TCONS_00006396 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006396
Unique NameTCONS_00006396
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2112

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006396 ID=TCONS_00006396|Name=TCONS_00006396|organism=Clytia hemisphaerica|type=transcript|length=2112bp
CCCATGtctagcaaaatatttttttaccaaaCTGCAAAGCTCTGCAACTT
TTTCTTCACAACTTGTCCTCAACTGTACACATAGCAGAGATGGCTGAGAG
GAAAGAAGACCCAAAAACAAacgaaaatgtacaaaaagttcGAAAACATG
CAAAAATTGGGGCAAAATATATCAATGATGCAATGGGAATTGAAGAAAAA
GGAGaTGAATGTATTTTACCAGATTTTAAACAAGCAAAAAGACTGTATGA
GCAAGGTGTAGGTGAATTAAGGAATGCTATTGGAATCAAGCTCGAAGGTC
AAGATGAAGAGGTTGGCAGAGGAAGAAAGcttcaagaaaaaatgaaatcc
aacaTGTCCAACGCTCAATCCAGGATTGCATTTCTAACTGTCAGGATTGA
AGAAGGAGAActcgaaattgaaaatgaaaagaagaaatccAATGACAAAA
CAAAAGTACAAACTACNaattgaaaatgaaaagaagaaatccAATGACAA
AACAAAAGTACCAACTAAAACAGCTCCAAAGGAAACAAAGAAACCAGCTG
GCCCAAGCAGGCCGACCAAGCCAATCACTAAGAAATCAGTGCCAGGTCTA
GGGCCATCATCCAGGAGCCATGTGCCAGCCAAAAGGATCACTCCAGCGTC
AACAACATCGATCAAAATGACACGAGGTCAACCATCAACAGGAACGCCCG
GTGCCACCAAAGATGAGCACAAGAAGAAACTTTCACATCTGAAGAATATC
GATCGCAAATTTATTGATATGATTCTCAACGAAGCTGTTGAAGATGACCG
TAAAGTTACATTCGACGATATTGGTGGTATGGATTTGCCGAAAGAACTTT
TAACAGAAATGGTCATTTTACCATCAGAAAGACCCGAGCTTTTCCAAGGG
CTTCGTTCACCAGCCCGTGGTCTGCTTCTCTTTGGTCCCCCTGGTAACGG
GAAGACATTACTGGCAAAAGCACTAGCCTCTGAAGCAAAAGCAGTCTTTT
TCAACATCAGTGCTGCTACTCTCACTTCAAAATGGATTGGCGAGGGAGAG
AAAACTGTCCGTGCATTGTTCGCTGTTGCTCGAGAACTTCAACCGGCCAT
CATTTTCATCGacGAGATCGACTCGTTGTTAACAGCACGTAAAGAGAACG
AACACGAAGCTTCCAGGAGAATGAAAACTGAATTCTTAACTTCCATGGAT
GGGATGAGTGCTGAGCAGGGCGAACGAATTCTGGTGCTGGGCGCGACGAA
CGTCCCTTGGGAGCTGGATACTGCTGCTCTCAGgcGACTACCAAAACGAG
TGTACGCTCCACTACCTGATCATAATACGCGGAAAGATATTCTGAAAAAG
ACGATGCGAAAACAAAATAACGTCCTTTCTGAAAAAGACTACGACAAAAT
TTCAAGTGCTGCAGAAGGTTATTCGGGCAGTGATTTGGCTGCTTTAGCGA
GCGATGCGGCACAGCAACCAATACGAGAATTAACACGCGAAGAACTGCGC
TCCATCCCAGCTGATAAGGTTCGAGGCGTAAAACTAGAAGACTTTTACAG
CTCGTTGAAAAACGTTTCAAAAAGTGTCTCAAGCGACCATCTTTCGAAAT
TCGTCGACTGGAACAAAGAATTCGGTAGCAGTGGTTCATGACGTCATCCT
GAGGTACAAGATGTATGACGTCATCCTGAGGTATggaatttatgacgtca
ttttgaggTATGATATGTGTGGCGTCATTGTGTGTATGAGGAGGCGTGTT
TTGTATTGTAACATTGATACAGAATTGACGCACAAAATGAGGTCGAGTAA
AAACTACCCTGCGCATGTTATAAGAACTCAACGAAATGAACAATCACAAA
ACAATGAACAATCACAAAACAATGAAATCCATATTTCTAGATATTTTTAT
GCAAAAACTTAGCgagtctttaattttttttcaaaacatagcAAGTCTTC
ATTTCATACGCGAATTATACTTCTCAAGGCTAGATTATTATTATTCCGAT
TTTGTTTTGTACTCCTAATCCTTTTATGAGATTAAGTATCCATTCTGACA
CTACAGGAAAACAcgcttttttggacctaccccggtggaggtcctataaa
ttaacctttgtc
Run BLAST on NCBI

transcript from alignment at sc0000067:160463..175057+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006396 ID=TCONS_00006396|Name=TCONS_00006396|organism=Clytia hemisphaerica|type=transcript|length=14595bp|location=Sequence derived from alignment at sc0000067:160463..175057+ (Clytia hemisphaerica)
CCCATGtctagcaaaatatttttttaccaaaCTGCAAAGCTCTGCAACTT
TTTCTTCACAACTTGTCCTCAACTGTACACATAGGTATGTATATGATTTT
TCCATACTGTCTATCCTCTAGTGCAGTCTTTTATTGCTATGAATTGCTTA
TTTTAGGGCTATTTTTGATCatgttcaaaaatagtgtgacatttactgaa
ctcaaaaatatagtatttcttgaataacttgaaaaatatttcaaatataa
cgTTGAAATTTTATATGATGATCGGTATTTACACAAAGAACATATTTNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGAAA
AAATAAACGGTTAGCcaccaaaaatactcattttattaacataattgtca
gccaactttgaaaatgtcacaaaacaggcctttatttttgaacacgATCT
TTTATAATATAATGCcagttttcagagcatgtcatTGGTTGCCCCAAGGA
AAATTTATAACATAAAACTTCGCTCCTAAGATCCGTTTCCCACCACAAAA
AAGCCAGAAAAACAGGTTAATATAGCcagttttcaatgattttgccCCTG
CTGAACTGGTCTGAACTGTAACGtgagttggtctaatctcgacatacgtc
ttccaatctcgacaccggatctgtaaaataatcaaaacaaaccttgaatg
aaattcttggtatcattcttatcgaacaagttcatccatcaaactagaag
ttcagtaaacattgcaatcctttcaattaaaaaaacagccaaattatata
aagcagttttacacaaaacacgaaacgcatgcaaacttccttgtaacttt
ctcgtgtccatcattaaaattttacaacaagtcacatgataaaaataatt
tgcgcgcttagtcgacctggtttccatttccttattatttattgcaagca
cacgctctaggcgctagaAGGCTGCGTTAAACTTCTAGAcgccgcaccta
gcacacccagtcccttttcaaattcataaggaaaccgggttcttttaatt
attttcggtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNAGAgagagagtacaatttagtgattgattgataactttggtatgtatt
tgtttatgtttgattttttatttcgaagaccagcctacagctatgtcgag
attggaAGAGGTATGTCGAGATTAGGCGATCCTACAGTAGATATTATTAC
CCGTGATATTATTATTACCCACTTAAAGCGCCCCCCAAACCCCCAGCTCG
ATTTTTCTCCCTCGCTCCATTCGCTCGTTGTCCCGCATTTCCATTCTCAT
AAGTTGGCAACTATGttatattttgactgaattcTGACATCTAGGTACTA
TGGTTTGAGATCATAATAGTCTCATTATCAAACAAGGCACCTTATCTCTA
AAAAATGTGTCCCATATTTACCCCGTAGTCAAATCTTAATTTTAGGGTAA
TTATAGGACACTAAAGTTTGAGTTTGAagtgattattttttaaaagaaaa
ctacaaacttgattttctaGTTAAATGGAATCATAACTACACTCTAAGTC
TTTCAAAACCTGCAATGGTTTGCATCTAAATTTACTCCAGTTGGTCTAGA
TTGCTCTATACAAATATTACTGTTTGAAGTGTCCCGTTATTACCCCCAAA
TGGGAAAAACTGGGATAAAAATGGGACACTGTCAGGCCGACCCTAAAAAT
TTTttcgtttccggtccaccgggtgacgaaaaaaaaagtgATGCGGGCGG
Ccgggaaagatttttttttggtcctttctaatagaaaaaattaggaagaa
aaaaattcatctctCTGGCTGTTAGTGTTAAAGAAAGTATATTGCCACAC
ATTCTGTcccctttttttctctttcactGAAAGAAATCTGTTGTTATTAA
TTACAAAAAGCTGATTGAGTGTTGAATGAGTTTATTAGTTGTGCTTACTT
TGTgatctttttttctaagaatcaaCAAACCTTTCATTCTAATAAATTCA
TTTAATATGCATAAcattatttatttgatctttaacgTTCCGAAAGCCTC
CTAgacaaacaaatattttcttcactcatttaaatatgcataacactatt
tatttgatctttaatATCCAGAAAGCATGCTAAACAAACAAACCTTTTTG
AAGAGTGCAAGTGTTATAAAGCAACGATGTAacagcccagctggcacaca
acattgtttcaacgtccatctaacattcataacgtctttttaacgtNGTG
CCAGCTGGGAGTTTAAATGAGTAAAGGTTTTTAAGAAGAAAGTTTCCTCT
GTTATCTatttggttcttatgaaaaaaaaatgcggccgggtgacgatgaa
aaatatttcacccggccggtgaaccggaaacttttttttttttaaggtcG
GCCTCAAtaaatttgttgaaagtcctttaaatgatagcacttggatttga
agtcatcaagtggatgcaaaacctcaaatatcatgaccttttggaaagat
atctggatttttcaataactttttataCCTGTCCATTATTTACCCCGAGG
GTGTCCTGTAATTACCCCAAAATGCAGGGTATCTACGGGACACCTTTGAA
ATACATTTTAGGAACATCtactaaatttcaagaaaaagtaataaatctTG
TGTAAAGGTCATACTTTTatgaataaaatatcaaaagattgAATTTAATG
TTTACAAGATTCTTGACAATATTCTTGTTTTTGAATTATGACattgcggt
tattaattttgttccATCTGACAAATCCATGTTtgtgagtgcactttatt
atttTGAGACCTTCCTTTTGATGACTCTTATTCTGGTTTCCATATTTGTT
ATGTTTTCATTCTTAGCAGCAGAGATGGCTGAGAGGAAAGAAGACCCAAA
AACAAacgaaaatgtacaaaaagttcGAAAACATGCAAAAATTGGGGCAA
AATATATCAATGATGCAATGGGAATTGAAGAAAAAGGAGGCAAGATTTTT
ATCAagaattttgctaaattttgaatttatctaTTAAGATTGTTAATCAT
TGATATTATAGACTAACTATAGACTTTTAAGTCCagctttatttttctta
tattttgtttttcagaTGAATGTATTTTACCAGATTTTAAACAAGCAAAA
AGACTGTATGAGCAAGGTGTAGGTGAATTAAGGAATGCTATTGGAATCAA
GCTCGAAGGTCAAGGTAAAAACACGAAATGTTGTTATTTGATCTTACTAG
TGGGTGGCCAAATTATTATATCTTTTCTAGGACACAACcattcaaaaaat
atatgtatATTTAGTCATTTGAGGTGAGGCTCTGCTGCTATAAGGCCTgg
ccaaaagttttttttggtcAAAGTCTGATGTTACATCAGAtgccatagtg
tcctcccccctggattcaggggggaatgggttttgaggtcaaaaggacgt
ataggggggaaagacttttttttgaagccaggggGGGGGAAAACGAgggg
ggatggaaaattttcattctaggcatgggggggaactcaccaaaatcaat
tcaaaattgaaaaacatctggttttatgagatgatatagcataatgctta
gttttattaatattatggtTTAAAAATAACCATCCTTTCCATACattctt
gaattagaactaccttagggaaaacaataagcgttaagttcatcaaatta
cagctttttaattttatgcttgagggggggggacagaaaattttttggag
gcagggtggggaaaaatgagggggggggaatggaaaattttcattctagg
catgagggggaagagaccctgaaggacactatggATGCAAAACTGAAGTC
AAAAGAGcaacaaaagatttttgaacTNAGATTTTAAACAAGCAAAAAGA
CTGTATGAGCAAGGTGTAGGTGAATTAAGGAATGCTATTGGAATCAAGCT
CGAAGGTCAAGGTAAAAACACGAAATGTTGTTATTTGATCTTACTAGTGG
GTGGCCAAATTATTATATCTTTTCTAGGACACAACcattcaaaaaatata
tgtatATTTAGTCATTTGAGGTGAGGCTCTGCTGCTATAAGGCCTggcca
aaagttttttttggtcAAAGTCTGATGTTACATCAGAtgccatagtgtcc
tcccccctggattcaggggggaaTGGGTNTTACATGATGGTCTTCATATA
CACTTGTTAAATTTGAGATGCTATGTTTGCTAGATTTTCATGAGGTTTTT
TCGGCAAgaaatttatttgaaagtcaattcaattcaattcccCTCCTTTG
GAATATATTCTGTACCATTCATTTTATTGTCTCTTAGATGAAGAGGTTGG
CAGAGGAAGAAAGcttcaagaaaaaatgaaatccaacaTGTCCAACGCTC
AATCCAGGATTGCATTTCTAAGTACAAACTTAtctagttttatttttttc
aaattccccGCTGTTTGTTTTACATTCGAACAATTGATATGCTTTAGAGG
TTTTTGCATAAACACAATAATAGCGAGTATCTACACTTTTGAGGATGGTG
gagtgactgaaacgatttggaaaaaccaagGATAGTATAAGGGCTGATTC
atcgtcgtcctcagtcagtcagcaTATGGAAAAATCAAAAGCTGATTGAC
ATTGCCACAGAAAAAAACGCATACATTTGAATGTAGCCCGACATTGGTTG
AAGTTTTCAATAAAAGAAGGGTTCATTggtctttttctgattttacaCTC
GCCTTATCAATTTCAGCTGTCAGGATTGAAGAAGGAGAActcgaaattga
aaatgaaaagaagaaatccAATGACAAAACAAAAGTACAAACTACNaatt
gaaaatgaaaagaagaaatccAATGACAAAACAAAAGTACCAACTAAAAC
AGCTCCAAAGGAAACAAAGAAACCAGCTGGCCCAAGCAGGCCGACCAAGC
CAATCACTAAGAAATCAGTGCCAGGTCTAGGGCCATCATCCAGGAGCCAT
GTGCCAGCCAAAAGGATCACTCCAGCGTCAACAACATCGATCAAAATGGT
TTGTGGTCTTAGTTTGATACCTTTACGTAGTTTCACAATATCTATAGTGT
GGAAATCATTAAATATATTCAAGACTTTTTGTTGAGCTAACATTAAAGTT
ATTAAGATTGAAGAAAACCCCTAAGGAAACTATAGGAATCAGTTTCTGTA
ATTGTGTTGTATACCCATCCACAGAAAGGGGCTGATAAACATAAATCATT
GAAAGCAAAGGAACAATTCTATTGAAATCTCAGTTGAAATGTAGTTATTC
ATTGTGTGCATAACATCATATATATTTCTTTTAACATACTTACACTATTC
TCCAATCCAGGTGGATAAAACATCTGTTTCTGTAGTATTGATGTGCACAT
TaatagaaaacatttttcagaTATTCTCATATTCACAGTTTTATTAATat
ctttcaaaagttatttcGATATTACATCACCTCAGCCCATCACTTGTTGG
CTGTTATCTGAGCACATCAGTTCCCAATGATAATGAATGATGAATGTCAA
TTTCTTTTGTAGACACGAGGTCAACCATCAACAGGAACGCCCGGTGCCAC
CAAAGATGAGCACAAGAAGAAACTTTCACATCTGAAGAATATCGATCGCA
AATTTATTGATATGATTCTCAACGAAGCTGTTGAAGAGTAAGTCAGAGGG
AGGGACTCGGATTGAGTATTTCACACTATATCATTGGTCAAAATAAGTTC
TTTTAGTCAAAGAAAGTTCGGGCTAGATCTTATTGAGGCCCGAATGATGT
CAAATAATTGAAGCAATTGTTGCATTGAGGGCAGAATTACATCAGGTATG
GATATTATTCAAACCTAGTATGtattgaacggtgaaaaagaatgcagcTA
TTataatttgattgattgatagcAGTAGTAAGTATATTAGTAAGTTCGAA
CTTTCAGAAGGTAATATAAATGTATTGTTGCTACAACTAAAATGTTTACT
TTTGCTTATCATTGCAATTTTCTCCTTCGGTGTTTATTTCAGTGACCGTA
AAGTTACATTCGACGATATTGGTAtgttatttacaaattttctcaaaaag
gaAATAATTCTGCCGCTCTTTTTAACAAGACCCAACGATTTTTACTTTCT
AAGAGAAAAGTAAATCAAGTGAAATGTTTggcttaaatatttttttgggc
ttgtatcttaaaaaatttcagagctTTTATCATTGCCATTCTCTAACAAG
ACTGGAATTCTTTTCAGGTGGTATGGATTTGCCGAAAGAACTTTTAACAG
AAATGGTCATTTTACCATCAGAAAGACCCGAGGTGAGcttaaaaaaattt
gggttgttTTCTTAAATAGTCTTTGCTGCGATTGAttcaagaatttcttt
ttagttcTTTTCAATAGTTCTTTTTACCTGATTTTACTCGTCAAGTATGA
GGTCATGGCATGAACCAGACAGgagacaaacaaaaaaattgttttttaac
gaGTGTCATCGCTTTTCTTCATCAGCCATTCTCTGTTTTTCTTTCCAGCT
TTTCCAAGGGCTTCGTTCACCAGCCCGTGGTCTGCTTCTCTTTGGTCCCC
CTGGTAACGGGAAGACATTACTGGCAAAAGCACTAGCCTCTGAAGCAAAA
GCAGTCTTTTTCAACATCAGTGCTGCTACTCTCACTTCAAAATGGGTAAG
TTATTCGTTCATTTATGAATGCCTATAAACCAGCAAAAAAAGGGCTACGC
CAATTtactgttttcttttttaaagctaatttttcattatttttttatac
aaggtgtcttgaaaaaatgtgaaaatttaacgaaatgttttgattttttc
ctttttttaggaCACCCTGTATGACATGCAGATAATATTGATGATACTTT
ATGATCACTATATTTTAGATTGGCGAGGGAGAGAAAACTGTCCGTGCATT
GTTCGCTGTTGCTCGAGAACTTCAACCGGCCATCATTTTCATCGGTGAGT
GCACACTATTGTAActatgatgaaaaatgaaataacttTTGGTTcgaaaa
ccaaaaaaataataacttgaaaaaaataaccgTAGATTTCCCAATGTTTG
CCGTTAAAGAGTCTTACTGACTTATAataatacacacttttttataagaa
tatttatgatgaaatcgGTCTTAAAATTAAGGATATGGTAAGAATACCAC
CATCgtggaatttggcaactgaacctaagaataccatttttagagcattt
tcggTGTTTTGGGTCGAAAATTTCCAGGTGGGATTTGAAAATGTTCAGGT
TTCaggtgggagaaacaagttaaggtggggattaatttctttaggtggga
tttttagtgttttgataaaagttaatgttagttttttcttatttccaaat
taattataattttttctaaattttatagTCTGTAAATACTTCTTTTACTA
TACTAAACTTTCctcctttttattattatactGTAGGAATTTTTGTTTCG
TTCCTCGAAAtagtataatttttttgtggGGATAGCATTTTTAGCTGAGA
TCTGGGAGTCTGGACTGAGGGTGGGAATTTAAGGGCTAGGTAGGACCTGA
ATTTTTAGATGGGACCTGAAACCCCCTTGCATACTATGGAATATTTCAGC
ATAATTTTCctcaataagtaatagttatcacacGAGTGGGAtaggctcgg
aaaatatgacgaaaagtctgaattcgaaaaatatatccaacattgataac
tggtttatcgtcaatttgaaaaatataaaaaaaagtgaccctgaatggga
ctgaaattccaaaatttcctcaaactttctacttttccccccaaattttc
caaaaaaaggcaccctacgagggactgatctttcattttggtgtttttgc
gaccctacctgggacttctggaggttaaaaaaggtaccctgaccagcggc
gtattcccgtaacccattttgccctagtatttatgtacacgtttttagcc
aatcagattgctcatatttttcattttgatgatAAGTTAAGACTATTcat
aatgaattgaaaaaacaccattcttaaaaaaaaagcggcaattatatttt
gaattttgttttttttacagacGAGATCGACTCGTTGTTAACAGCACGTA
AAGAGAACGAACACGAAGCTTCCAGGAGAATGAAAACTGAATTCTTAACT
TCCATGGATGGGGTAAGTTTGCTTCCTTCAGATCTTTTAATAAAGAAGCT
TTAAAAGTCTTCTCTAGACTAACAGACAGTGTACCATAGATGGttttaat
aagaatatattCTTTCTGGTGTCAAATTGATGACGTAAAACACGAGAAAA
AACTCGTAAATTGTTAAAATTAGCTCGTAAAATATTTTGTGTAACATTTC
GTGTGGTATTACGAACATTTATCTAAACGTTTGCTCCATCAAGTAAATTG
GGTATAATTTGTACAACTTTTTTGAGAATGATTGCAACatgcaaaagatt
ttttcaaattttcaaatttgccAAGCATTTACCCCGGCAGTTAAAAAACG
TAATAAAAATTTCGGTCCTAAAAGATACAAATTTAGTAGGTAGCTAGTTA
CctcctttgatttttttcaatggNTAAAAGATACAAATTTAGTAGGTAGC
TAGTTACCtccttagattttttttcattgataATTTTGTTTAGATGAGTG
CTGAGCAGGGCGAACGAATTCTGGTGCTGGGCGCGACGAACGTCCCTTGG
GAGCTGGATACTGCTGCTCTCAGGTAAGGGGGTCATAAAGATGTTTAAAA
ACACATAAAGTCTTTGACTCTTTCTTTTCTGACCCCCAATCTAGAGATGA
GATCCTTGATTTACTTAAGACAAAAGTCAGATTTTATTTACCATTTCGAA
TTTAAACCAAGCTGATGACAGCATCTTGGCTCTCTAAGTACAAGCTGCtc
gaaaattttcaatcatattcTGGTTCTTTTGGATGTCTGTTATAGCTgtt
aaattttaagattttaatctGATAAAGTCACTACACACTACAgtatcatt
tttttgtttcaggcGACTACCAAAACGAGTGTACGCTCCACTACCTGATC
ATAATGTAAGAAGACGTCATTTTCCTTTGCTGTTTATCGTCTTATCTTGG
ATAATTTCTTTTCAACAAATAAAACCCAATTTTTTCACTTCTCAATATTT
ATAGTAATGCATATGTATTTTTGCGAATATCGCTTGAATTATTCAATACT
TACATTCGTTGTTAGCTTCTCACTTTTTCTTTGCGGATTTCTGTATAAGA
AACAATTACCTTTTATCGGTAGAAATTTTGTCGGTGAAAAGTTTCGTCGG
TAAAATATTTCGTCATTAAGCgattttttcgtcactttttaccGTCTTTC
TTTTGCCCATTTCTATGATGAAAACATTCCTTCATTTTTTAGACGCGGAA
AGATATTCTGAAAAAGACGATGCGAAAACAAAATAACGTCCTTTCTGAAA
AAGACTACGACAAAATTTCAAGGTATAGTGAACTATGAGTTACTACAGAC
CCTCCCTTACTCTGTAAAGAATATAATGCCGAGAATGACTACTTTTCTTT
ATTGatcaaaatctaaaatctttgattttatcTTCCAGTGCTGCAGAAGG
TTATTCGGGCAGTGATTTGGCTGCTTTAGCGAGCGATGCGGCACAGCAAC
CAATACGAGGTGATTAAACTTTATCTATAAATCTCAGTAGTTTTTGTCAA
GGTTCTGATTAAATGTGCTATCCATTTCAATGTgagaaataataataaaa
gaaacaagattacttattacacgaatattactaggcaagtattcaacggc
cttgaaatcaACACTctaaaaattaacacgaattttatagctttttcaag
gacaccatgaccggttttaattaagggggtttctattaacacgaaatttt
tcaattcgtgttaataaaatgactagtaatgtTCGtgtaatacatgtttt
ttttataagcataacgtttataagcataccgagacctgaatttgtctaaa
aaataagcatattacaagcatattactgagcttgcttttgaggtgtgtaa
gtgaaaattttaaacgCGGTAATCGTTCACAACTTTCCTGAAAAATCTTT
GTGTCATTAACTATTTCCCTATCCTCATGTATAGCAGCaacagattttgg
aaaaaattgaagactcaaatttttcggaaaaataagcatatgataAACAT
AATTCGAGCCTGAGTCTAAAATATCTCTAAGCATACCTGAGCTTGTTTCC
CAAaaaacatatgcttataaaaagaaaaacatgtaaggTAGTTACCGTTT
TACCTTAATTTTGCTTCATTACTGAGGTTGTTTTGCCTACATCTGAACTA
CTGTATTATCTACTGATAAACGGCTCTAAATATGTCTTTTTGGGGCCACA
CCGCATATGTCGTTAAATggtattttgacgttttttttgtAGAATTAACA
CGCGAAGAACTGCGCTCCATCCCAGCTGATAAGGTACCTTTAGAAGACTT
TCTTTTAGTGAATGATATCATGACCGTTTTACGATGACAAAATAAATATT
AGAAGATATTTGAGGGTGACTGGAGAAATGCAACCTTTCTGGAGAAACCT
TTCGTCCGGTGTTCTTATTCTCAATCAAGccttcatttttttgaaaaagt
catctctcaaattttgatattataaTCATAGAACATGTTAGATTTCTCCT
CCTTTGAAATGGACATATTTTTAGATCAACTTATATAATTTTGCGAATGT
ATAATgcgtaaaaaaatttgatttgtgTGTGActaattttgaacattttt
gatcATAAAACTGTATATTTGTCAGGTTCGAGGCGTAAAACTAGAAGACT
TTTACAGCTCGTTGAAAAACGTTTCAAAGAGTGTCTCAAGCGACCATCTT
TCGAAATTCGTCGACTGGAACAAAGAATTCGGTAGCAGTGGTTCATGACG
TCATCCTGAGGTACAAGATGTATGACGTCATCCTGAGGTATggaatttat
gacgtcattttgaggTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNttcgttcgttcgttcgttattagc
tttcctcatgattggctcgttagttttttctgattttttgcacaaagatg
cataactataaaccctctaaTGTGACGGAggccgattttcaaaaaaaaaa
attttgtgcaaatttgggccaaaaaacggctaaaaaacgggttttttgga
ctttgtgaaaaataaggtcgttaattttttctgattttttttgcatgaaa
gtagagtaccatcgtaggtaaaagatggcttaagcagatttttgcaaaaa
aattttgttggctcaaaaaacgcatgtttatatataagaatcactattat
aagcatacatcaatgttcatagtcaaattactcaatttttttatgaaata
tatgtttttttttgctcaggagggcttacttttaaagaatatgtgtgttt
cgacatgaaattttggttgcttggcgtgtttttataaaaaaactggccaa
attcgatatttttttataagcaaNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAAATAAATATTAGAAGATATTTGAGGGTGACTGGA
GAAATGCAACATTTCTGGAGAAACCTTTCGTCCGGTGTTCTTATTCTCAA
TCAAGccttcatttttttgaaaaagtcatctctcaaattttgatattata
aTCATAGAACATGTTAGATTTCTCCTCCTTTGAAATGGACATATTTTTAG
ATCAACTTATATAATTTTGCGAATGTATAATgcgtaaaaaaatttgattt
gtgtgtgactaattttgaaaatttttgatcatAAAACTGTATATTTGTCA
GGTTCGAGGCGTAAAACTAGAAGACTTTTACAGCTCGTTGAAAAACGTTT
CAAAAAGTGTCTCAAGCGACCATCTTTCGAAATTCGTCGACTGGAACAAA
GAATTCGGTAGCAGTGGTTCATGACGTCATCCTGAGGTACAAGATGTATG
ACGTCATCCTGAGGTATggaatttatgacgtcattttgaggTATGATATG
TGTGGCGTCATTGTGTGTATGAGGAGGCGTGTTTTGTATTGTAACATTGA
TACAGAATTGACGCACAAAATGAGGTCGAGTAAAAACTACCCTGCGCATG
TTATAAGAACTCAACGAAATGAACAATCACAAAACAATGAACAATCACAA
AACAATGAAATCCATATTTCTAGATATTTTTATGCAAAAACTTAGCgagt
ctttaattttttttcaaaacatagcAAGTCTTCATTTCATACGCGAATTA
TACTTCTCAAGGCTAGATTATTATTATTCCGATTTTGTTTTGTACTCCTA
ATCCTTTTATGAGATTAAGTATCCATTCTGACACTACAGGAAAACAcgct
tttttggacctaccccggtggaggtcctataaattaacctttgtc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003654XLOC_003654Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006396-exon-sc0000067-1491911889:160463..160546TCONS_00006396-exon-sc0000067-1491911889:160463..160546Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1510915933:160463..160546TCONS_00006396-exon-sc0000067-1510915933:160463..160546Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1575043694:160463..160546TCONS_00006396-exon-sc0000067-1575043694:160463..160546Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1491911889:164332..164451TCONS_00006396-exon-sc0000067-1491911889:164332..164451Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1510915933:164332..164451TCONS_00006396-exon-sc0000067-1510915933:164332..164451Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1575043694:164332..164451TCONS_00006396-exon-sc0000067-1575043694:164332..164451Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1491911889:164578..164676TCONS_00006396-exon-sc0000067-1491911889:164578..164676Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1510915933:164578..164676TCONS_00006396-exon-sc0000067-1510915933:164578..164676Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1575043694:164578..164676TCONS_00006396-exon-sc0000067-1575043694:164578..164676Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1491911889:165800..165883TCONS_00006396-exon-sc0000067-1491911889:165800..165883Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1510915933:165800..165883TCONS_00006396-exon-sc0000067-1510915933:165800..165883Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1575043694:165800..165883TCONS_00006396-exon-sc0000067-1575043694:165800..165883Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1491911889:166229..166510TCONS_00006396-exon-sc0000067-1491911889:166229..166510Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1510915933:166229..166510TCONS_00006396-exon-sc0000067-1510915933:166229..166510Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1575043694:166229..166510TCONS_00006396-exon-sc0000067-1575043694:166229..166510Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1491911889:167025..167149TCONS_00006396-exon-sc0000067-1491911889:167025..167149Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1510915933:167025..167149TCONS_00006396-exon-sc0000067-1510915933:167025..167149Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1575043694:167025..167149TCONS_00006396-exon-sc0000067-1575043694:167025..167149Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1491911889:167505..167533TCONS_00006396-exon-sc0000067-1491911889:167505..167533Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1510915933:167505..167533TCONS_00006396-exon-sc0000067-1510915933:167505..167533Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1575043694:167505..167533TCONS_00006396-exon-sc0000067-1575043694:167505..167533Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1491911889:167730..167794TCONS_00006396-exon-sc0000067-1491911889:167730..167794Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1510915933:167730..167794TCONS_00006396-exon-sc0000067-1510915933:167730..167794Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1575043694:167730..167794TCONS_00006396-exon-sc0000067-1575043694:167730..167794Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1491911889:168011..168157TCONS_00006396-exon-sc0000067-1491911889:168011..168157Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1510915933:168011..168157TCONS_00006396-exon-sc0000067-1510915933:168011..168157Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1575043694:168011..168157TCONS_00006396-exon-sc0000067-1575043694:168011..168157Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1491911889:168381..168456TCONS_00006396-exon-sc0000067-1491911889:168381..168456Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1510915933:168381..168456TCONS_00006396-exon-sc0000067-1510915933:168381..168456Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1575043694:168381..168456TCONS_00006396-exon-sc0000067-1575043694:168381..168456Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1491911889:169583..169674TCONS_00006396-exon-sc0000067-1491911889:169583..169674Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1510915933:169583..169674TCONS_00006396-exon-sc0000067-1510915933:169583..169674Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1575043694:169583..169674TCONS_00006396-exon-sc0000067-1575043694:169583..169674Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1491911889:170156..170235TCONS_00006396-exon-sc0000067-1491911889:170156..170235Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1510915933:170156..170235TCONS_00006396-exon-sc0000067-1510915933:170156..170235Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1575043694:170156..170235TCONS_00006396-exon-sc0000067-1575043694:170156..170235Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1491911889:170525..170567TCONS_00006396-exon-sc0000067-1491911889:170525..170567Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1510915933:170525..170567TCONS_00006396-exon-sc0000067-1510915933:170525..170567Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1575043694:170525..170567TCONS_00006396-exon-sc0000067-1575043694:170525..170567Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1491911889:170905..170984TCONS_00006396-exon-sc0000067-1491911889:170905..170984Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1510915933:170905..170984TCONS_00006396-exon-sc0000067-1510915933:170905..170984Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1575043694:170905..170984TCONS_00006396-exon-sc0000067-1575043694:170905..170984Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1491911889:171101..171171TCONS_00006396-exon-sc0000067-1491911889:171101..171171Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1510915933:171101..171171TCONS_00006396-exon-sc0000067-1510915933:171101..171171Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1575043694:171101..171171TCONS_00006396-exon-sc0000067-1575043694:171101..171171Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1491911889:171955..171995TCONS_00006396-exon-sc0000067-1491911889:171955..171995Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1510915933:171955..171995TCONS_00006396-exon-sc0000067-1510915933:171955..171995Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1575043694:171955..171995TCONS_00006396-exon-sc0000067-1575043694:171955..171995Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1491911889:174464..175057TCONS_00006396-exon-sc0000067-1491911889:174464..175057Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1510915933:174464..175057TCONS_00006396-exon-sc0000067-1510915933:174464..175057Clytia hemisphaericaexon
TCONS_00006396-exon-sc0000067-1575043694:174464..175057TCONS_00006396-exon-sc0000067-1575043694:174464..175057Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:160463..175057 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.81858e-06	1.3445	1.35962	7.23179e-06	4.0158	2.47813	4.77888	2.66685	0.000120981	2.01826	7.41398	0.281061	2.71584	0.0160302	0.624837	1.37166	0.324829	1.60145	0	0.554133	0.431091	0.687233	9.02483e-08	8.77917e-05	5.26562	9.73504	0	1.09064	0.000770896	9.69377e-09
Blast
[Close]
BLAST of TCONS_00006396 vs. Swiss-Prot (Human)
Match: SPAST (Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.514e-94
Identity = 187/346 (54.05%), Postives = 246/346 (71.10%), Query Frame = 1 
Query:  595 GLGPSSRSHVPAKRITPASTTSIKMTRGQPSTGTPGATKDEHKKKLSHLKNIDRKFIDMILNEAVEDDRKVTFDDIGGMDLPKELLTEMVILPSERPELFQGLRSPARGLLLFGPPGNGXXXXXXXXXXXXXXVFFNISAATLTSKWIGEGEKTVRALFAVARELQPAIIFIDEIDSLLTARKENEHEASRRMKTEFLTSMDGMSAEQGERILVLGATNVPWELDTAALRRLPKRVYAPLPDHNTRKDILKKTMRKQNNVLSEKDYDKISSAAEGYSGXXXXXXXXXXXXXPIRELTREELRSIPADKVRGVKLEDFYXXXXXXXXXXXXDHLSKFVDWNKEFGSS 1632
            G GP+  +H    + TP +  + K     PST T   T    KK L + +N+D    ++I+NE V++   V FDDI G DL K+ L E+VILPS RPELF GLR+PARGLLLFGPPGNGKT+LAKA+A+E+ A FFNISAA+LTSK++GEGEK VRALFAVARELQP+IIFIDE+DSLL  R+E EH+ASRR+KTEFL   DG+ +   +R+LV+GATN P ELD A LRR  KRVY  LP+  TR  +LK  + KQ + L++K+  +++   +GYSGSDL ALA DAA  PIREL  E+++++ A ++R ++L DF  SLK + +SVS   L  ++ WNK+FG +
Sbjct:  281 GSGPAPTTH----KGTPKTNRTNK-----PSTPT---TATRKKKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDT 614
The following BLAST results are available for this feature:
BLAST of TCONS_00006396 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPAST2.514e-9454.05Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1[more]
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