TCONS_00064384 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064384
Unique NameTCONS_00064384
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1813

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064384 ID=TCONS_00064384|Name=TCONS_00064384|organism=Clytia hemisphaerica|type=transcript|length=1813bp
AAAGTTTGTTGATGAGGATTTTTGATTCGCAGAAAAGTTTTTCGAACTCA
AAGATTATTCATATTACTCAGACCTTTAGATCAGCAGTTTTGTTTGACAT
TGACGTGTCCATAAATCATCTGGGTTTAATTGGTAAGATTGTAAAAGTGA
AGAAGTGAAAAAAGTATGGTGATGGCACGAGAAAGTCCTGACTTGATTCG
CTCTGCGACTGCACCCATCTCAGCAAGCTCGCACGAATCTCGTAAAGAAA
ACAAGAAAGCCAAATCACTGACTGAGAGATTCCGCTCGAAGTTCAGTCGG
TCAAAAGGCTCATCACACACAGCCATCAAAGAAATCGACACCAATGAGGA
GATCACTTACGGGAAAATCGTTGTTTTAGGACAAGCCGGAGTTGGTAAAA
CGTCCTTCATTCATCGGTTGGTAAACAACTACTTCACAGATCAATACACA
CCCACCACCACAAGTTCCAGTTTCGAAGTCACCGCTATCGTCGAATGTGA
AGACCTTTTCAAAAGCAAGAAAGAAAGATTCATTGATTACGCAAAATCTG
TTCGAAAAGTTAAGAGTTTCTCACGTACGACCATCAGTCAACAGTTAGCA
AAACAACAATGTAAAACAAAGACCTTCAAATTTCAACTGGTGGATACAAC
AGAAGACATCAATGAATCATCACCCATGGAATATCGATCGACAGTCGCCA
ATGCTCATGGATTCTTACTGGTCTGTTCGTCAGACAAAGCAGACAGCATC
CAATACATCCGTGATATTTACCAAGACATCGCCAAGATGAGAATCAACAC
TACAGTCCCTGTTCTCATCATCCAAAATAAGGATGATCTACACGCAGGTA
GCGAAGAAGATGAGACTTTCGATGCCGAGTTAGAGCAACTGGCAGTAGAG
TTGGACGTTGAAACGTGTCTCCTATCTACCGCTAACTCCAGTGGCTTCGA
AAATTTAACAGAACTTTTATTGAATGAAATGAACGTGTACAATGATGATT
GTCGGGTTGAAATGGCTTTACCTGATGAAGTCGCTTACTGTGACCAATCA
GATGATGAATTAGAAACAGGGCCGAAAGTGATCACTAACAGAAACGCAGC
AGGAAAAATGAGACGGATGCGATCAAGCGTTAATTGAGAGAAATTGATGG
TTTGAACCAAACGGTGTGGTTTCACAAGAAGAAGGGAAAGTTGGCAACGA
AAGCACTTTTCCTTCAAATACACACATCCCCAAAACAATTTCTGTTTACG
GATAAGATAGAAAGTTAATCGACTTTTGGTAATTAAGATAATGACAGTCA
TTTACGCAGATTGGTCACCATGGTGACTTGTGGCATGACATTGCATCTTT
TCAGGAAGTTAGATGGATATGATGATCTAGTGAAATTCATTAACAGACGA
CCGACAAATCCTCCTCTTTGTgcgaaagaagaagaagaaagatctCTTCT
CCGTGGAAGAAGGCCGACTCACTGGACAACTATCAAACATTCAAGAGTTA
CGTTACACCTTCTGCAAAACAAAGATACAAcctctttttaaactttaaaa
ccaaAAAACAATAATGGCCTGATGAAAGGCAAAGTACAGGAAGGAATTTC
TTCAGAGTGGAATTATCATTTTATTGTCTCGTTTCGACCACGCAGGTGTT
TCCTGTCGTTTTTATCGATTCCTCATTTGATCGCAATATTGGAGTCGTTT
TCTCATGTTTTATAATGTAATATAAAttgtaaatataaaaacaattgTTT
TCTGTCTGAAATTTAAGTAAcaaatgaaatattgaaatgaattttacaat
ACAATTAAAAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_412:130140..132531-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064384 ID=TCONS_00064384|Name=TCONS_00064384|organism=Clytia hemisphaerica|type=transcript|length=2392bp|location=Sequence derived from alignment at scaffold_412:130140..132531- (Clytia hemisphaerica)
AAAGTTTGTTGATGAGGATTTTTGATTCGCAGAAAAGTTTTTCGAACTCA
AAGATTATTCATATTACTCAGACCTTTAGATCAGCAGTTTTGTTTGACAT
TGACGTGTCCATAAATCATCTGGGTTTAATTGGTAAGATTGTAAAAGTGA
AGAAGTGAAAAAAGGTTGGTATGTTTCTTTTAAAGAAATTATATTTGAGA
GTTTTATTAAAGTTCCTTGTTGAGAGGTAGCTTTTCATATCATTTCAGTT
TATTTTAATTATAGAAAGCCGATTTGAATTTGAATAAAAGTAAAAGGAAT
CAATATAGAAAACTCCGTGGACGATAATATTTGGCATCAAATTACTACAA
CTCTAACAACAATTTCAAAGGATGTGACATTTAGTTTGAATAATATAATT
AAATGAGTAGTCTTTTGTTTGACGGAACAATGAAAAAGAACGCAGCAAGC
ATTGTTCTCAAATAAGGAGCTCATTAAAACATTGAGAAATTTCATAAACA
ACCACATCAACAACAAAATTGATTTAATCTCAAACCTTTCTCTTGAACAC
ACACGACACAGCGTTTTTTTATAACTGTTATTTTTTCAGTATGGTGATGG
CACGAGAAAGTCCTGACTTGATTCGCTCTGCGACTGCACCCATCTCAGCA
AGCTCGCACGAATCTCGTAAAGAAAACAAGAAAGCCAAATCACTGACTGA
GAGATTCCGCTCGAAGTTCAGTCGGTCAAAAGGCTCATCACACACAGCCA
TCAAAGAAATCGACACCAATGAGGAGATCACTTACGGGAAAATCGTTGTT
TTAGGACAAGCCGGAGTTGGTAAAACGTCCTTCATTCATCGGTTGGTAAA
CAACTACTTCACAGATCAATACACACCCACCACCACAAGTTCCAGTTTCG
AAGTCACCGCTATCGTCGAATGTGAAGACCTTTTCAAAAGCAAGAAAGAA
AGATTCATTGATTACGCAAAATCTGTTCGAAAAGTTAAGAGTTTCTCACG
TACGACCATCAGTCAACAGTTAGCAAAACAACAATGTAAAACAAAGACCT
TCAAATTTCAACTGGTGGATACAACAGAAGACATCAATGAATCATCACCC
ATGGAATATCGATCGACAGTCGCCAATGCTCATGGATTCTTACTGGTCTG
TTCGTCAGACAAAGCAGACAGCATCCAATACATCCGTGATATTTACCAAG
ACATCGCCAAGATGAGAATCAACACTACAGTCCCTGTTCTCATCATCCAA
AATAAGGATGATCTACACGCAGGTAGCGAAGAAGATGAGACTTTCGATGC
CGAGTTAGAGCAACTGGCAGTAGAGTTGGACGTTGAAACGTGTCTCCTAT
CTACCGCTAACTCCAGTGGCTTCGAAAATTTAACAGAACTTTTATTGAAT
GAAATGAACGTGTACAATGATGATTGTCGGGTTGAAATGGCTTTACCTGA
TGAAGTCGCTTACTGTGACCAATCAGATGATGAATTAGAAACAGGTAAGC
ATCATTGAAATCTTTTCTGTTTCACTGAGTTTTAGTATTAAGCAATGTAA
AAAGACGTGAATGGAAGAAGTGAAATACCTCCCTACTTTCTTTCCATATC
TCTTATATTGCATCACTTATAAAATATTTCTCTTTTTCTCATCATCAGGG
CCGAAAGTGATCACTAACAGAAACGCAGCAGGAAAAATGAGACGGATGCG
ATCAAGCGTTAATTGAGAGAAATTGATGGTTTGAACCAAACGGTGTGGTT
TCACAAGAAGAAGGGAAAGTTGGCAACGAAAGCACTTTTCCTTCAAATAC
ACACATCCCCAAAACAATTTCTGTTTACGGATAAGATAGAAAGTTAATCG
ACTTTTGGTAATTAAGATAATGACAGTCATTTACGCAGATTGGTCACCAT
GGTGACTTGTGGCATGACATTGCATCTTTTCAGGAAGTTAGATGGATATG
ATGATCTAGTGAAATTCATTAACAGACGACCGACAAATCCTCCTCTTTGT
GCGAAAGAAGAAGAAGAAAGATCTCTTCTCCGTGGAAGAAGGCCGACTCA
CTGGACAACTATCAAACATTCAAGAGTTACGTTACACCTTCTGCAAAACA
AAGATACAACCTCTTTTTAAACTTTAAAACCAAAAAACAATAATGGCCTG
ATGAAAGGCAAAGTACAGGAAGGAATTTCTTCAGAGTGGAATTATCATTT
TATTGTCTCGTTTCGACCACGCAGGTGTTTCCTGTCGTTTTTATCGATTC
CTCATTTGATCGCAATATTGGAGTCGTTTTCTCATGTTTTATAATGTAAT
ATAAATTGTAAATATAAAAACAATTGTTTTCTGTCTGAAATTTAAGTAAC
AAATGAAATATTGAAATGAATTTTACAATACAATTAAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040369XLOC_040369Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064384-exon-scaffold_412-1575043694:132368..132531TCONS_00064384-exon-scaffold_412-1575043694:132368..132531Clytia hemisphaericaexon
TCONS_00064384-exon-scaffold_412-1575043694:131038..131942TCONS_00064384-exon-scaffold_412-1575043694:131038..131942Clytia hemisphaericaexon
TCONS_00064384-exon-scaffold_412-1575043694:130140..130883TCONS_00064384-exon-scaffold_412-1575043694:130140..130883Clytia hemisphaericaexon
TCONS_00064384-exon-scaffold_412-1510915933:132368..132531TCONS_00064384-exon-scaffold_412-1510915933:132368..132531Clytia hemisphaericaexon
TCONS_00064384-exon-scaffold_412-1510915933:131038..131942TCONS_00064384-exon-scaffold_412-1510915933:131038..131942Clytia hemisphaericaexon
TCONS_00064384-exon-scaffold_412-1510915933:130140..130883TCONS_00064384-exon-scaffold_412-1510915933:130140..130883Clytia hemisphaericaexon
TCONS_00064384-exon-scaffold_412-1491911889:132368..132531TCONS_00064384-exon-scaffold_412-1491911889:132368..132531Clytia hemisphaericaexon
TCONS_00064384-exon-scaffold_412-1491911889:131038..131942TCONS_00064384-exon-scaffold_412-1491911889:131038..131942Clytia hemisphaericaexon
TCONS_00064384-exon-scaffold_412-1491911889:130140..130883TCONS_00064384-exon-scaffold_412-1491911889:130140..130883Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_412supercontigscaffold_412:130140..132531 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.464292	0	0.271417	0.265539	5.49556	4.08722	11.7113	17.3115	15.8839	20.5175	8.25734	18.1999	21.0443	23.6759	15.1091	15.0458	12.4167	7.14471	23.1888	22.3988	4.86233	3.05232	2.19882	3.99808	4.3753	2.98607	16.7635	7.32837	0.943107	0.542155
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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