TCONS_00064742 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064742
Unique NameTCONS_00064742
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length568

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064742 ID=TCONS_00064742|Name=TCONS_00064742|organism=Clytia hemisphaerica|type=transcript|length=568bp
tttgttttgatttacttttagGCACGGAGATAAATGCATCACATTTCAAA
CCTGGACAATTTATCCATCTCCGAGGAACAACGATATACCAAGGATTTCA
AGGTGTTATGAAACGCTGGGGAATGAAAGGGCAACCCAAAACTCACGGAC
AGAGTAAAACACATCGTAAGATGGGCGCCACTGGAGGTGGACAGGATCCA
GGGCGTATTTTCCCCGGCAAGAAGATGGCAGGAGTTGTGGGAGGGAAGAA
TAGCACAACTCCTCCTTTAAAAATCTTTCGCATCAATACAAAATATAACA
TCTTGTATATCAAAGGGCACGTCCCTGGAGAAGTAGGAGGGTTCCTACGC
ATCCATGACAGTCGTTACAAGAAATATCCCAAACCTCCATATTTCCCAAC
CATTGAAGAAAGCGAGATGGAATCTCTGGAAGAAGATCTATTCGAAGATC
ACGTGGTTAGGCCGACTGACCTCTCACTAGAATTTCCGCCTTATAAActg
taaattaatttttataaaatcttGTGTTTTTTTGTGTATTGAATCTGAGA
AAATGTTGTAATCTGCTT
Run BLAST on NCBI

protein sequence of TCONS_00064742-protein

>TCONS_00064742-protein ID=TCONS_00064742-protein|Name=TCONS_00064742-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
CFDLLLGTEINASHFKPGQFIHLRGTTIYQGFQGVMKRWGMKGQPKTHGQ
SKTHRKMGATGGGQDPGRIFPGKKMAGVVGGKNSTTPPLKIFRINTKYNI
LYIKGHVPGEVGGFLRIHDSRYKKYPKPPYFPTIEESEMESLEEDLFEDH
VVRPTDLSLEFPPYKL
Run BLAST on NCBI

transcript from alignment at scaffold_423:253156..254762+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064742 ID=TCONS_00064742|Name=TCONS_00064742|organism=Clytia hemisphaerica|type=transcript|length=1607bp|location=Sequence derived from alignment at scaffold_423:253156..254762+ (Clytia hemisphaerica)
tttgttttgatttacttttagGCACGGAGATAAATGCATCACATTTCAAA
CCTGGACAATTTATCCATCTCCGAGGAACAACGTATGTCACCATTAATTT
CTTAATTGGGATTCTGATCGGTCTTATGGACTTCTGTATTCATAACTTCC
AAAACCCATACTGTATCAAAATGATTCCATTTTGTACTTTTggaattttc
ttaaatttctcatcATTTCTTAAATTGTGACAATAAATAAGTCGAACTGT
GTGCTTTAATATTGGTCTACTAACCTTTCAGTTTCACATAATACTACATA
ATAATACTAAGTTAATAGCAGCAATTGATATTTTTCCTATTATTAACAGG
ATATACCAAGGATTTCAAGGTGTTATGAAACGCTGGGGAATGAAAGGGCA
ACCCAAAACTCACGGACAGAGTAAAACACATCGTAAGATGGGCGCCACTG
GAGGTGGACAGGTGGGTGctgatttcttttctttttgaggATAAGATTTA
gacatctttttttttaatattttatgaCAGACTCTGCTTTATTcgtgaaa
tgttttttattcatttaattTTTAGGATCCAGGGCGTATTTTCCCCGGCA
AGAAGATGGCAGGAGTTGTGGGAGGGAAGAATAGCACAACTCCTCCTTTA
AAAGTAAGTAATTTTCTTTGTCATCAACTGTAGAACGTAACAAAAAATAA
NCGAATTTCTATAGAAAATATTGTGTACAtaaatcgaaatgaaaaatctt
GTGTTTTTTTGTGTATTGAATCTGAGAAAATGTTGTAATCTGCTTAGCTA
TTCTCCTATTTTCCTTAGCAATGGTCTCTGACTGTACCTGAGAACTTTAA
ACTAAAAAAGCCTGTTGGTGACTAAGACTCGTATTGATTTAACAGTACAT
CGTCGATTAGGCTAGTTAGAGTGCACNCGGCAAGAAGATGGCAGGAGTTG
TGGGAGGGAAGAATAGCACAACTCCTCCTTTAAAAGTAAGTAATTTTCTT
TGTCATCAACTGTAGAACGTAACAAAAAATAATCCCCAATCAAGCATTTT
TACTCCATTGACAAACATTTCTATCATGGTCAAGGTATTGGTCACTCGTC
GTCCCTTTTCCGCTCAATGTTAAATTATTCAAACTTCTGTGccttcaatt
tcaaaacaattacCTCTTCTTATTGGTAACATTTTTCGACATTTTTCTCC
AGACCAATGGAAAGTATTAATTTCAACTGTGAAATAGTCAATTTCCTGTC
CCTTCAAGAATACTTAGACTACAGCTCAGTCAATTTTCACTTTCCACTTT
CCACCCTTTAGATCTTTCGCATCAATACAAAATATAACATCTTGTATATC
AAAGGGCACGTCCCTGGAGAAGTAGGAGGGTTCCTACGCATCCATGACAG
TCGTTACAAGAAATATCCCAAACCTCCATATTTCCCAACCATTGAAGAAA
GCGAGATGGAATCTCTGGAAGAAGATCTATTCGAAGATCACGTGGTTAGG
CCGACTGACCTCTCACTAGAATTTCCGCCTTATAAActgtaaattaattt
ttataaaatcttGTGTTTTTTTGTGTATTGAATCTGAGAAAATGTTGTAA
TCTGCTT

Coding sequence (CDS) from alignment at scaffold_423:253156..254762+

>TCONS_00064742 ID=TCONS_00064742|Name=TCONS_00064742|organism=Clytia hemisphaerica|type=CDS|length=2004bp|location=Sequence derived from alignment at scaffold_423:253156..254762+ (Clytia hemisphaerica)
tgttttgatttacttttagGCACGGAGATAAATGCATCACATTTCAAACC
TGGACAATTTATCCATCTCCGAGGAACAACGATATACCAAGGATTTCAAG
GTGTTATGAAACGCTGGGGAATGAAAGGGCAACCCAAAACTCACGGACAG
AGTAAAACACATCGTAAGATGGGCGCCACTGGAGGTGGACAGGATCCAGG
GCGTATTTTCCCCGGCAAGAAGATGGCAGGAGTTGTGGGAGGGAAGAATA
GCACAACTCCTCCTTTAAAAATCTTTCGCATCAATACAAAATATAACATC
TTGTATATCAAAGGGCACGTCCCTGGAGAAGTAGGAGGGTTCCTACGCAT
CCATGACAGTCGTTACAAGAAATATCCCAAACCTCCATATTTCCCAACCA
TTGAAGAAAGCGAGATGGAATCTCTGGAAGAAGATCTATTCGAAGATCAC
GTGGTTAGGCCGACTGACCTCTCACTAGAATTTCCGCCTTATAAActgta
atgttttgatttacttttagGCACGGAGATAAATGCATCACATTTCAAAC
CTGGACAATTTATCCATCTCCGAGGAACAACGATATACCAAGGATTTCAA
GGTGTTATGAAACGCTGGGGAATGAAAGGGCAACCCAAAACTCACGGACA
GAGTAAAACACATCGTAAGATGGGCGCCACTGGAGGTGGACAGGATCCAG
GGCGTATTTTCCCCGGCAAGAAGATGGCAGGAGTTGTGGGAGGGAAGAAT
AGCACAACTCCTCCTTTAAAAATCTTTCGCATCAATACAAAATATAACAT
CTTGTATATCAAAGGGCACGTCCCTGGAGAAGTAGGAGGGTTCCTACGCA
TCCATGACAGTCGTTACAAGAAATATCCCAAACCTCCATATTTCCCAACC
ATTGAAGAAAGCGAGATGGAATCTCTGGAAGAAGATCTATTCGAAGATCA
CGTGGTTAGGCCGACTGACCTCTCACTAGAATTTCCGCCTTATAAActgt
aatgttttgatttacttttagGCACGGAGATAAATGCATCACATTTCAAA
CCTGGACAATTTATCCATCTCCGAGGAACAACGATATACCAAGGATTTCA
AGGTGTTATGAAACGCTGGGGAATGAAAGGGCAACCCAAAACTCACGGAC
AGAGTAAAACACATCGTAAGATGGGCGCCACTGGAGGTGGACAGGATCCA
GGGCGTATTTTCCCCGGCAAGAAGATGGCAGGAGTTGTGGGAGGGAAGAA
TAGCACAACTCCTCCTTTAAAAATCTTTCGCATCAATACAAAATATAACA
TCTTGTATATCAAAGGGCACGTCCCTGGAGAAGTAGGAGGGTTCCTACGC
ATCCATGACAGTCGTTACAAGAAATATCCCAAACCTCCATATTTCCCAAC
CATTGAAGAAAGCGAGATGGAATCTCTGGAAGAAGATCTATTCGAAGATC
ACGTGGTTAGGCCGACTGACCTCTCACTAGAATTTCCGCCTTATAAActg
taatgttttgatttacttttagGCACGGAGATAAATGCATCACATTTCAA
ACCTGGACAATTTATCCATCTCCGAGGAACAACGATATACCAAGGATTTC
AAGGTGTTATGAAACGCTGGGGAATGAAAGGGCAACCCAAAACTCACGGA
CAGAGTAAAACACATCGTAAGATGGGCGCCACTGGAGGTGGACAGGATCC
AGGGCGTATTTTCCCCGGCAAGAAGATGGCAGGAGTTGTGGGAGGGAAGA
ATAGCACAACTCCTCCTTTAAAAATCTTTCGCATCAATACAAAATATAAC
ATCTTGTATATCAAAGGGCACGTCCCTGGAGAAGTAGGAGGGTTCCTACG
CATCCATGACAGTCGTTACAAGAAATATCCCAAACCTCCATATTTCCCAA
CCATTGAAGAAAGCGAGATGGAATCTCTGGAAGAAGATCTATTCGAAGAT
CACGTGGTTAGGCCGACTGACCTCTCACTAGAATTTCCGCCTTATAAAct
gtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040605XLOC_040605Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064742-exon-scaffold_423-1491911889:253156..253237TCONS_00064742-exon-scaffold_423-1491911889:253156..253237Clytia hemisphaericaexon
TCONS_00064742-exon-scaffold_423-1510915933:253156..253237TCONS_00064742-exon-scaffold_423-1510915933:253156..253237Clytia hemisphaericaexon
TCONS_00064742-exon-scaffold_423-1575043694:253156..253237TCONS_00064742-exon-scaffold_423-1575043694:253156..253237Clytia hemisphaericaexon
TCONS_00064742-exon-scaffold_423-1491911889:253505..253616TCONS_00064742-exon-scaffold_423-1491911889:253505..253616Clytia hemisphaericaexon
TCONS_00064742-exon-scaffold_423-1510915933:253505..253616TCONS_00064742-exon-scaffold_423-1510915933:253505..253616Clytia hemisphaericaexon
TCONS_00064742-exon-scaffold_423-1575043694:253505..253616TCONS_00064742-exon-scaffold_423-1575043694:253505..253616Clytia hemisphaericaexon
TCONS_00064742-exon-scaffold_423-1491911889:253731..253808TCONS_00064742-exon-scaffold_423-1491911889:253731..253808Clytia hemisphaericaexon
TCONS_00064742-exon-scaffold_423-1510915933:253731..253808TCONS_00064742-exon-scaffold_423-1510915933:253731..253808Clytia hemisphaericaexon
TCONS_00064742-exon-scaffold_423-1575043694:253731..253808TCONS_00064742-exon-scaffold_423-1575043694:253731..253808Clytia hemisphaericaexon
TCONS_00064742-exon-scaffold_423-1491911889:254467..254762TCONS_00064742-exon-scaffold_423-1491911889:254467..254762Clytia hemisphaericaexon
TCONS_00064742-exon-scaffold_423-1510915933:254467..254762TCONS_00064742-exon-scaffold_423-1510915933:254467..254762Clytia hemisphaericaexon
TCONS_00064742-exon-scaffold_423-1575043694:254467..254762TCONS_00064742-exon-scaffold_423-1575043694:254467..254762Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064742-proteinTCONS_00064742-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:253156..254762 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
127.582	117.955	72.1712	59.7707	30.3854	30.119	36.2103	32.1154	30.979	27.5416	36.6446	31.3285	31.022	33.104	43.9945	52.8735	51.5597	53.0752	19.9599	19.2376	31.9132	32.1576	70.5918	53.8767	57.4016	55.6802	22.4942	22.9941	33.0157	36.0963
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000597Ribosomal_L3
IPR009000Transl_B-barrel
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
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BLAST of TCONS_00064742 vs. Swiss-Prot (Human)
Match: RM03 (39S ribosomal protein L3, mitochondrial OS=Homo sapiens GN=MRPL3 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.826e-34
Identity = 61/115 (53.04%), Postives = 82/115 (71.30%), Query Frame = 3 
Query:   21 GTEINASHFKPGQFIHLRGTTIYQGFQGVMKRWGMKGQPKTHGQSKTHRKMGATGGGQDPGRIFPGKKMAGVVGGKNSTTPPLKIFRINTKYNILYIKGHVPGEVGGFLRIHDSR 365
            GT + A+HF+PGQ++ +   TI +GFQGVMKRWG KGQP THGQ+KTHR+ GA   G D GR++PG KM G +G    T   LK++RINTK+NI+Y+ G VPG     +++ DS+
Sbjct:  190 GTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATG-DIGRVWPGTKMPGKMGNIYRTEYGLKVWRINTKHNIIYVNGSVPGHKNCLVKVKDSK 303
The following BLAST results are available for this feature:
BLAST of TCONS_00064742 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM032.826e-3453.0439S ribosomal protein L3, mitochondrial OS=Homo sa... [more]
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