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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064742 ID=TCONS_00064742|Name=TCONS_00064742|organism=Clytia hemisphaerica|type=transcript|length=568bp tttgttttgatttacttttagGCACGGAGATAAATGCATCACATTTCAAA CCTGGACAATTTATCCATCTCCGAGGAACAACGATATACCAAGGATTTCA AGGTGTTATGAAACGCTGGGGAATGAAAGGGCAACCCAAAACTCACGGAC AGAGTAAAACACATCGTAAGATGGGCGCCACTGGAGGTGGACAGGATCCA GGGCGTATTTTCCCCGGCAAGAAGATGGCAGGAGTTGTGGGAGGGAAGAA TAGCACAACTCCTCCTTTAAAAATCTTTCGCATCAATACAAAATATAACA TCTTGTATATCAAAGGGCACGTCCCTGGAGAAGTAGGAGGGTTCCTACGC ATCCATGACAGTCGTTACAAGAAATATCCCAAACCTCCATATTTCCCAAC CATTGAAGAAAGCGAGATGGAATCTCTGGAAGAAGATCTATTCGAAGATC ACGTGGTTAGGCCGACTGACCTCTCACTAGAATTTCCGCCTTATAAActg taaattaatttttataaaatcttGTGTTTTTTTGTGTATTGAATCTGAGA AAATGTTGTAATCTGCTT Run BLAST on NCBI protein sequence of TCONS_00064742-protein >TCONS_00064742-protein ID=TCONS_00064742-protein|Name=TCONS_00064742-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
CFDLLLGTEINASHFKPGQFIHLRGTTIYQGFQGVMKRWGMKGQPKTHGQ SKTHRKMGATGGGQDPGRIFPGKKMAGVVGGKNSTTPPLKIFRINTKYNI LYIKGHVPGEVGGFLRIHDSRYKKYPKPPYFPTIEESEMESLEEDLFEDH VVRPTDLSLEFPPYKL Run BLAST on NCBI transcript from alignment at scaffold_423:253156..254762+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064742 ID=TCONS_00064742|Name=TCONS_00064742|organism=Clytia hemisphaerica|type=transcript|length=1607bp|location=Sequence derived from alignment at scaffold_423:253156..254762+ (Clytia hemisphaerica) tttgttttgatttacttttagGCACGGAGATAAATGCATCACATTTCAAA
CCTGGACAATTTATCCATCTCCGAGGAACAACGTATGTCACCATTAATTT
CTTAATTGGGATTCTGATCGGTCTTATGGACTTCTGTATTCATAACTTCC
AAAACCCATACTGTATCAAAATGATTCCATTTTGTACTTTTggaattttc
ttaaatttctcatcATTTCTTAAATTGTGACAATAAATAAGTCGAACTGT
GTGCTTTAATATTGGTCTACTAACCTTTCAGTTTCACATAATACTACATA
ATAATACTAAGTTAATAGCAGCAATTGATATTTTTCCTATTATTAACAGG
ATATACCAAGGATTTCAAGGTGTTATGAAACGCTGGGGAATGAAAGGGCA
ACCCAAAACTCACGGACAGAGTAAAACACATCGTAAGATGGGCGCCACTG
GAGGTGGACAGGTGGGTGctgatttcttttctttttgaggATAAGATTTA
gacatctttttttttaatattttatgaCAGACTCTGCTTTATTcgtgaaa
tgttttttattcatttaattTTTAGGATCCAGGGCGTATTTTCCCCGGCA
AGAAGATGGCAGGAGTTGTGGGAGGGAAGAATAGCACAACTCCTCCTTTA
AAAGTAAGTAATTTTCTTTGTCATCAACTGTAGAACGTAACAAAAAATAA
NCGAATTTCTATAGAAAATATTGTGTACAtaaatcgaaatgaaaaatctt
GTGTTTTTTTGTGTATTGAATCTGAGAAAATGTTGTAATCTGCTTAGCTA
TTCTCCTATTTTCCTTAGCAATGGTCTCTGACTGTACCTGAGAACTTTAA
ACTAAAAAAGCCTGTTGGTGACTAAGACTCGTATTGATTTAACAGTACAT
CGTCGATTAGGCTAGTTAGAGTGCACNCGGCAAGAAGATGGCAGGAGTTG
TGGGAGGGAAGAATAGCACAACTCCTCCTTTAAAAGTAAGTAATTTTCTT
TGTCATCAACTGTAGAACGTAACAAAAAATAATCCCCAATCAAGCATTTT
TACTCCATTGACAAACATTTCTATCATGGTCAAGGTATTGGTCACTCGTC
GTCCCTTTTCCGCTCAATGTTAAATTATTCAAACTTCTGTGccttcaatt
tcaaaacaattacCTCTTCTTATTGGTAACATTTTTCGACATTTTTCTCC
AGACCAATGGAAAGTATTAATTTCAACTGTGAAATAGTCAATTTCCTGTC
CCTTCAAGAATACTTAGACTACAGCTCAGTCAATTTTCACTTTCCACTTT
CCACCCTTTAGATCTTTCGCATCAATACAAAATATAACATCTTGTATATC
AAAGGGCACGTCCCTGGAGAAGTAGGAGGGTTCCTACGCATCCATGACAG
TCGTTACAAGAAATATCCCAAACCTCCATATTTCCCAACCATTGAAGAAA
GCGAGATGGAATCTCTGGAAGAAGATCTATTCGAAGATCACGTGGTTAGG
CCGACTGACCTCTCACTAGAATTTCCGCCTTATAAActgtaaattaattt
ttataaaatcttGTGTTTTTTTGTGTATTGAATCTGAGAAAATGTTGTAA
TCTGCTT Coding sequence (CDS) from alignment at scaffold_423:253156..254762+ >TCONS_00064742 ID=TCONS_00064742|Name=TCONS_00064742|organism=Clytia hemisphaerica|type=CDS|length=2004bp|location=Sequence derived from alignment at scaffold_423:253156..254762+ (Clytia hemisphaerica) tgttttgatttacttttagGCACGGAGATAAATGCATCACATTTCAAACC TGGACAATTTATCCATCTCCGAGGAACAACGATATACCAAGGATTTCAAG GTGTTATGAAACGCTGGGGAATGAAAGGGCAACCCAAAACTCACGGACAG AGTAAAACACATCGTAAGATGGGCGCCACTGGAGGTGGACAGGATCCAGG GCGTATTTTCCCCGGCAAGAAGATGGCAGGAGTTGTGGGAGGGAAGAATA GCACAACTCCTCCTTTAAAAATCTTTCGCATCAATACAAAATATAACATC TTGTATATCAAAGGGCACGTCCCTGGAGAAGTAGGAGGGTTCCTACGCAT CCATGACAGTCGTTACAAGAAATATCCCAAACCTCCATATTTCCCAACCA TTGAAGAAAGCGAGATGGAATCTCTGGAAGAAGATCTATTCGAAGATCAC GTGGTTAGGCCGACTGACCTCTCACTAGAATTTCCGCCTTATAAActgta atgttttgatttacttttagGCACGGAGATAAATGCATCACATTTCAAAC CTGGACAATTTATCCATCTCCGAGGAACAACGATATACCAAGGATTTCAA GGTGTTATGAAACGCTGGGGAATGAAAGGGCAACCCAAAACTCACGGACA GAGTAAAACACATCGTAAGATGGGCGCCACTGGAGGTGGACAGGATCCAG GGCGTATTTTCCCCGGCAAGAAGATGGCAGGAGTTGTGGGAGGGAAGAAT AGCACAACTCCTCCTTTAAAAATCTTTCGCATCAATACAAAATATAACAT CTTGTATATCAAAGGGCACGTCCCTGGAGAAGTAGGAGGGTTCCTACGCA TCCATGACAGTCGTTACAAGAAATATCCCAAACCTCCATATTTCCCAACC ATTGAAGAAAGCGAGATGGAATCTCTGGAAGAAGATCTATTCGAAGATCA CGTGGTTAGGCCGACTGACCTCTCACTAGAATTTCCGCCTTATAAActgt aatgttttgatttacttttagGCACGGAGATAAATGCATCACATTTCAAA CCTGGACAATTTATCCATCTCCGAGGAACAACGATATACCAAGGATTTCA AGGTGTTATGAAACGCTGGGGAATGAAAGGGCAACCCAAAACTCACGGAC AGAGTAAAACACATCGTAAGATGGGCGCCACTGGAGGTGGACAGGATCCA GGGCGTATTTTCCCCGGCAAGAAGATGGCAGGAGTTGTGGGAGGGAAGAA TAGCACAACTCCTCCTTTAAAAATCTTTCGCATCAATACAAAATATAACA TCTTGTATATCAAAGGGCACGTCCCTGGAGAAGTAGGAGGGTTCCTACGC ATCCATGACAGTCGTTACAAGAAATATCCCAAACCTCCATATTTCCCAAC CATTGAAGAAAGCGAGATGGAATCTCTGGAAGAAGATCTATTCGAAGATC ACGTGGTTAGGCCGACTGACCTCTCACTAGAATTTCCGCCTTATAAActg taatgttttgatttacttttagGCACGGAGATAAATGCATCACATTTCAA ACCTGGACAATTTATCCATCTCCGAGGAACAACGATATACCAAGGATTTC AAGGTGTTATGAAACGCTGGGGAATGAAAGGGCAACCCAAAACTCACGGA CAGAGTAAAACACATCGTAAGATGGGCGCCACTGGAGGTGGACAGGATCC AGGGCGTATTTTCCCCGGCAAGAAGATGGCAGGAGTTGTGGGAGGGAAGA ATAGCACAACTCCTCCTTTAAAAATCTTTCGCATCAATACAAAATATAAC ATCTTGTATATCAAAGGGCACGTCCCTGGAGAAGTAGGAGGGTTCCTACG CATCCATGACAGTCGTTACAAGAAATATCCCAAACCTCCATATTTCCCAA CCATTGAAGAAAGCGAGATGGAATCTCTGGAAGAAGATCTATTCGAAGAT CACGTGGTTAGGCCGACTGACCTCTCACTAGAATTTCCGCCTTATAAAct gtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00064742-exon-scaffold_423-1491911889:253156..253237 | TCONS_00064742-exon-scaffold_423-1491911889:253156..253237 | Clytia hemisphaerica | exon |
TCONS_00064742-exon-scaffold_423-1510915933:253156..253237 | TCONS_00064742-exon-scaffold_423-1510915933:253156..253237 | Clytia hemisphaerica | exon |
TCONS_00064742-exon-scaffold_423-1575043694:253156..253237 | TCONS_00064742-exon-scaffold_423-1575043694:253156..253237 | Clytia hemisphaerica | exon |
TCONS_00064742-exon-scaffold_423-1491911889:253505..253616 | TCONS_00064742-exon-scaffold_423-1491911889:253505..253616 | Clytia hemisphaerica | exon |
TCONS_00064742-exon-scaffold_423-1510915933:253505..253616 | TCONS_00064742-exon-scaffold_423-1510915933:253505..253616 | Clytia hemisphaerica | exon |
TCONS_00064742-exon-scaffold_423-1575043694:253505..253616 | TCONS_00064742-exon-scaffold_423-1575043694:253505..253616 | Clytia hemisphaerica | exon |
TCONS_00064742-exon-scaffold_423-1491911889:253731..253808 | TCONS_00064742-exon-scaffold_423-1491911889:253731..253808 | Clytia hemisphaerica | exon |
TCONS_00064742-exon-scaffold_423-1510915933:253731..253808 | TCONS_00064742-exon-scaffold_423-1510915933:253731..253808 | Clytia hemisphaerica | exon |
TCONS_00064742-exon-scaffold_423-1575043694:253731..253808 | TCONS_00064742-exon-scaffold_423-1575043694:253731..253808 | Clytia hemisphaerica | exon |
TCONS_00064742-exon-scaffold_423-1491911889:254467..254762 | TCONS_00064742-exon-scaffold_423-1491911889:254467..254762 | Clytia hemisphaerica | exon |
TCONS_00064742-exon-scaffold_423-1510915933:254467..254762 | TCONS_00064742-exon-scaffold_423-1510915933:254467..254762 | Clytia hemisphaerica | exon |
TCONS_00064742-exon-scaffold_423-1575043694:254467..254762 | TCONS_00064742-exon-scaffold_423-1575043694:254467..254762 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_423 | supercontig | scaffold_423:253156..254762 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
Term | Definition |
GO:0005840 | ribosome |
GO:0005622 | intracellular |
Vocabulary: Molecular Function
Term | Definition |
GO:0003735 | structural constituent of ribosome |
Vocabulary: Biological Process
Term | Definition |
GO:0006412 | translation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006412 |
translation |
cellular_component |
GO:0005622 |
intracellular |
cellular_component |
GO:0005840 |
ribosome |
molecular_function |
GO:0003735 |
structural constituent of ribosome |
Blast
BLAST of TCONS_00064742 vs. Swiss-Prot (Human)
Match: RM03 (39S ribosomal protein L3, mitochondrial OS=Homo sapiens GN=MRPL3 PE=1 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.826e-34 Identity = 61/115 (53.04%), Postives = 82/115 (71.30%), Query Frame = 3
Query: 21 GTEINASHFKPGQFIHLRGTTIYQGFQGVMKRWGMKGQPKTHGQSKTHRKMGATGGGQDPGRIFPGKKMAGVVGGKNSTTPPLKIFRINTKYNILYIKGHVPGEVGGFLRIHDSR 365
GT + A+HF+PGQ++ + TI +GFQGVMKRWG KGQP THGQ+KTHR+ GA G D GR++PG KM G +G T LK++RINTK+NI+Y+ G VPG +++ DS+
Sbjct: 190 GTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATG-DIGRVWPGTKMPGKMGNIYRTEYGLKVWRINTKHNIIYVNGSVPGHKNCLVKVKDSK 303
The following BLAST results are available for this feature:
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