TCONS_00064742-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00064742-protein
Unique NameTCONS_00064742-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length166

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064742-protein ID=TCONS_00064742-protein|Name=TCONS_00064742-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
CFDLLLGTEINASHFKPGQFIHLRGTTIYQGFQGVMKRWGMKGQPKTHGQ
SKTHRKMGATGGGQDPGRIFPGKKMAGVVGGKNSTTPPLKIFRINTKYNI
LYIKGHVPGEVGGFLRIHDSRYKKYPKPPYFPTIEESEMESLEEDLFEDH
VVRPTDLSLEFPPYKL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040605XLOC_040605Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064742TCONS_00064742Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000597Ribosomal_L3
IPR009000Transl_B-barrel
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.960.10coord: 2..79
e-value: 5.3E-26
score: 90.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..69
IPR000597Ribosomal protein L3PFAMPF00297Ribosomal_L3coord: 11..96
e-value: 5.8E-19
score: 68.2
IPR009000Translation protein, beta-barrel domainSUPERFAMILY50447Translation proteinscoord: 6..135

Blast
[Close]
BLAST of TCONS_00064742-protein vs. Swiss-Prot (Human)
Match: RM03 (39S ribosomal protein L3, mitochondrial OS=Homo sapiens GN=MRPL3 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.065e-43
Identity = 77/162 (47.53%), Postives = 105/162 (64.81%), Query Frame = 0 
Query:    7 GTEINASHFKPGQFIHLRGTTIYQGFQGVMKRWGMKGQPKTHGQSKTHRKMGATGGGQDPGRIFPGKKMAGVVGGKNSTTPPLKIFRINTKYNILYIKGHVPGEVGGFLRIHDSRYKKY-------PKPPYFPTIEESEMESLEEDLFEDHVVRPTDLSLEF 161
            GT + A+HF+PGQ++ +   TI +GFQGVMKRWG KGQP THGQ+KTHR+ GA   G D GR++PG KM G +G    T   LK++RINTK+NI+Y+ G VPG     +++ DS+   Y       P P YFP  +E   E L EDL++++V +P   S+ F
Sbjct:  190 GTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATG-DIGRVWPGTKMPGKMGNIYRTEYGLKVWRINTKHNIIYVNGSVPGHKNCLVKVKDSKLPAYKDLGKNLPFPTYFPDGDE---EELPEDLYDENVCQPGAPSITF 347
The following BLAST results are available for this feature:
BLAST of TCONS_00064742-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM032.065e-4347.5339S ribosomal protein L3, mitochondrial OS=Homo sa... [more]
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