGGTTGTATCAGCAAAGTGGAAATTAATGACGAAGC
TATCGACTTCacaagtgacgtcatcaaaaatggcGCCGTCATGACGGGAT
GTCCTGAATGAACAAGAATGATGGAAAAATTTTGActtgttacaattttt
tttacaattttttagattatttttcatatttacttagattaccttttttg
aaaatatagcaCAGCGGAAGCACAACTATACCTGGCTTCGCtaaaacaat
ttattttttcagtgTACTTCAAACGCAGGAATAAAATAAGTGTTTCGATT
TAAAGTCGTCAATTTTTCCGACTGAATAAAATTTAAAGGgcagagttttt
tattttttcgctgtGCTATACATTTATACATTTATTATTATCtctatttt
cagtttttccgTCTTTCTATAAACTGGTATGCTCTCCAAACGAACAGGTG
TCGATACCTTTTACGCCGCCCCTCCGCCCCTAAACAATATGCTATGTAAA
AAATCTGTATTGGTATAAAAAGCAtagaaaatgacttttttcaaacttct
tctTAGTACCTTagaccatagaggtataaagaaNACATGCTTAGACCTAA
TACCTTTGCAAATTTTTACTTACAAAGCATATCAGTATTTTCATTGGAAC
AACTTATTTTCAACAaggttttcgatttttttttcagccgaTGGAAAGGA
GATCATTAGAATTTTGCCATGAAAGCTAATTTTTCGAGAAATAAGTTGTT
TCCTTTTTACaccttttagcaaaaaaaaaacccgcaaaattatttttgtt
gatgAATTTATGCAGTTATTGTAAACAGTTTTTTTAACatctttttgttt
attctgaaaaattt
Run BLAST on NCBI

transcript from alignment at scaffold_425:72563..77820+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064838 ID=TCONS_00064838|Name=TCONS_00064838|organism=Clytia hemisphaerica|type=transcript|length=5258bp|location=Sequence derived from alignment at scaffold_425:72563..77820+ (Clytia hemisphaerica)
GCGGATTAcgaattctcattttacacaaTGGAAGAAGAAGGTTTATTGAT
GTCAGGTTTTATGAAGAGTCCTTACGATTACGAAGCTATCTATTTAGCTG
GTGGAAAAGCCCACTACATTTTCAATGCTGGTGCAGGCTCCTTGACTTTG
TCATCCAAGAGTACCGTCAATGATGGAAAATGGCATACTATCAAAGCGAC
ACGTTCTAAGAGAGCTGGTTAGTTTTATACTTTCGATATTttcgagttta
tgtatttgcactttttagGACGGCGGAGTGAAAGAAGCGATTTGATATAA
CACGCAGTTTTGATATGCAAAAATTGAAGAGGGTAAAAGTGCTTTTTTAC
CGTTGTCTTCATTTGATCCAGAGGACTGTAAAGAGatgaaaaaaaagctt
ttctgattactcaaagttcaacgatcacttcttttgaaaattctattgta
aaaacgttgattaggtcattaaacgaaagtccagaaaaggaggctcgcca
tacaaatcggacggtttctataTGGTTAGACgataaatatgaaaatttgt
ttttcctttttcgccgattactagttcaatctTAAAGAACAAGGAACaat
ttttttaccaatgtatagcaaaagaaattcttaacgcaatgatattaaat
tgattcttgtaaaactgtcagaaatcagtaaaatcaagatgaagttatat
tTTTGCTCGAGCTCTAGATTTCCATACAATTGTGtgtgatgcggttatat
cagtggaatcgctaggaaattcttagcaagaagatataggtaccttttct
aataggagaggtgtacccaaaatataagtcCTAAAAGtctgcgcataatc
aggcttgaaacaaaagaattttgtcacaacacgctaattatgcagatttt
tcatagcgacaacaaaagaaacctattaactcgacataaactcccttaat
ggcaagagacctggtatacggcgagccgtttttccattgttttcaagaca
ctgtttttccatctctttacatttcTCTGTTTGATCAGGATCTAGACTAA
ATAGAAGCTAACCGTCTTCGTTCCAGAACAacacaaatacataaactcga
taTTACCACTGATATTATACCACTTACCAATGTTTTGGAAATACTTGATA
TCGAATAATAATCTGGCTGAAAAGAGTATAAAAATTACAGCATTTACATT
TTCCATCATTTCAGGAACGTTGTACGTTGATGGAGATATTGCAGCTGTCG
GTGAATCAAAACCAGGAGCATCTGCTGTCAACAACATTAACAAAGTCTAC
TTTGGTGGATTGCCCTCCACTTCGCTTGTCATCCCTAAAACTCCGGTAAG
TTCCGAATCGTCAACTTTTAGTTTTAAACATTCATACCAGCAAAATCATT
CCAAGATTTCCATTATCCAACGACCTCCATTACATCATATTAGAAGCGTT
AAATTGTCTTGTAGGGGTTTCAATCAGTTTGCAATGAATCATAGGAATGA
GCTCTAACAATAGCTCCCGGTTCACCAGACATTATAAAAGTCTATTGGAC
GTGCGGTGTTCCTGGCTTCCCACAATGCATTGGAGCAGTGAAGCAGCTTA
TGTCTANTGGTATACggcgagccgtttttccattgttttcaagacactgt
ttttccatctctttacatttcTCTGTTTGATTAGGATCTAGACTAAATAG
AAGCTAACCGTCTTCGTTCCAGAACAacacaaatacataaactcgataTT
ACCACTGATAATATACCACTTACCAATGTTTTGGGAATACTTGATATCGA
ATAATAATCTGGCTGAAAAGAGTATAAAAATTACAGCATTTACATTTTCC
ATCATTTCAGGAACGTTGTACGTTGATGGAGATATTGCAGCTGTCGGTGA
ATCAAAACCAGGAGCGTCTGCTGTCAACAACATTAACAAAGTCTACTTTG
GTGGATTGCCCTCCACTTCGCTTGTCATCCCTAAAACTCCGGTAAGTTCC
GAATCGTCAACTTTTAGTTTTAAACATTCATACCAGCAAAATCATTCCAA
GATTTCCATTATCCAACGACCTCCATTACATCATATTAGAAGCGTTAAAT
TGTCTTGTAGGGGTTTCAATCAGTTTGCAATGAATCATAGGAATGAGCTC
TAACAATAGCTCCCGGTTCACTAGACATTATAAAAGTCTATTGGACGTGC
GGTGTTCCTGGCTTCCCACAATGCATTGGAGCAGTGAAGTAGCTTATGTC
TACCACATTATCGAAATTCGAAAAATCCCTTAACAAGATATATTGGTTGT
CAATGTCAATTAACTTTTGTGTCGTGCAAAAATTAACGAATCTCTTTTTT
CTTGTCCACAGAAAACATCTCAAATTCCACTGAAAGGAGGAATGAAGGAC
TTTAAACTTTTCAACGAAGCTCTGGTCACGCCTGCTGCTAGTGTTGGAAC
GTCACCAGCGTACAACGGATTGCCATATGTTAACGCTGTCTCCTTTGGTG
CCAATGGTGGATTTGCCCAGAAATTCAGTAAGTTTGAATTTATTTACAAT
ATACTCTTGAAAGTACTCAATATGTTTAGAAACTCAACAATAGGGGATAT
ACTCTTTTTGTCCGCTTAAGACGTTTTCTGTTTTAGACAACAAATCTTTA
GAAAACCTCCTCGAAAATCATTCTTCTATCGCCTTTTAGTTCGATTAATT
CATTGTTTTATCCCTCATAATATCATTTACTCTCCattcttgaatttttg
aaataatttgcaTCTTTCTTATCAGAGCAATTGAAAATCGGACAAAATTT
CAAGATCTCATTCGACGTCCGTGCGGCTAACAAAGCCGGCTCCCTCTTTT
ACGTGTACGGAGGAGGTGATCATTTGTCCGTCACCGTCGAAGAAAACGGT
TCGATCAAGGTGACGTGTAACAACGGTGGAGGGTTGTTCTCCGTGGCGTA
CAAACCGGAACCTTCCGTTTGCAACGGTGATATTTACAGTGTGCTTGtgg
agaagaaaatgaaaacattaaaattgACAGTCAATGGTGCCGTGACCGAA
GAAACGACCACCAAATCAAGCACGTCTGCTGACACCAACTCGCCCGCTTA
CTTTGGTGGACTTCCAGACAATTTGAGATCAAACTGGTCCAAGATTTCTG
ACAGTAAGTTTTTCAGACCCTTCATAAAATTTGTCTTCTCCGTTCGTAAC
GTCCCTTCTACTAGATGATGCTATCGTCTGTTACAaggatagtaaaggcg
ggaagaTGTGAATGCGCAGACTTTACAGCCATTTctgcggtatacggaaa
aagtCGGCGCTAGAGCTTCGAAGAAAGACAGTCAAACTCTAGCGGCTGTA
AACTATTtatggcaaaaaaaaacatatatttgTGAATTTTCTTCGACTTT
gagcttatttcttagatagtgatttgtcttagactatagcatagccTACC
CTCCTACTATCTTCCTATCTGCCTTGTTTTAAAACAGAAACTTGATTCAT
TTTCTCAACCTATATCCTTGCTTCATTCTTAGGCAAAGACTACAAGCCCT
TCGAAGGTTGTATCAGCAAAGTGGAAATTAATGACGAAGCTATCGACTTC
acaagtgacgtcatcaaaaatggcGCCGTCATGACGGGATGTCCTGAATG
AACAAGAATGATGGAAAAATTTTGActtgttacaattttttttacaattt
tttagattatttttcatatttacttAGActaccttttttgaaaatatagc
aCAGTGGAAGCACAATTATACCTGGCTTCGCTAAAACAATTTATCTTTTC
AGTGTACTTCAAACGCATGAATAAAATAAGTGTTTCGATCTAAAGTCGTC
AATTTTTCCGACTGAATAAAATTTAAAGGgtagagttttttattttttcg
ctgtGCTATACATTTATACATTTATTATTATCtctattttcagtttttcc
gTCTTTCTATAAACTGGTTTGCTCTCCAAACGAACAGGTGTCGATACCTT
TTACGCCGCCCCTCCGCCCCTCCGCCCCTAAACAATATTCTATGTAAAAA
ATCTGTATTGGTATAAAAAGCAtagaaaatgacttttttcaaacttcttc
tTAGTACCTTagaccatagaggtataaagaNCATTTctgcggtatacgga
aaaagtCGGCGCTAGAGCTTCGAAGAAAGACAGTCAAACTCTAGCGGCTG
TAAACTATTTAtggcaaaaaaacatatatttGTGAATTTTCTTCGACTTT
gagcttatttcttagatagtgattttgTCTCAGACTATAGCATAGCCTAC
CCTCCTACTATCTTCCTATCTGCCTTGTTTTAAAACAGAAACTTGATTCA
TCATTTTCTCAACCTATATCCTTGCTTCATTCTTAGGCAAAGACTACAAG
CCCTTCGAAGGTTGTATCAGCAAAGTGGAAATTAATGACGAAGCTATCGA
CTTCacaagtgacgtcatcaaaaatggcGCCGTCATGACGGGATGTCCTG
AATGAACAAGAATGATGGAAAAATTTTGActtgttacaattttttttaca
attttttagattatttttcatatttacttagattaccttttttgaaaata
tagcaCAGCGGAAGCACAACTATACCTGGCTTCGCtaaaacaatttattt
tttcagtgTACTTCAAACGCAGGAATAAAATAAGTGTTTCGATTTAAAGT
CGTCAATTTTTCCGACTGAATAAAATTTAAAGGgcagagttttttatttt
ttcgctgtGCTATACATTTATACATTTATTATTATCtctattttcagttt
ttccgTCTTTCTATAAACTGGTATGCTCTCCAAACGAACAGGTGTCGATA
CCTTTTACGCCGCCCCTCCGCCCCTAAACAATATGCTATGTAAAAAATCT
GTATTGGTATAAAAAGCAtagaaaatgacttttttcaaacttcttctTAG
TACCTTagaccatagaggtataaagaaNACATGCTTAGACCTAATACCTT
TGCAAATTTTTACTTACAAAGCATATCAGTATTTTCATTGGAACAACTTA
TTTTCAACAaggttttcgatttttttttcagccgaTGGAAAGGAGATCAT
TAGAATTTTGCCATGAAAGCTAATTTTTCGAGAAATAAGTTGTTTCCTTT
TTACaccttttagcaaaaaaaaaacccgcaaaattatttttgttgatgAA
TTTATGCAGTTATTGTAAACAGTTTTTTTAACatctttttgtttattctg
aaaaattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040667XLOC_040667Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064838-exon-scaffold_425-1491911889:72563..72779TCONS_00064838-exon-scaffold_425-1491911889:72563..72779Clytia hemisphaericaexon
TCONS_00064838-exon-scaffold_425-1510915933:72563..72779TCONS_00064838-exon-scaffold_425-1510915933:72563..72779Clytia hemisphaericaexon
TCONS_00064838-exon-scaffold_425-1575043694:72563..72779TCONS_00064838-exon-scaffold_425-1575043694:72563..72779Clytia hemisphaericaexon
TCONS_00064838-exon-scaffold_425-1491911889:73777..73907TCONS_00064838-exon-scaffold_425-1491911889:73777..73907Clytia hemisphaericaexon
TCONS_00064838-exon-scaffold_425-1510915933:73777..73907TCONS_00064838-exon-scaffold_425-1510915933:73777..73907Clytia hemisphaericaexon
TCONS_00064838-exon-scaffold_425-1575043694:73777..73907TCONS_00064838-exon-scaffold_425-1575043694:73777..73907Clytia hemisphaericaexon
TCONS_00064838-exon-scaffold_425-1491911889:74924..75089TCONS_00064838-exon-scaffold_425-1491911889:74924..75089Clytia hemisphaericaexon
TCONS_00064838-exon-scaffold_425-1510915933:74924..75089TCONS_00064838-exon-scaffold_425-1510915933:74924..75089Clytia hemisphaericaexon
TCONS_00064838-exon-scaffold_425-1575043694:74924..75089TCONS_00064838-exon-scaffold_425-1575043694:74924..75089Clytia hemisphaericaexon
TCONS_00064838-exon-scaffold_425-1491911889:75338..75715TCONS_00064838-exon-scaffold_425-1491911889:75338..75715Clytia hemisphaericaexon
TCONS_00064838-exon-scaffold_425-1510915933:75338..75715TCONS_00064838-exon-scaffold_425-1510915933:75338..75715Clytia hemisphaericaexon
TCONS_00064838-exon-scaffold_425-1575043694:75338..75715TCONS_00064838-exon-scaffold_425-1575043694:75338..75715Clytia hemisphaericaexon
TCONS_00064838-exon-scaffold_425-1491911889:76095..76118TCONS_00064838-exon-scaffold_425-1491911889:76095..76118Clytia hemisphaericaexon
TCONS_00064838-exon-scaffold_425-1510915933:76095..76118TCONS_00064838-exon-scaffold_425-1510915933:76095..76118Clytia hemisphaericaexon
TCONS_00064838-exon-scaffold_425-1575043694:76095..76118TCONS_00064838-exon-scaffold_425-1575043694:76095..76118Clytia hemisphaericaexon
TCONS_00064838-exon-scaffold_425-1491911889:76973..77820TCONS_00064838-exon-scaffold_425-1491911889:76973..77820Clytia hemisphaericaexon
TCONS_00064838-exon-scaffold_425-1510915933:76973..77820TCONS_00064838-exon-scaffold_425-1510915933:76973..77820Clytia hemisphaericaexon
TCONS_00064838-exon-scaffold_425-1575043694:76973..77820TCONS_00064838-exon-scaffold_425-1575043694:76973..77820Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_425supercontigscaffold_425:72563..77820 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.15671	0.163867	0.0838223	0.0895954	5.62917	3.89992	8.60716	10.6851	1.51674	4.44395	4.31217	1.48794	4.02762	3.37327	1.64355	2.3199	3.83582	4.43839	3.70658	2.5372	9.84549	9.87526	3.04865	4.22309	3.73708	4.42913	0.961368	1.31295	16.7664	20.0906
Blast
[Close]
BLAST of TCONS_00064838 vs. Swiss-Prot (Human)
Match: LAMA4 (Laminin subunit alpha-4 OS=Homo sapiens GN=LAMA4 PE=1 SV=4)

HSP 1 Score: 128.257 bits (321), Expect = 1.189e-30
Identity = 92/343 (26.82%), Postives = 162/343 (47.23%), Query Frame = 1 
Query:    1 ADYEFSFYTMEEEGLLMSGFMKSPYDYEAIYLAGGKAHYIFNAGAGSLTLSSKSTVNDGKWHTIKATRSKRAGTLYVDGDIAAVGESKPGASAVNNIN-KVYFGGLPSTSLVIP-KTPKTSQI----PLKGGMKDFKLFNEALVTPAASVGTSPAYNGLPYVNAVSFGANGGFAQKFKQLKIGQNFKISFDVRAANKAGSLFYVYG-GGDHLSVTVEENGSIKVTCNNGGGLFSVAYKPEPSVCNGDIYSVLVEKKMKTLKLTVNGAVXXXXXXXXXXXXXXXXPAYFGGLPDNLRSNWSKISDSKDYKPFEGCISKVEINDEAIDFTSDVIKNGAV-MTGCP 1005
            + +     T    G++     +   D+  ++LA G+  Y+FN G   L + S+   NDG WH +   R + +G L +DG +  + ES P   A   I   +Y GG      V P K  K  QI       G + + +L   ++ + + +   +P + G P      F   GG+    +   IG  F+I+F+VR  + +G+L + +   G++L+V + +NG + V  NNG   FS +  P+ S+C+G  + + V +    ++L V+  V       +    D   P + GG+P++L +   +++ S   KPF GCI    I+   + F+   + +GAV +  CP
Sbjct: 1493 SQFSIRLRTRSSHGMIFYVSDQEENDFMTLFLAHGRLVYMFNVGHKKLKIRSQEKYNDGLWHDVIFIRERSSGRLVIDG-LRVLEESLPPTEATWKIKGPIYLGG------VAPGKAVKNVQINSIYSFSGCLSNLQLNGASITSASQTFSVTPCFEG-PMETGTYFSTEGGYVVLDESFNIGLKFEIAFEVRPRSSSGTLVHGHSVNGEYLNVHM-KNGQVIVKVNNGIRDFSTSVTPKQSLCDGRWHRITVIRDSNVVQLDVDSEVNHVVGPLNPKPIDHREPVFVGGVPESLLT--PRLAPS---KPFTGCIRHFVIDGHPVSFSKAALVSGAVSINSCP 1821
The following BLAST results are available for this feature:
BLAST of TCONS_00064838 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LAMA41.189e-3026.82Laminin subunit alpha-4 OS=Homo sapiens GN=LAMA4 P... [more]
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