TCONS_00006398 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00006398
Unique Name	TCONS_00006398
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1490

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000067:165343..172531+

transcript sequence

>TCONS_00006398 ID=TCONS_00006398|Name=TCONS_00006398|organism=Clytia hemisphaerica|type=transcript|length=1490bp
ATTTTAAACAAGCAAAAAGACTGTATGAGCAAGGTGTAGGTGAATTAAGG
AATGCTATTGGAATCAAGCTCGAAGGTCAAGATGAAGAGGTTGGCAGAGG
AAGAAAGcttcaagaaaaaatgaaatccaacaTGTCCAACGCTCAATCCA
GGATTGCATTTCTAACTGTCAGGATTGAAGAAGGAGAActcgaaattgaa
aatgaaaagaagaaatccAATGACAAAACAAAAGTACAAACTACNaattg
aaaatgaaaagaagaaatccAATGACAAAACAAAAGTACCAACTAAAACA
GCTCCAAAGGAAACAAAGAAACCAGCTGGCCCAAGCAGGCCGACCAAGCC
AATCACTAAGAAATCAGTGCCAGGTCTAGGGCCATCATCCAGGAGCCATG
TGCCAGCCAAAAGGATCACTCCAGCGTCAACAACATCGATCAAAATGACA
CGAGGTCAACCATCAACAGGAACGCCCGGTGCCACCAAAGATGAGCACAA
GAAGAAACTTTCACATCTGAAGAATATCGATCGCAAATTTATTGATATGA
TTCTCAACGAAGCTGTTGAAGATGACCGTAAAGTTACATTCGACGATATT
GGTGGTATGGATTTGCCGAAAGAACTTTTAACAGAAATGGTCATTTTACC
ATCAGAAAGACCCGAGCTTTTCCAAGGGCTTCGTTCACCAGCCCGTGGTC
TGCTTCTCTTTGGTCCCCCTGGTAACGGGAAGACATTACTGGCAAAAGCA
CTAGCCTCTGAAGCAAAAGCAGTCTTTTTCAACATCAGTGCTGCTACTCT
CACTTCAAAATGGATTGGCGAGGGAGAGAAAACTGTCCGTGCATTGTTCG
CTGTTGCTCGAGAACTTCAACCGGCCATCATTTTCATCGacGAGATCGAC
TCGTTGTTAACAGCACGTAAAGAGAACGAACACGAAGCTTCCAGGAGAAT
GAAAACTGAATTCTTAACTTCCATGGATGGGATGAGTGCTGAGCAGGGCG
AACGAATTCTGGTGCTGGGCGCGACGAACGTCCCTTGGGAGCTGGATACT
GCTGCTCTCAGgcGACTACCAAAACGAGTGTACGCTCCACTACCTGATCA
TAATACGCGGAAAGATATTCTGAAAAAGACGATGCGAAAACAAAATAACG
TCCTTTCTGAAAAAGACTACGACAAAATTTCAAGTGCTGCAGAAGGTTAT
TCGGGCAGTGATTTGGCTGCTTTAGCGAGCGATGCGGCACAGCAACCAAT
ACGAGAATTAACACGCGAAGAACTGCGCTCCATCCCAGCTGATAAGGTTC
GAGGCGTAAAACTAGAAGACTTTTACAGCTCGTTGAAAAACGTTTCAAAG
AGTGTCTCAAGCGACCATCTTTCGAAATTCGTCGACTGGAACAAAGAATT
CGGTAGCAGTGGTTCATGACGTCATCCTGAGGTACAAGATGTATGACGTC
ATCCTGAGGTATggaatttatgacgtcattttgaggTATG

Run BLAST on NCBI

transcript from alignment at sc0000067:165343..172531+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00006398 ID=TCONS_00006398|Name=TCONS_00006398|organism=Clytia hemisphaerica|type=transcript|length=7189bp|location=Sequence derived from alignment at sc0000067:165343..172531+ (Clytia hemisphaerica)
ATTTTAAACAAGCAAAAAGACTGTATGAGCAAGGTGTAGGTGAATTAAGG
AATGCTATTGGAATCAAGCTCGAAGGTCAAGGTAAAAACACGAAATGTTG
TTATTTGATCTTACTAGTGGGTGGCCAAATTATTATATCTTTTCTAGGAC
ACAACcattcaaaaaatatatgtatATTTAGTCATTTGAGGTGAGGCTCT
GCTGCTATAAGGCCTggccaaaagttttttttggtcAAAGTCTGATGTTA
CATCAGAtgccatagtgtcctcccccctggattcaggggggaaTGGGTNT
TACATGATGGTCTTCATATACACTTGTTAAATTTGAGATGCTATGTTTGC
TAGATTTTCATGAGGTTTTTTCGGCAAgaaatttatttgaaagtcaattc
aattcaattcccCTCCTTTGGAATATATTCTGTACCATTCATTTTATTGT
CTCTTAGATGAAGAGGTTGGCAGAGGAAGAAAGcttcaagaaaaaatgaa
atccaacaTGTCCAACGCTCAATCCAGGATTGCATTTCTAAGTACAAACT
TAtctagttttatttttttcaaattccccGCTGTTTGTTTTACATTCGAA
CAATTGATATGCTTTAGAGGTTTTTGCATAAACACAATAATAGCGAGTAT
CTACACTTTTGAGGATGGTGgagtgactgaaacgatttggaaaaaccaag
GATAGTATAAGGGCTGATTCatcgtcgtcctcagtcagtcagcaTATGGA
AAAATCAAAAGCTGATTGACATTGCCACAGAAAAAAACGCATACATTTGA
ATGTAGCCCGACATTGGTTGAAGTTTTCAATAAAAGAAGGGTTCATTggt
ctttttctgattttacaCTCGCCTTATCAATTTCAGCTGTCAGGATTGAA
GAAGGAGAActcgaaattgaaaatgaaaagaagaaatccAATGACAAAAC
AAAAGTACAAACTACNaattgaaaatgaaaagaagaaatccAATGACAAA
ACAAAAGTACCAACTAAAACAGCTCCAAAGGAAACAAAGAAACCAGCTGG
CCCAAGCAGGCCGACCAAGCCAATCACTAAGAAATCAGTGCCAGGTCTAG
GGCCATCATCCAGGAGCCATGTGCCAGCCAAAAGGATCACTCCAGCGTCA
ACAACATCGATCAAAATGGTTTGTGGTCTTAGTTTGATACCTTTACGTAG
TTTCACAATATCTATAGTGTGGAAATCATTAAATATATTCAAGACTTTTT
GTTGAGCTAACATTAAAGTTATTAAGATTGAAGAAAACCCCTAAGGAAAC
TATAGGAATCAGTTTCTGTAATTGTGTTGTATACCCATCCACAGAAAGGG
GCTGATAAACATAAATCATTGAAAGCAAAGGAACAATTCTATTGAAATCT
CAGTTGAAATGTAGTTATTCATTGTGTGCATAACATCATATATATTTCTT
TTAACATACTTACACTATTCTCCAATCCAGGTGGATAAAACATCTGTTTC
TGTAGTATTGATGTGCACATTaatagaaaacatttttcagaTATTCTCAT
ATTCACAGTTTTATTAATatctttcaaaagttatttcGATATTACATCAC
CTCAGCCCATCACTTGTTGGCTGTTATCTGAGCACATCAGTTCCCAATGA
TAATGAATGATGAATGTCAATTTCTTTTGTAGACACGAGGTCAACCATCA
ACAGGAACGCCCGGTGCCACCAAAGATGAGCACAAGAAGAAACTTTCACA
TCTGAAGAATATCGATCGCAAATTTATTGATATGATTCTCAACGAAGCTG
TTGAAGAGTAAGTCAGAGGGAGGGACTCGGATTGAGTATTTCACACTATA
TCATTGGTCAAAATAAGTTCTTTTAGTCAAAGAAAGTTCGGGCTAGATCT
TATTGAGGCCCGAATGATGTCAAATAATTGAAGCAATTGTTGCATTGAGG
GCAGAATTACATCAGGTATGGATATTATTCAAACCTAGTATGtattgaac
ggtgaaaaagaatgcagcTATTataatttgattgattgatagcAGTAGTA
AGTATATTAGTAAGTTCGAACTTTCAGAAGGTAATATAAATGTATTGTTG
CTACAACTAAAATGTTTACTTTTGCTTATCATTGCAATTTTCTCCTTCGG
TGTTTATTTCAGTGACCGTAAAGTTACATTCGACGATATTGGTAtgttat
ttacaaattttctcaaaaaggaAATAATTCTGCCGCTCTTTTTAACAAGA
CCCAACGATTTTTACTTTCTAAGAGAAAAGTAAATCAAGTGAAATGTTTg
gcttaaatatttttttgggcttgtatcttaaaaaatttcagagctTTTAT
CATTGCCATTCTCTAACAAGACTGGAATTCTTTTCAGGTGGTATGGATTT
GCCGAAAGAACTTTTAACAGAAATGGTCATTTTACCATCAGAAAGACCCG
AGGTGAGcttaaaaaaatttgggttgttTTCTTAAATAGTCTTTGCTGCG
ATTGAttcaagaatttctttttagttcTTTTCAATAGTTCTTTTTACCTG
ATTTTACTCGTCAAGTATGAGGTCATGGCATGAACCAGACAGgagacaaa
caaaaaaattgttttttaacgaGTGTCATCGCTTTTCTTCATCAGCCATT
CTCTGTTTTTCTTTCCAGCTTTTCCAAGGGCTTCGTTCACCAGCCCGTGG
TCTGCTTCTCTTTGGTCCCCCTGGTAACGGGAAGACATTACTGGCAAAAG
CACTAGCCTCTGAAGCAAAAGCAGTCTTTTTCAACATCAGTGCTGCTACT
CTCACTTCAAAATGGGTAAGTTATTCGTTCATTTATGAATGCCTATAAAC
CAGCAAAAAAAGGGCTACGCCAATTtactgttttcttttttaaagctaat
ttttcattatttttttatacaaggtgtcttgaaaaaatgtgaaaatttaa
cgaaatgttttgattttttcctttttttaggaCACCCTGTATGACATGCA
GATAATATTGATGATACTTTATGATCACTATATTTTAGATTGGCGAGGGA
GAGAAAACTGTCCGTGCATTGTTCGCTGTTGCTCGAGAACTTCAACCGGC
CATCATTTTCATCGGTGAGTGCACACTATTGTAActatgatgaaaaatga
aataacttTTGGTTcgaaaaccaaaaaaataataacttgaaaaaaataac
cgTAGATTTCCCAATGTTTGCCGTTAAAGAGTCTTACTGACTTATAataa
tacacacttttttataagaatatttatgatgaaatcgGTCTTAAAATTAA
GGATATGGTAAGAATACCACCATCgtggaatttggcaactgaacctaaga
ataccatttttagagcattttcggTGTTTTGGGTCGAAAATTTCCAGGTG
GGATTTGAAAATGTTCAGGTTTCaggtgggagaaacaagttaaggtgggg
attaatttctttaggtgggatttttagtgttttgataaaagttaatgtta
gttttttcttatttccaaattaattataattttttctaaattttatagTC
TGTAAATACTTCTTTTACTATACTAAACTTTCctcctttttattattata
ctGTAGGAATTTTTGTTTCGTTCCTCGAAAtagtataatttttttgtggG
GATAGCATTTTTAGCTGAGATCTGGGAGTCTGGACTGAGGGTGGGAATTT
AAGGGCTAGGTAGGACCTGAATTTTTAGATGGGACCTGAAACCCCCTTGC
ATACTATGGAATATTTCAGCATAATTTTCctcaataagtaatagttatca
cacGAGTGGGAtaggctcggaaaatatgacgaaaagtctgaattcgaaaa
atatatccaacattgataactggtttatcgtcaatttgaaaaatataaaa
aaaagtgaccctgaatgggactgaaattccaaaatttcctcaaactttct
acttttccccccaaattttccaaaaaaaggcaccctacgagggactgatc
tttcattttggtgtttttgcgaccctacctgggacttctggaggttaaaa
aaggtaccctgaccagcggcgtattcccgtaacccattttgccctagtat
ttatgtacacgtttttagccaatcagattgctcatatttttcattttgat
gatAAGTTAAGACTATTcataatgaattgaaaaaacaccattcttaaaaa
aaaagcggcaattatattttgaattttgttttttttacagacGAGATCGA
CTCGTTGTTAACAGCACGTAAAGAGAACGAACACGAAGCTTCCAGGAGAA
TGAAAACTGAATTCTTAACTTCCATGGATGGGGTAAGTTTGCTTCCTTCA
GATCTTTTAATAAAGAAGCTTTAAAAGTCTTCTCTAGACTAACAGACAGT
GTACCATAGATGGttttaataagaatatattCTTTCTGGTGTCAAATTGA
TGACGTAAAACACGAGAAAAAACTCGTAAATTGTTAAAATTAGCTCGTAA
AATATTTTGTGTAACATTTCGTGTGGTATTACGAACATTTATCTAAACGT
TTGCTCCATCAAGTAAATTGGGTATAATTTGTACAACTTTTTTGAGAATG
ATTGCAACatgcaaaagattttttcaaattttcaaatttgccAAGCATTT
ACCCCGGCAGTTAAAAAACGTAATAAAAATTTCGGTCCTAAAAGATACAA
ATTTAGTAGGTAGCTAGTTACctcctttgatttttttcaatggNTAAAAG
ATACAAATTTAGTAGGTAGCTAGTTACCtccttagattttttttcattga
taATTTTGTTTAGATGAGTGCTGAGCAGGGCGAACGAATTCTGGTGCTGG
GCGCGACGAACGTCCCTTGGGAGCTGGATACTGCTGCTCTCAGGTAAGGG
GGTCATAAAGATGTTTAAAAACACATAAAGTCTTTGACTCTTTCTTTTCT
GACCCCCAATCTAGAGATGAGATCCTTGATTTACTTAAGACAAAAGTCAG
ATTTTATTTACCATTTCGAATTTAAACCAAGCTGATGACAGCATCTTGGC
TCTCTAAGTACAAGCTGCtcgaaaattttcaatcatattcTGGTTCTTTT
GGATGTCTGTTATAGCTgttaaattttaagattttaatctGATAAAGTCA
CTACACACTACAgtatcatttttttgtttcaggcGACTACCAAAACGAGT
GTACGCTCCACTACCTGATCATAATGTAAGAAGACGTCATTTTCCTTTGC
TGTTTATCGTCTTATCTTGGATAATTTCTTTTCAACAAATAAAACCCAAT
TTTTTCACTTCTCAATATTTATAGTAATGCATATGTATTTTTGCGAATAT
CGCTTGAATTATTCAATACTTACATTCGTTGTTAGCTTCTCACTTTTTCT
TTGCGGATTTCTGTATAAGAAACAATTACCTTTTATCGGTAGAAATTTTG
TCGGTGAAAAGTTTCGTCGGTAAAATATTTCGTCATTAAGCgattttttc
gtcactttttaccGTCTTTCTTTTGCCCATTTCTATGATGAAAACATTCC
TTCATTTTTTAGACGCGGAAAGATATTCTGAAAAAGACGATGCGAAAACA
AAATAACGTCCTTTCTGAAAAAGACTACGACAAAATTTCAAGGTATAGTG
AACTATGAGTTACTACAGACCCTCCCTTACTCTGTAAAGAATATAATGCC
GAGAATGACTACTTTTCTTTATTGatcaaaatctaaaatctttgatttta
tcTTCCAGTGCTGCAGAAGGTTATTCGGGCAGTGATTTGGCTGCTTTAGC
GAGCGATGCGGCACAGCAACCAATACGAGGTGATTAAACTTTATCTATAA
ATCTCAGTAGTTTTTGTCAAGGTTCTGATTAAATGTGCTATCCATTTCAA
TGTgagaaataataataaaagaaacaagattacttattacacgaatatta
ctaggcaagtattcaacggccttgaaatcaACACTctaaaaattaacacg
aattttatagctttttcaaggacaccatgaccggttttaattaagggggt
ttctattaacacgaaatttttcaattcgtgttaataaaatgactagtaat
gtTCGtgtaatacatgttttttttataagcataacgtttataagcatacc
gagacctgaatttgtctaaaaaataagcatattacaagcatattactgag
cttgcttttgaggtgtgtaagtgaaaattttaaacgCGGTAATCGTTCAC
AACTTTCCTGAAAAATCTTTGTGTCATTAACTATTTCCCTATCCTCATGT
ATAGCAGCaacagattttggaaaaaattgaagactcaaatttttcggaaa
aataagcatatgataAACATAATTCGAGCCTGAGTCTAAAATATCTCTAA
GCATACCTGAGCTTGTTTCCCAAaaaacatatgcttataaaaagaaaaac
atgtaaggTAGTTACCGTTTTACCTTAATTTTGCTTCATTACTGAGGTTG
TTTTGCCTACATCTGAACTACTGTATTATCTACTGATAAACGGCTCTAAA
TATGTCTTTTTGGGGCCACACCGCATATGTCGTTAAATggtattttgacg
ttttttttgtAGAATTAACACGCGAAGAACTGCGCTCCATCCCAGCTGAT
AAGGTACCTTTAGAAGACTTTCTTTTAGTGAATGATATCATGACCGTTTT
ACGATGACAAAATAAATATTAGAAGATATTTGAGGGTGACTGGAGAAATG
CAACCTTTCTGGAGAAACCTTTCGTCCGGTGTTCTTATTCTCAATCAAGc
cttcatttttttgaaaaagtcatctctcaaattttgatattataaTCATA
GAACATGTTAGATTTCTCCTCCTTTGAAATGGACATATTTTTAGATCAAC
TTATATAATTTTGCGAATGTATAATgcgtaaaaaaatttgatttgtgTGT
GActaattttgaacatttttgatcATAAAACTGTATATTTGTCAGGTTCG
AGGCGTAAAACTAGAAGACTTTTACAGCTCGTTGAAAAACGTTTCAAAGA
GTGTCTCAAGCGACCATCTTTCGAAATTCGTCGACTGGAACAAAGAATTC
GGTAGCAGTGGTTCATGACGTCATCCTGAGGTACAAGATGTATGACGTCA
TCCTGAGGTATggaatttatgacgtcattttgaggTATG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003654	XLOC_003654	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000067	supercontig	sc0000067:165343..172531 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	4.38801e-07	6.19707e-10	2.54532	0.792545	0.65806	0.000147676	2.77528	2.92922	1.30499	4.44418	3.28969	4.01307	1.48995	0.496508	8.55246	2.56851	3.09048	3.37517	0	0	0	6.43745e-08	5.17957	0.497583	0	0	0.0297155	0

Blast

[Close]

BLAST of TCONS_00006398 vs. Swiss-Prot (Human)
Match: SPAST (Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 9.804e-97
Identity = 187/346 (54.05%), Postives = 246/346 (71.10%), Query Frame = 1

Query:  373 GLGPSSRSHVPAKRITPASTTSIKMTRGQPSTGTPGATKDEHKKKLSHLKNIDRKFIDMILNEAVEDDRKVTFDDIGGMDLPKELLTEMVILPSERPELFQGLRSPARGLLLFGPPGNGXXXXXXXXXXXXXXVFFNISAATLTSKWIGEGEKTVRALFAVARELQPAIIFIDEIDSLLTARKENEHEASRRMKTEFLTSMDGMSAEQGERILVLGATNVPWELDTAALRRLPKRVYAPLPDHNTRKDILKKTMRKQNNVLSEKDYDKISSAAEGYSGXXXXXXXXXXXXXPIRELTREELRSIPADKVRGVKLEDFYXXXXXXXXXXXXDHLSKFVDWNKEFGSS 1410
            G GP+  +H    + TP +  + K     PST T   T    KK L + +N+D    ++I+NE V++   V FDDI G DL K+ L E+VILPS RPELF GLR+PARGLLLFGPPGNGKT+LAKA+A+E+ A FFNISAA+LTSK++GEGEK VRALFAVARELQP+IIFIDE+DSLL  R+E EH+ASRR+KTEFL   DG+ +   +R+LV+GATN P ELD A LRR  KRVY  LP+  TR  +LK  + KQ + L++K+  +++   +GYSGSDL ALA DAA  PIREL  E+++++ A ++R ++L DF  SLK + +SVS   L  ++ WNK+FG +
Sbjct:  281 GSGPAPTTH----KGTPKTNRTNK-----PSTPT---TATRKKKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDT 614

The following BLAST results are available for this feature:

BLAST of TCONS_00006398 vs. Swiss-Prot (Human)

BLAST of TCONS_00006398 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SPAST	9.804e-97	54.05	Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1	[more]

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TCONS_00006398 (transcript) - C. hemisphaerica