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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064664 ID=TCONS_00064664|Name=TCONS_00064664|organism=Clytia hemisphaerica|type=transcript|length=2465bp
atttactttattattttgataatttggtGTTTATATTACGTTAGTTTATG
TATGTTTACAAATAGGATTTGTAAGACATTTCTTTTCGCACTCTTGCTAT
CTAGACGACCATAATGAAATTTGTTTTGTCAAACATTATCAAATTAAAAA
CTAGATCTTTATACAAAGCCATTGATGAAGCTGTCTCATGGGATGGGAAg
tttaacattttcaattatccAGACGCTCAGAGAAATTCTTTTTTGGAGAG
ACAATGTAAATGTATTAAAAAACAAAAGCGTGTTAAAGTCCCAAGTGAAG
TATACTATCTATTCTGACGCAAGTAGCAGTGGGATAGGAGATGTATTAAA
AGAGAATTCGATTTTAAATGTGTGTAACAAAATGTTTGATGTAGAGGAAA
TTGATAGAAGTTCAACTTGGAGGGAACTCGAAGCGATCAGATTCGGATTG
GATTCATTTTGCCATAAGTTAAGTAACTCTTCCATATCTTGGATGGCAGA
TAATAGAGCAGCCATGTATGTTTCTTCAGGTGGTAGCAATAAGCCCCATT
TACAAGAATTAGCACTAAGAATCTACGAATTGTCTCGTAACTTTAATATA
AATTTGGAAGTGAATTGGGTTCCTAGGGACGAGAACCGAGTAGCGGACAG
AGTTTCTAAAATAATAGATCCAGACGACTGGGAAATCACAGAGGAAATTT
TGCACTTTCTCGAACATCGTTGGGGTAACTTTACAGTCGACAAATTCGCT
AATTTTGACAATGCAAAATGCGAGAGGTTTAATTCCAAGTATGTTGTGCC
CGGTACAGAGGCTGTTGACGCCTTCACTCAAGACTGGCGCTTAGAGCGAA
ATTTATTAGTTCCTCCTGTCAGTCAGATTCCTCAAGTCTTACGCCTTTTA
AAAAGCCAACCAGGAATTAAAGGGGTGCTCGTCATACCTTTTTGGACAGC
GTCTTCTTTTTGGCCCCTTCTAAGAGAAGGGGatgaattttcatattttg
tcaAGGATTACGTTATTTTCGAAGACACGTCGAACTTGTTACGCCTTGGG
AGGTACAAATACTCTTTACTCGGTTCTCCACGATATAGAGGACGTATCAT
AGCCTTAGAGGTTATTAGTTGATTCAGAAGGATAGTCCTTATCACCTTAT
AGAAAGAAGCTGAATTAATTTTAACATGTATTTCTACACCCAAGGAAAAG
GGTGAGGCAGGGGTTGATTAGTGGTATCAACTGAGGCtatattaattttg
aaatatattttctaCACCCAAAAAGAAGGGTGAGGCAGGGGTTGATTAGC
GGTATCAACTGAGGCCAGAGTTTAGCGACTAGGTCGCTATGGCAGCTTGG
CTGCCGTAGCATAAAGTCAAAAATGCCTCATATTTACGACAAAATAGTAA
TTTGCTCTTGCATTTCACTTATACCTTTAGCACAAGTCGCCCAAGACCTG
TCTTCTCGTGTTGATGATCCACAGCTTAAAGAGCTCGCTACCGGAATCGG
AGATATCCTGACGAAAGCTCGTGCAGAGAGTACAATTAACAAATATAGCT
GCTACTTCAAAAAATGGGAAAGATGGTGTGCGACATTCGAAGAGGTCCAG
CCTTTTCCAGCCAAAGACTTTCACTTCGTTCTATATATCATCAGCCTTAT
CCAGCTTGGCGAATCTTTCCACGTTATAGAATCTGTATTCTACGCCGTGA
AACATTTCCACAATGTGGCTTCGAAGCCAGATCCAACATCTTCTACGCTA
GCCGAATACATCCTCGAAGCTGCAAAAAGAATCTGCCACAGAAAAAGTTC
GAAAAAAGAACCAATCACTTCAGATCACATTCGTAAGATCTTTCAATTGA
TTAATGGGGACCAGGCTAACCTGCTTGATTTGAGGAATTTTACCATTATC
ATCTTATCGTATGCTGGATTTCTACGTTATGATGAGGTTTCAAATTTAAT
CTTTGGGGACATTCTAGTCTTTGAGACGTATATGAAACTATTCatagaaa
agtcaaaaacagaCCAACATCGTGAAGGGGCTTGGGTCTATATTGCCAAA
TTAGATTCCCCCTTTTGTCCTGTTAAGACACTGCTTAGATTTACTAAGAA
TGCAAACATAACCAACGATAATGAGTACCTATTCCGTGCCACttctttct
ttaagaaaaaggGCATTCATAAACTGAGAAATAAGAACAAACCCATTTGT
TACTCAACGGCCAGGTCCGCTGTTTTGCTTTATATCAAGAGAATTGGTCT
TGACGTAAAACTTTTTGGACTCCACAGCCTAAGGAGGGGCGGAGCTACGG
AAGCCGCTAACCGGGGAGTTAATGATAGACTTTTCCAGAAGCATGGCAGG
GGGGAAACCGCTGGTGTGAAGAACGGATATGTTCAAGAAGATATAAATAG
TCTTTTGAAAGTTTCTCTAGGGCTAGGCCTCTGATACATACCTCTTTCTC
TCTGTGACAAGTTAC Run BLAST on NCBI protein sequence of TCONS_00064664-protein >TCONS_00064664-protein ID=TCONS_00064664-protein|Name=TCONS_00064664-protein|organism=Clytia hemisphaerica|type=polypeptide|length=353bp
MPHIYDKIVICSCISLIPLAQVAQDLSSRVDDPQLKELATGIGDILTKAR
AESTINKYSCYFKKWERWCATFEEVQPFPAKDFHFVLYIISLIQLGESFH
VIESVFYAVKHFHNVASKPDPTSSTLAEYILEAAKRICHRKSSKKEPITS
DHIRKIFQLINGDQANLLDLRNFTIIILSYAGFLRYDEVSNLIFGDILVF
ETYMKLFIEKSKTDQHREGAWVYIAKLDSPFCPVKTLLRFTKNANITNDN
EYLFRATSFFKKKGIHKLRNKNKPICYSTARSAVLLYIKRIGLDVKLFGL
HSLRRGGATEAANRGVNDRLFQKHGRGETAGVKNGYVQEDINSLLKVSLG
LGL Run BLAST on NCBI transcript from alignment at scaffold_420:44302..46920- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064664 ID=TCONS_00064664|Name=TCONS_00064664|organism=Clytia hemisphaerica|type=transcript|length=2619bp|location=Sequence derived from alignment at scaffold_420:44302..46920- (Clytia hemisphaerica)
ATTTACTTTATTATTTTGATAATTTGGTGTTTATATTACGTTAGTTTATG
TATGTTTACAAATAGGATTTGTAAGACATTTCTTTTCGCACTCTTGCTAT
CTAGACGACCATAATGAAATTTGTTTTGTCAAACATTATCAAATTAAAAA
CTAGATCTTTATACAAAGCCATTGATGAAGCTGTCTCATGGGATGGGAAG
TTTAACATTTTCAATTATCCAGACGCTCAGAGAAATTCTTTTTTGGAGAG
ACAATGTAAATGTATTAAAAAACAAAAGCGTGTTAAAGTCCCAAGTGAAG
TATACTATCTATTCTGACGCAAGTAGCAGTGGGATAGGAGATGTATTAAA
AGAGAATTCGATTTTAAATGTGTGTAACAAAATGTTTGATGTAGAGGAAA
TTGATAGAAGTTCAACTTGGAGGGAACTCGAAGCGATCAGATTCGGATTG
GATTCATTTTGCCATAAGTTAAGTAACTCTTCCATATCTTGGATGGCAGA
TAATAGAGCAGCCATGTATGTTTCTTCAGGTGGTAGCAATAAGCCCCATT
TACAAGAATTAGCACTAAGAATCTACGAATTGTCTCGTAACTTTAATATA
AATTTGGAAGTGAATTGGGTTCCTAGGGACGAGAACCGAGTAGCGGACAG
AGTTTCTAAAATAATAGATCCAGACGACTGGGAAATCACAGAGGAAATTT
TGCACTTTCTCGAACATCGTTGGGGTAACTTTACAGTCGACAAATTCGCT
AATTTTGACAATGCAAAATGCGAGAGGTTTAATTCCAAGTATGTTGTGCC
CGGTACAGAGGCTGTTGACGCCTTCACTCAAGACTGGCGCTTAGAGCGAA
ATTTATTAGTTCCTCCTGTCAGTCAGATTCCTCAAGTCTTACGCCTTTTA
AAAAGCCAACCAGGAATTAAAGGGGTGCTCGTCATACCTTTTTGGACAGC
GTCTTCTTTTTGGCCCCTTCTAAGAGAAGGGGATGAATTTTCATATTTTG
TCAAGGATTACGTTATTTTCGAAGACACGTCGAACTTGTTACGCCTTGGG
AGGTACAAATACTCTTTACTCGGTTCTCCACGATATAGAGGACGTATCAT
AGCCTTAGAGGTTATTAGTTGATTCAGAAGGATAGTCCTTATCACCTTAT
AGAAAGAAGCTGAATTAATTTTAACATGTATTTCTACACCCAAGGAAAAG
GGTGAGGCAGGGGTTGATTAGTGGTATCAACTGAGGCTGTTTTAATTTTA
ACATGTATTTCTGCACCCAGAAGAAGGGTGAGGCAGAGGTTGATTAGTGG
TATCAACCAAGGCTATATTAATTTTGAAATATATTTTCTACACCCAAAAA
GAAGGGTGAGGCAGAGGTTGATTAGTGGTATCAACCAAGGCTATATTAAT
TTTGAAATATATTTTCTACACCCAAAAAGAAGGGTGAGGCAGGGGTTGAT
TAGCGGTATCAACTGAGGCCAGAGTTTAGCGACTAGGTCGCTATGGCAGC
TTGGCTGCCGTAGCATAAAGTCAAAAATGCCTCATATTTACGACAAAATA
GTAATTTGCTCTTGCATTTCACTTATACCTTTAGCACAAGTCGCCCAAGA
CCTGTCTTCTCGTGTTGATGATCCACAGCTTAAAGAGCTCGCTACCGGAA
TCGGAGATATCCTGACGAAAGCTCGTGCAGAGAGTACAATTAACAAATAT
AGCTGCTACTTCAAAAAATGGGAAAGATGGTGTGCGACATTCGAAGAGGT
CCAGCCTTTTCCAGCCAAAGACTTTCACTTCGTTCTATATATCATCAGCC
TTATCCAGCTTGGCGAATCTTTCCACGTTATAGAATCTGTATTCTACGCC
GTGAAACATTTCCACAATGTGGCTTCGAAGCCAGATCCAACATCTTCTAC
GCTAGCCGAATACATCCTCGAAGCTGCAAAAAGAATCTGCCACAGAAAAA
GTTCGAAAAAAGAACCAATCACTTCAGATCACATTCGTAAGATCTTTCAA
TTGATTAATGGGGACCAGGCTAACCTGCTTGATTTGAGGAATTTTACCAT
TATCATCTTATCGTATGCTGGATTTCTACGTTATGATGAGGTTTCAAATT
TAATCTTTGGGGACATTCTAGTCTTTGAGACGTATATGAAACTATTCATA
GAAAAGTCAAAAACAGACCAACATCGTGAAGGGGCTTGGGTCTATATTGC
CAAATTAGATTCCCCCTTTTGTCCTGTTAAGACACTGCTTAGATTTACTA
AGAATGCAAACATAACCAACGATAATGAGTACCTATTCCGTGCCACTTCT
TTCTTTAAGAAAAAGGGCATTCATAAACTGAGAAATAAGAACAAACCCAT
TTGTTACTCAACGGCCAGGTCCGCTGTTTTGCTTTATATCAAGAGAATTG
GTCTTGACGTAAAACTTTTTGGACTCCACAGCCTAAGGAGGGGCGGAGCT
ACGGAAGCCGCTAACCGGGGAGTTAATGATAGACTTTTCCAGAAGCATGG
CAGGGGGGAAACCGCTGGTGTGAAGAACGGATATGTTCAAGAAGATATAA
ATAGTCTTTTGAAAGTTTCTCTAGGGCTAGGCCTCTGATACATACCTCTT
TCTCTCTGTGACAAGTTAC Coding sequence (CDS) from alignment at scaffold_420:44302..46920- >TCONS_00064664 ID=TCONS_00064664|Name=TCONS_00064664|organism=Clytia hemisphaerica|type=CDS|length=1062bp|location=Sequence derived from alignment at scaffold_420:44302..46920- (Clytia hemisphaerica)
ATGCCTCATATTTACGACAAAATAGTAATTTGCTCTTGCATTTCACTTAT
ACCTTTAGCACAAGTCGCCCAAGACCTGTCTTCTCGTGTTGATGATCCAC
AGCTTAAAGAGCTCGCTACCGGAATCGGAGATATCCTGACGAAAGCTCGT
GCAGAGAGTACAATTAACAAATATAGCTGCTACTTCAAAAAATGGGAAAG
ATGGTGTGCGACATTCGAAGAGGTCCAGCCTTTTCCAGCCAAAGACTTTC
ACTTCGTTCTATATATCATCAGCCTTATCCAGCTTGGCGAATCTTTCCAC
GTTATAGAATCTGTATTCTACGCCGTGAAACATTTCCACAATGTGGCTTC
GAAGCCAGATCCAACATCTTCTACGCTAGCCGAATACATCCTCGAAGCTG
CAAAAAGAATCTGCCACAGAAAAAGTTCGAAAAAAGAACCAATCACTTCA
GATCACATTCGTAAGATCTTTCAATTGATTAATGGGGACCAGGCTAACCT
GCTTGATTTGAGGAATTTTACCATTATCATCTTATCGTATGCTGGATTTC
TACGTTATGATGAGGTTTCAAATTTAATCTTTGGGGACATTCTAGTCTTT
GAGACGTATATGAAACTATTCATAGAAAAGTCAAAAACAGACCAACATCG
TGAAGGGGCTTGGGTCTATATTGCCAAATTAGATTCCCCCTTTTGTCCTG
TTAAGACACTGCTTAGATTTACTAAGAATGCAAACATAACCAACGATAAT
GAGTACCTATTCCGTGCCACTTCTTTCTTTAAGAAAAAGGGCATTCATAA
ACTGAGAAATAAGAACAAACCCATTTGTTACTCAACGGCCAGGTCCGCTG
TTTTGCTTTATATCAAGAGAATTGGTCTTGACGTAAAACTTTTTGGACTC
CACAGCCTAAGGAGGGGCGGAGCTACGGAAGCCGCTAACCGGGGAGTTAA
TGATAGACTTTTCCAGAAGCATGGCAGGGGGGAAACCGCTGGTGTGAAGA
ACGGATATGTTCAAGAAGATATAAATAGTCTTTTGAAAGTTTCTCTAGGG
CTAGGCCTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064664-exon-scaffold_420-1575043694:45686..46920 | TCONS_00064664-exon-scaffold_420-1575043694:45686..46920 | Clytia hemisphaerica | exon |
| TCONS_00064664-exon-scaffold_420-1575043694:44302..45531 | TCONS_00064664-exon-scaffold_420-1575043694:44302..45531 | Clytia hemisphaerica | exon |
| TCONS_00064664-exon-scaffold_420-1510915933:45686..46920 | TCONS_00064664-exon-scaffold_420-1510915933:45686..46920 | Clytia hemisphaerica | exon |
| TCONS_00064664-exon-scaffold_420-1510915933:44302..45531 | TCONS_00064664-exon-scaffold_420-1510915933:44302..45531 | Clytia hemisphaerica | exon |
| TCONS_00064664-exon-scaffold_420-1491911889:45686..46920 | TCONS_00064664-exon-scaffold_420-1491911889:45686..46920 | Clytia hemisphaerica | exon |
| TCONS_00064664-exon-scaffold_420-1491911889:44302..45531 | TCONS_00064664-exon-scaffold_420-1491911889:44302..45531 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_420 | supercontig | scaffold_420:44302..46920 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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