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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064712 ID=TCONS_00064712|Name=TCONS_00064712|organism=Clytia hemisphaerica|type=transcript|length=1887bp
GTCAGACGCCGTCAAGAAATGCCGCAATATCAGCACTGCATGGATTGACT
ACAAGAAGGCATTTGACTCCATCCCTCACGACTGGCTAATTGAATCGCTC
AAAATCCACAAGTTTGATCCTACCACCATCAATTTCTTCTCGAAAACCAT
CCAGAACTGGCAAACATCCCTACATCTCCACACTGACGAAGTTGAAATCG
CGAGCGAAATGTTTCAAATAAAGAATGGAATATTTCAGGGAGACAGCCCA
TCCGGTCTTCACTTCGTCATATGTCTACTTCCATTAACATGGCTCCTCAA
CAAAACAAACATTGGTTACAAACTTTCGAACTCCGACCAGAAAATCAGCC
ACCTAATGTTTATGGATGACCTAAAACTTTATGCCCCAAACGATAAACTT
ATGAACAACCTTATCGATATTGTTAAACGTTTTAGCGACGACATTAAGAT
GTCATTTGGAATCGAAAAGTGTAATACGCTCACCATCATCCGAGGGAAGG
TAAAACGATCAAACAATACGAGACTTGATAACGGAGAGGAGATAAAGTCG
TTAAACAATCAGGAATATTACAAATACCTCGGCTTTAAAGAACAAGACCA
ATTGAGCCCGAACACCAAAGCAGCTCTTAAAGTCGAATATTTCACGAGAA
TCAAAAAGATACTCAAAACTGAACTGAACAGTAAAAATACCATTACCGCA
ATCAATGCGTATGCTGTCCCAGCACTCTCCTACGGGTTCCAGATCGTCGA
TTGGTCAATCACTGAGCTAGAAGCAATCGACAGGTCCACACGCACTCTTC
TTCAGCAGTACCACCTAATGCATCACCAAAGTGACATTCTCCGTATCTAC
CTACCCAGAAAATCCGGCGGCCGTGGACTCGTCAACATTACCAACCACTA
CAAAAAGACGATAATCAACTTCAGCCACTATCTTAAGAACACCAATGAAC
CCTTGCTCCAAGCCGTATCCAATTGGCAACTTATCCGTGGCCAGAAATCA
ATCCACGCAAAAGCCGTCCAGTACTGTGAAGAACTAAACATCGACCATCA
ACAAACACAAACACTCTCGAAACTACAACTCAAacaaaccattaaaaagc
aataCATCGAATCCATGACAAACTCCCTCCTACAAAAACCACTACACGGC
CAACACTTCAGACAACTACAACAACCCCACATCGACTCTACCAAATCGAA
CCTATGGCTCAAATCATCCACCCTCAAACGATCCACCGAATCAACCATCT
GCGCCATCCAAGAACAGTCAATCACCACCAAATATATCAAGAAACATATC
CACCACTCAACTAACGACGACTCCTGTCGAATCTGCCGATCATCCAAAGA
AACCATCCACCACATCATTTCCGGTTGTACTGCCCTTGCTCCTACCAAAT
ATCTGAAAAGACACAACGACCTTGCTAAATACCTACACATCCTTCTCCTC
CAAAAACATCAACTAGACACCACCGACCACCTATGGTACAACTACACACC
TCCTCCAGTAATCGAAAATCACCAAATCAAAATCCTGTGGGACTTCTCAA
TCCAAACTGACCACCATCTCCAGCATAACAAACCTGACATCTTAATACTC
CACAAAACCCAACGAAAAGCCATCATAGTCGACAAAATCAGAAAGTACAC
CGACCTCGCGATCGAACTGAAAGCCATGTGGAATCTGGACAAGGTGGAGA
TAGTTCCCTTTGTAATTGGTGCAACTGGTGTATTTTACAAAGAATTTGAC
AAAGACATTGAGAAACTTGAATTGAATGGTATGTTGAGGCATGAAATGTG
CCAAAAGATTATATTATTAGGAACTGCTCATATAGTCCGAGCATTCATGC
AAATCTCATAAATTATTCactaaaaattctctttttt Run BLAST on NCBI protein sequence of TCONS_00064712-protein >TCONS_00064712-protein ID=TCONS_00064712-protein|Name=TCONS_00064712-protein|organism=Clytia hemisphaerica|type=polypeptide|length=619bp
SDAVKKCRNISTAWIDYKKAFDSIPHDWLIESLKIHKFDPTTINFFSKTI
QNWQTSLHLHTDEVEIASEMFQIKNGIFQGDSPSGLHFVICLLPLTWLLN
KTNIGYKLSNSDQKISHLMFMDDLKLYAPNDKLMNNLIDIVKRFSDDIKM
SFGIEKCNTLTIIRGKVKRSNNTRLDNGEEIKSLNNQEYYKYLGFKEQDQ
LSPNTKAALKVEYFTRIKKILKTELNSKNTITAINAYAVPALSYGFQIVD
WSITELEAIDRSTRTLLQQYHLMHHQSDILRIYLPRKSGGRGLVNITNHY
KKTIINFSHYLKNTNEPLLQAVSNWQLIRGQKSIHAKAVQYCEELNIDHQ
QTQTLSKLQLKQTIKKQYIESMTNSLLQKPLHGQHFRQLQQPHIDSTKSN
LWLKSSTLKRSTESTICAIQEQSITTKYIKKHIHHSTNDDSCRICRSSKE
TIHHIISGCTALAPTKYLKRHNDLAKYLHILLLQKHQLDTTDHLWYNYTP
PPVIENHQIKILWDFSIQTDHHLQHNKPDILILHKTQRKAIIVDKIRKYT
DLAIELKAMWNLDKVEIVPFVIGATGVFYKEFDKDIEKLELNGMLRHEMC
QKIILLGTAHIVRAFMQIS Run BLAST on NCBI transcript from alignment at scaffold_422:6744..8675- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064712 ID=TCONS_00064712|Name=TCONS_00064712|organism=Clytia hemisphaerica|type=transcript|length=1932bp|location=Sequence derived from alignment at scaffold_422:6744..8675- (Clytia hemisphaerica)
GTCAGACGCCGTCAAGAAATGCCGCAATATCAGCACTGCATGGATTGACT
ACAAGAAGGCATTTGACTCCATCCCTCACGACTGGCTAATTGAATCGCTC
AAAATCCACAAGTTTGATCCTACCACCATCAATTTCTTCTCGAAAACCAT
CCAGAACTGGCAAACATCCCTACATCTCCACACTGACGAAGTTGAAATCG
CGAGCGAAATGTTTCAAATAAAGAATGGAATATTTCAGGGAGACAGCCCA
TCCGGTCTTCACTTCGTCATATGTCTACTTCCATTAACATGGCTCCTCAA
CAAAACAAACATTGGTTACAAACTTTCGAACTCCGACCAGAAAATCAGCC
ACCTAATGTTTATGGATGACCTAAAACTTTATGCCCCAAACGATAAACTT
ATGAACAACCTTATCGATATTGTTAAACGTTTTAGCGACGACATTAAGAT
GTCATTTGGAATCGAAAAGTGTAATACGCTCACCATCATCCGAGGGAAGG
TAAAACGATCAAACAATACGAGACTTGATAACGGAGAGGAGATAAAGTCG
TTAAACAATCAGGAATATTACAAATACCTCGGCTTTAAAGAACAAGACCA
ATTGAGCCCGAACACCAAAGCAGCTCTTAAAGTCGAATATTTCACGAGAA
TCAAAAAGATACTCAAAACTGAACTGAACAGTAAAAATACCATTACCGCA
ATCAATGCGTATGCTGTCCCAGCACTCTCCTACGGGTTCCAGATCGTCGA
TTGGTCAATCACTGAGCTAGAAGCAATCGACAGGTCCACACGCACTCTTC
TTCAGCAGTACCACCTAATGCATCACCAAAGTGACATTCTCCGTATCTAC
CTACCCAGAAAATCCGGCGGCCGTGGACTCGTCAACATTACCAACCACTA
CAAAAAGACGATAATCAACTTCAGCCACTATCTTAAGAACACCAATGAAC
CCTTGCTCCAAGCCGTATCCAATTGGCAACTTATCCGTGGCCAGAAATCA
ATCCACGCAAAAGCCGTCCAGTACTGTGAAGAACTAAACATCGACCATCA
ACAAACACAAACACTCTCGAAACTACAACTCAAACAAACCATTAAAAAGC
AATACATCGAATCCATGACAAACTCCCTCCTACAAAAACCACTACACGGC
CAACACTTCAGACAACTACAACAACCCCACATCGACTCTACCAAATCGAA
CCTATGGCTCAAATCATCCACCCTCAAACGATCCACCGAATCAACCATCT
GCGCCATCCAAGAACAGTCAATCACCACCAAATATATCAAGAAACATATC
CACCACTCAACTAACGACGACTCCTGTCGAATCTGCCGATCATCCAAAGA
AACCATCCACCACATCATTTCCGGTTGTACTGCCCTTGCTCCTACCAAAT
ATCTGAAAAGACACAACGACCTTGCTAAATACCTACACATCCTTCTCCTC
CAAAAACATCAACTAGACACCACCGACCACCTATGGTACAACTACACACC
TCCTCCAGTAATCGAAAATCACCAAATCAAAATCCTGTGGGACTTCTCAA
TCCAAACTGACCACCATCTCCAGCATAACAAACCTGACATCTTAATACTC
CACAAAACCCAACGAAAAGCCATCATAGTCGACATCGCCATCCCCAATGA
CTCCAACATTGCCACCAAACGTATCGACAAAATCAGAAAGTACACCGACC
TCGCGATCGAACTGAAAGCCATGTGGAATCTGGACAAGGTGGAGATAGTT
CCCTTTGTAATTGGTGCAACTGGTGTATTTTACAAAGAATTTGACAAAGA
CATTGAGAAACTTGAATTGAATGGTATGTTGAGGCATGAAATGTGCCAAA
AGATTATATTATTAGGAACTGCTCATATAGTCCGAGCATTCATGCAAATC
TCATAAATTATTCACTAAAAATTCTCTTTTTT Coding sequence (CDS) from alignment at scaffold_422:6744..8675- >TCONS_00064712 ID=TCONS_00064712|Name=TCONS_00064712|organism=Clytia hemisphaerica|type=CDS|length=3720bp|location=Sequence derived from alignment at scaffold_422:6744..8675- (Clytia hemisphaerica)
AAAATCAGAAAGTACACCGACCTCGCGATCGAACTGAAAGCCATGTGGAA
TCTGGACAAGGTGGAGATAGTTCCCTTTGTAATTGGTGCAACTGGTGTAT
TTTACAAAGAATTTGACAAAGACATTGAGAAACTTGAATTGAATGGTATG
TTGAGGCATGAAATGTGCCAAAAGATTATATTATTAGGAACTGCTCATAT
AGTCCGAGCATTCATGCAAATCTCATAATCAGACGCCGTCAAGAAATGCC
GCAATATCAGCACTGCATGGATTGACTACAAGAAGGCATTTGACTCCATC
CCTCACGACTGGCTAATTGAATCGCTCAAAATCCACAAGTTTGATCCTAC
CACCATCAATTTCTTCTCGAAAACCATCCAGAACTGGCAAACATCCCTAC
ATCTCCACACTGACGAAGTTGAAATCGCGAGCGAAATGTTTCAAATAAAG
AATGGAATATTTCAGGGAGACAGCCCATCCGGTCTTCACTTCGTCATATG
TCTACTTCCATTAACATGGCTCCTCAACAAAACAAACATTGGTTACAAAC
TTTCGAACTCCGACCAGAAAATCAGCCACCTAATGTTTATGGATGACCTA
AAACTTTATGCCCCAAACGATAAACTTATGAACAACCTTATCGATATTGT
TAAACGTTTTAGCGACGACATTAAGATGTCATTTGGAATCGAAAAGTGTA
ATACGCTCACCATCATCCGAGGGAAGGTAAAACGATCAAACAATACGAGA
CTTGATAACGGAGAGGAGATAAAGTCGTTAAACAATCAGGAATATTACAA
ATACCTCGGCTTTAAAGAACAAGACCAATTGAGCCCGAACACCAAAGCAG
CTCTTAAAGTCGAATATTTCACGAGAATCAAAAAGATACTCAAAACTGAA
CTGAACAGTAAAAATACCATTACCGCAATCAATGCGTATGCTGTCCCAGC
ACTCTCCTACGGGTTCCAGATCGTCGATTGGTCAATCACTGAGCTAGAAG
CAATCGACAGGTCCACACGCACTCTTCTTCAGCAGTACCACCTAATGCAT
CACCAAAGTGACATTCTCCGTATCTACCTACCCAGAAAATCCGGCGGCCG
TGGACTCGTCAACATTACCAACCACTACAAAAAGACGATAATCAACTTCA
GCCACTATCTTAAGAACACCAATGAACCCTTGCTCCAAGCCGTATCCAAT
TGGCAACTTATCCGTGGCCAGAAATCAATCCACGCAAAAGCCGTCCAGTA
CTGTGAAGAACTAAACATCGACCATCAACAAACACAAACACTCTCGAAAC
TACAACTCAAACAAACCATTAAAAAGCAATACATCGAATCCATGACAAAC
TCCCTCCTACAAAAACCACTACACGGCCAACACTTCAGACAACTACAACA
ACCCCACATCGACTCTACCAAATCGAACCTATGGCTCAAATCATCCACCC
TCAAACGATCCACCGAATCAACCATCTGCGCCATCCAAGAACAGTCAATC
ACCACCAAATATATCAAGAAACATATCCACCACTCAACTAACGACGACTC
CTGTCGAATCTGCCGATCATCCAAAGAAACCATCCACCACATCATTTCCG
GTTGTACTGCCCTTGCTCCTACCAAATATCTGAAAAGACACAACGACCTT
GCTAAATACCTACACATCCTTCTCCTCCAAAAACATCAACTAGACACCAC
CGACCACCTATGGTACAACTACACACCTCCTCCAGTAATCGAAAATCACC
AAATCAAAATCCTGTGGGACTTCTCAATCCAAACTGACCACCATCTCCAG
CATAACAAACCTGACATCTTAATACTCCACAAAACCCAACGAAAAGCCAT
CATAGTCGACAAAATCAGAAAGTACACCGACCTCGCGATCGAACTGAAAG
CCATGTGGAATCTGGACAAGGTGGAGATAGTTCCCTTTGTAATTGGTGCA
ACTGGTGTATTTTACAAAGAATTTGACAAAGACATTGAGAAACTTGAATT
GAATGGTATGTTGAGGCATGAAATGTGCCAAAAGATTATATTATTAGGAA
CTGCTCATATAGTCCGAGCATTCATGCAAATCTCATAATCAGACGCCGTC
AAGAAATGCCGCAATATCAGCACTGCATGGATTGACTACAAGAAGGCATT
TGACTCCATCCCTCACGACTGGCTAATTGAATCGCTCAAAATCCACAAGT
TTGATCCTACCACCATCAATTTCTTCTCGAAAACCATCCAGAACTGGCAA
ACATCCCTACATCTCCACACTGACGAAGTTGAAATCGCGAGCGAAATGTT
TCAAATAAAGAATGGAATATTTCAGGGAGACAGCCCATCCGGTCTTCACT
TCGTCATATGTCTACTTCCATTAACATGGCTCCTCAACAAAACAAACATT
GGTTACAAACTTTCGAACTCCGACCAGAAAATCAGCCACCTAATGTTTAT
GGATGACCTAAAACTTTATGCCCCAAACGATAAACTTATGAACAACCTTA
TCGATATTGTTAAACGTTTTAGCGACGACATTAAGATGTCATTTGGAATC
GAAAAGTGTAATACGCTCACCATCATCCGAGGGAAGGTAAAACGATCAAA
CAATACGAGACTTGATAACGGAGAGGAGATAAAGTCGTTAAACAATCAGG
AATATTACAAATACCTCGGCTTTAAAGAACAAGACCAATTGAGCCCGAAC
ACCAAAGCAGCTCTTAAAGTCGAATATTTCACGAGAATCAAAAAGATACT
CAAAACTGAACTGAACAGTAAAAATACCATTACCGCAATCAATGCGTATG
CTGTCCCAGCACTCTCCTACGGGTTCCAGATCGTCGATTGGTCAATCACT
GAGCTAGAAGCAATCGACAGGTCCACACGCACTCTTCTTCAGCAGTACCA
CCTAATGCATCACCAAAGTGACATTCTCCGTATCTACCTACCCAGAAAAT
CCGGCGGCCGTGGACTCGTCAACATTACCAACCACTACAAAAAGACGATA
ATCAACTTCAGCCACTATCTTAAGAACACCAATGAACCCTTGCTCCAAGC
CGTATCCAATTGGCAACTTATCCGTGGCCAGAAATCAATCCACGCAAAAG
CCGTCCAGTACTGTGAAGAACTAAACATCGACCATCAACAAACACAAACA
CTCTCGAAACTACAACTCAAACAAACCATTAAAAAGCAATACATCGAATC
CATGACAAACTCCCTCCTACAAAAACCACTACACGGCCAACACTTCAGAC
AACTACAACAACCCCACATCGACTCTACCAAATCGAACCTATGGCTCAAA
TCATCCACCCTCAAACGATCCACCGAATCAACCATCTGCGCCATCCAAGA
ACAGTCAATCACCACCAAATATATCAAGAAACATATCCACCACTCAACTA
ACGACGACTCCTGTCGAATCTGCCGATCATCCAAAGAAACCATCCACCAC
ATCATTTCCGGTTGTACTGCCCTTGCTCCTACCAAATATCTGAAAAGACA
CAACGACCTTGCTAAATACCTACACATCCTTCTCCTCCAAAAACATCAAC
TAGACACCACCGACCACCTATGGTACAACTACACACCTCCTCCAGTAATC
GAAAATCACCAAATCAAAATCCTGTGGGACTTCTCAATCCAAACTGACCA
CCATCTCCAGCATAACAAACCTGACATCTTAATACTCCACAAAACCCAAC
GAAAAGCCATCATAGTCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00064712-exon-scaffold_422-1575043694:7043..8675 | TCONS_00064712-exon-scaffold_422-1575043694:7043..8675 | Clytia hemisphaerica | exon |
| TCONS_00064712-exon-scaffold_422-1575043694:6744..6997 | TCONS_00064712-exon-scaffold_422-1575043694:6744..6997 | Clytia hemisphaerica | exon |
| TCONS_00064712-exon-scaffold_422-1510915933:7043..8675 | TCONS_00064712-exon-scaffold_422-1510915933:7043..8675 | Clytia hemisphaerica | exon |
| TCONS_00064712-exon-scaffold_422-1510915933:6744..6997 | TCONS_00064712-exon-scaffold_422-1510915933:6744..6997 | Clytia hemisphaerica | exon |
| TCONS_00064712-exon-scaffold_422-1491911889:7043..8675 | TCONS_00064712-exon-scaffold_422-1491911889:7043..8675 | Clytia hemisphaerica | exon |
| TCONS_00064712-exon-scaffold_422-1491911889:6744..6997 | TCONS_00064712-exon-scaffold_422-1491911889:6744..6997 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_422 | supercontig | scaffold_422:6744..8675 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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