TCONS_00064428 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064428
Unique NameTCONS_00064428
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length554

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064428 ID=TCONS_00064428|Name=TCONS_00064428|organism=Clytia hemisphaerica|type=transcript|length=554bp
CTCTATCACATGACAAACATGTCAGTTGTCATGTTCACATATTTACTTAC
TTTTATACAATTTCAGATACCGAAAGACAAATATACCAACAGTAAATATG
CAAGTATAACAACATTCAAAGATTGTgtatacaaaagaaaaagagcCTTA
AATACTGACTTGAAAAGAGACACACCTGGTGCTGAACTGTTCGCTACGGT
GAACGCACCAgTTAACAACACGGTCATTGGAGCATCATGTGACGGTATGG
CATCTTCCATACAACTCAAGGTGACCACTGATCCACCACGATTCCAATGT
CATTGTGTTGGTTATACTCTTGTTAAAGGTCTTACGATGGAATGTTTGCT
GCATTACTGGTTATGCCCCAAGTATTGATGTAATGGGTCGAACACTGAAT
CTGAAACATTAAgacgttttgtttttaacaAAGCATCATCGTTTTCGTTG
CCAATCTAGAAAGACCAACCTCTTCGGCCTTGAATGGAATAATGAAGAAA
AGTTTCCAAGCTGTAgctaataaaaaatatatgtttcATGGGCTtgcctt
tttt
Run BLAST on NCBI

protein sequence of TCONS_00064428-protein

>TCONS_00064428-protein ID=TCONS_00064428-protein|Name=TCONS_00064428-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
LYHMTNMSVVMFTYLLTFIQFQIPKDKYTNSKYASITTFKDCVYKRKRAL
NTDLKRDTPGAELFATVNAPVNNTVIGASCDGMASSIQLKVTTDPPRFQC
HCVGYTLVKGLTMECLLHYWLCPKY
Run BLAST on NCBI

transcript from alignment at scaffold_415:9177..10250+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064428 ID=TCONS_00064428|Name=TCONS_00064428|organism=Clytia hemisphaerica|type=transcript|length=1074bp|location=Sequence derived from alignment at scaffold_415:9177..10250+ (Clytia hemisphaerica)
CTCTATCACATGACAAACATGTCAGTTGTCATGTTCACATATTTACTTAC
TTTTATACAATTTCAGATACCGAAAGACAAATATACCAACAGTAAATATG
CAAGTATAACAACATTCAAAGATTGTgtatacaaaagaaaaagagcCTTA
AATACTGACTTGAAAAGAGACACACCTGGTGCTGAACTGTTCGCTACGGT
GAACGCACCAGTAAGTTTAAGTTCACTCTCAATTAACAATCCTATTTACC
GGTAAAGCTACTCTATTGGCTAATTTTCGGCAATTTGCCAATCCATACTT
GGGTTGCTCGAGAAAGAAATTTCAGCCCCTATGTTGAGGATGTCTTTTTG
AAAGGTCAAACCCCTGTAGAATCGTGTCGAAATTTTAGATACCACCCTAG
ACCTtggattttatttcaaattttacagACGCGTGGATTTTTGTCTATTT
ATAACACTCTTTGGAGAGGGCCAGATTATTCCTATTAAAAAATCGTTGCT
ATGCTTTTTCAACTCTAATGATAAGCATGCTATTCCAAACTTCATGTTTA
ACTTTATGTACCACCGCAATGAGTTGAAGGATATTAGCGTAACTGTCCTT
TTGGGTTGTTTTCCTCGATATATCTGTAGTTTGTTGTAAGAATGGGGTTG
AAAACATTACAAGGATGAATAACAAATCATGTGAAGAAAAAAGAAGCATA
ATCTTACAAAacttctttgaattttttcaggTTAACAACACGGTCATTGG
AGCATCATGTGACGGTATGGCATCTTCCATACAACTCAAGGTGACCACTG
ATCCACCACGATTCCAATGTCATTGTGTTGGTTATACTCTTGTTAAAGGT
CTTACGATGGAATGTTTGCTGCATTACTGGTTATGCCCCAAGTATTGATG
TAATGGGTCGAACACTGAATCTGAAACATTAAgacgttttgtttttaaca
AAGCATCATCGTTTTCGTTGCCAATCTAGAAAGACCAACCTCTTCGGCCT
TGAATGGAATAATGAAGAAAAGTTTCCAAGCTGTAgctaataaaaaatat
atgtttcATGGGCTtgcctttttt

Coding sequence (CDS) from alignment at scaffold_415:9177..10250+

>TCONS_00064428 ID=TCONS_00064428|Name=TCONS_00064428|organism=Clytia hemisphaerica|type=CDS|length=756bp|location=Sequence derived from alignment at scaffold_415:9177..10250+ (Clytia hemisphaerica)
CTCTATCACATGACAAACATGTCAGTTGTCATGTTCACATATTTACTTAC
TTTTATACAATTTCAGATACCGAAAGACAAATATACCAACAGTAAATATG
CAAGTATAACAACATTCAAAGATTGTgtatacaaaagaaaaagagcCTTA
AATACTGACTTGAAAAGAGACACACCTGGTGCTGAACTGTTCGCTACGGT
GAACGCACCAgTTAACAACACGGTCATTGGAGCATCATGTGACGGTATGG
CATCTTCCATACAACTCAAGGTGACCACTGATCCACCACGATTCCAATGT
CATTGTGTTGGTTATACTCTTGTTAAAGGTCTTACGATGGAATGTTTGCT
GCATTACTGGTTATGCCCCAAGTATTGACTCTATCACATGACAAACATGT
CAGTTGTCATGTTCACATATTTACTTACTTTTATACAATTTCAGATACCG
AAAGACAAATATACCAACAGTAAATATGCAAGTATAACAACATTCAAAGA
TTGTgtatacaaaagaaaaagagcCTTAAATACTGACTTGAAAAGAGACA
CACCTGGTGCTGAACTGTTCGCTACGGTGAACGCACCAgTTAACAACACG
GTCATTGGAGCATCATGTGACGGTATGGCATCTTCCATACAACTCAAGGT
GACCACTGATCCACCACGATTCCAATGTCATTGTGTTGGTTATACTCTTG
TTAAAGGTCTTACGATGGAATGTTTGCTGCATTACTGGTTATGCCCCAAG
TATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040402XLOC_040402Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064428-proteinTCONS_00064428-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064428-exon-scaffold_415-1491911889:9177..9386TCONS_00064428-exon-scaffold_415-1491911889:9177..9386Clytia hemisphaericaexon
TCONS_00064428-exon-scaffold_415-1510915933:9177..9386TCONS_00064428-exon-scaffold_415-1510915933:9177..9386Clytia hemisphaericaexon
TCONS_00064428-exon-scaffold_415-1575043694:9177..9386TCONS_00064428-exon-scaffold_415-1575043694:9177..9386Clytia hemisphaericaexon
TCONS_00064428-exon-scaffold_415-1491911889:9907..10250TCONS_00064428-exon-scaffold_415-1491911889:9907..10250Clytia hemisphaericaexon
TCONS_00064428-exon-scaffold_415-1510915933:9907..10250TCONS_00064428-exon-scaffold_415-1510915933:9907..10250Clytia hemisphaericaexon
TCONS_00064428-exon-scaffold_415-1575043694:9907..10250TCONS_00064428-exon-scaffold_415-1575043694:9907..10250Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_415supercontigscaffold_415:9177..10250 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.38677	1.09585	5.15617	6.93128	5.71931	10.022	13.8962	4.94475	6.08686	5.18486	13.0126	13.5981	8.1057	8.9438	10.8969	12.2263	3.55604	3.78272	1.6507	2.57268	1.10408	5.6166	0.705029	0	1.8262	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064428 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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