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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064248 ID=TCONS_00064248|Name=TCONS_00064248|organism=Clytia hemisphaerica|type=transcript|length=413bp GATGGAAGTGAAACCGTGTTAAATCTTGGTGTATATCTCTCCTTATTGGA TCGTGTCATTCGTAAATATAAAGATCCATTACAATTTACCATCAAAGACG AAGAATATTGTTCAGTGTTACGTTTGGTGGCCACCAAGAGATgtttaaag aaagaaacgaCTGAAGAATGTTATGAAAGATTACTTAAAGATAGTgaaga atttgagaaaatataCCATgaaagaaaagtTCTTTCAGAGgttttgaaaa acgaagatttttgggGCACACGACAGCAACTATTATGTGGTAAAGTCATT TCagattggattgacacagatcATTTACCCATCGATCCTATATTCGGTGC TTTGTTATGTCCTTGTggagGTCGAGTTGGTCCTGGTGATAGTGGATGGG TGCACAATTTACT Run BLAST on NCBI protein sequence of TCONS_00064248-protein >TCONS_00064248-protein ID=TCONS_00064248-protein|Name=TCONS_00064248-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
DGSETVLNLGVYLSLLDRVIRKYKDPLQFTIKDEEYCSVLRLVATKRCLK KETTEECYERLLKDSEEFEKIYHERKVLSEVLKNEDFWGTRQQLLCGKVI SDWIDTDHLPIDPIFGALLCPCGGRVGPGDSGWVHNL Run BLAST on NCBI transcript from alignment at scaffold_41:815174..823088- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064248 ID=TCONS_00064248|Name=TCONS_00064248|organism=Clytia hemisphaerica|type=transcript|length=7915bp|location=Sequence derived from alignment at scaffold_41:815174..823088- (Clytia hemisphaerica) GATGGAAGTGAAACCGTGTTAAATCTTGGTGTATATCTCTCCTTATTGGA
TCGTGTCATTCGTAAATATAAAGATCCATTACAATTTACCATCAAAGACG
AAGAATATTGTTCAGTGTTACGTTTGGTGGCCACCAAGAGATGTTTAAAG
AAAGAAACGACTGAAGAATGTTATGAAAGATTACTTAAAGATAGTGAAGA
ATTTGAGAAAATATACCATGAAAGAAAAGGTAAAATACAGCGTGTCCCAA
AATGTTTTTAGATAAAGTAATATGCCATATATACTTTAAAGATTGAAAAT
ATTCCAATTTCAAAAACCTATTCAATCATCTTAGGAAATGAATATCTATT
GATTCAACATCTAATTGTAATCTTACTTCCATCGCGTTCTAACCCCAGTT
ACTGTGAGATGATGAGTTTTCAGCACTTTACATACTTTACAGATTTGTTC
ACTCTTTTTTGGGACACACTCAAACAAGGCTTTGAATATAATATACGCTC
TAAAGATCTGATGATGATGAAACAAATGCTGAAAAAGAGAACATCTTTAG
GGTCTTGACGTTCTTGTAAAAGTCATAAACGTATATTATATTTTTCAGTT
CTTTCAGAGGTTTTGAAAAACGAAGATTTTTGGGGCACACGACAGCAACT
ATTATGTGGTAAAGTCATTTCAGATTGGATTGACACAGATCATTTACCCA
TCGATCCTATATTCGGTGCTTTGTTATGTCCTTGTGGAGGTATTTTTCAA
AACTTTTTGGATGGATCGTTCATTTACAAATCTGAACAGAGTCCAAATAA
CTTAAAACTTGTGCGGAATTTTTTGAAAGATTCTTAAGATATGTAACCCT
TATTATATATATAAGTCCTAATAAGGACGAAATGCATATGCTGCTTTGCC
ACCCAAATCACCCAAATAATTTAATAAGGGAATTTCCCTGCTGTCCACTA
ATTTTCTCAGTTGGAACCACAAGTGCTTTTGTGGTTTAGCATGGTGGCTA
AATCGACCTAGCCAGCCAGGGTGCAGCATGTAGTGCTGACGAGTCCTAAT
AAGGAAATGCATATGCTGCTCTGTCACCCAAATCTCCTGAGTGAATATAG
TTGGACAGAAATTCTTCTTTCTTCACACCATATGTATTCCCCAAATGGAC
CACAAGTGGTTATTTGGCAGAAAACACCTAGAAGCTTGCTAGCAATCCTC
ATAATTTTAGTCCTTGTGAATTTTGGACTTCCAATGACTGAAAATGGATG
AACTTGAGCCACATAGGTCGTTGGTGCACCAGAGAGCTTTAAACAGTTGT
TTATAATTGATTAAAGGTTTTGTTTTGATTGAAAGGTCTGATGATGCTGA
TGTAGTAAAAACAAGTGCGACAAGATTAGAAAAAGGTTTTGAAAAAATGA
AAAAACAAAGGGACTTTTACCAGCTTTTACTGATACTCTTTGAATGTTTT
TATGTTTTATAATAAATAGAAAGTTTTCTATCTTATAATCAAAACATTCG
ACTGTAAATTTGCTCGAAATCAACTTTGCCATTCTTTTGGTTACAAAAGC
AATAGAATGTGAGGTCACATCTCGAAACAACTTTCGATCTTTCACTTGTT
TGCAAGATATCGTTGTGTAAAAAAATAGCTTTAATTTATCTGACTCAGAA
TGAAGACACTGCCTAAAATAAGCTAGAAAACCATCTCAAATATCTTCTAA
TAGATGTCTTCTCGAAAAAGTTGAAGAGCAAAACTCATTGAACCTTCAGT
CTTCAATCTCAGACAAAAAAAATAGCCTGAAGACTTTGCAAAAATTCATT
TCCTTCAATGTCCAGTGATTTGGCTTCTGGAATTGTCACCCAAACTCTCC
AAATCCAATAAAAACAACATAGGCCCTGGTAAAAATGGGTTTTCAGAGCT
TATTTTGAAATTTTTCATGCATTTGAAAAGTTTTCAACCTTTTGTCCGAG
ATTGCAGTAGCATTATTTTGGTTTGTTAATCATCATTATCTACAAATATT
TTCGTGAGAAGATTCGGACTTTATGGACAATGTCTTTTTTGGCTGTACGG
AAATCTTTTTGAGAAATCCTTGAATTACTATGGATAAATTTTAAAATATT
TTTCGTTCATTTTTAATAGGATGGATTTGCTTTCACTTATCATCAAATCC
GACGAAAGGATGCGTACGAATCTATATGAAAAGGTTGAACTATTAGAAAA
GGTACGAAAATTTTGAAATTTGATTAATAATAATTACTAGAAACGACTTT
ACTGCAGGCCTGTTTAACCAGCACATTTCAGGGCCAAGGCCATTCTGGTG
CCAGGAGGGGAAATGGCACCTATCTTTTTTTTCAAATAAAAAGGTGGGGA
TTTTTAAGATTTCACAATTTATACTTCAATAGCTTTATTTCTGGACAAAA
TCAGACTGAAATAGGGCTATTTTAAGATCACATTCGCAATTTTCTACGGT
TGCGCCTCTTTAGTCGTTATATTTCTGACTCCTCTAATTTTCAAATCATG
GCCTGGGCCCTGAGTTTCCTTAGATCAGGGAAATCTGCACATCCTCGACC
AATCAATTTTTTTTGTGGTCAGAAATGTACTCTTAGGTTCCAAATAAACG
CCCCCCCCCCGCTTGTTAATTTTTCGAAAATTTTCCAATCCCCCGGATCT
TATTAGGACCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTACTTCATTAAGAAGTT
TTGTAAATAAATTATACCAATGATGTTAAAATGGAATTTTTCAAGATTTT
TATTGTGATGTATTTTTGTAATTACTAGTTCGTAGATAGCACTTTTTTAT
TTTTATAAAACAATACAGTACCCCTAGGGTATAACAATTAATTAATAATT
TACTTATTAATTATAATATCTAGAGAAGAAAGATAAATTCATGGCAGATT
TTCGAATGTTATCCCTGAGTGATTGGTTAAATCTAAATTGCTTGTAGAAT
TGCCTCATAATCCAGTTATCTCATTTTGAAATGCTCTGTGCTAAAAAATT
CAAACATTTTGAAATCTTTTTAATTTTTTTCACTTTCACTTTCTTGTATA
GAGGCTATTTAAACACAAAAAATCCCCCAAAGATTTCACACCATCTTGGC
ACTAAAACTGATGTCATCTTTGTTCTTTCTCTTTTTGTTTTCAAAAGATT
CGGTTATTTATTTTGAATTTTGAATTTTTGAAATTTTGATTTCCTGAGTT
CCTCATCTTATATTATATTCACGAATTTGTTCTATATTCATTTCTTAGAA
GCTCTTTTGAATTTTTTTTCCTGTCATCATTTTGCTGTGTTTTGCACTTT
GATTAGTTTATGTAGTTTGATTTAATCTAGTTTTTGATGAAAGTTTATAT
CAAAGTCTTCTTCCCAGCTGGCACAACAGTGTATATCCAGCAGACACACA
ACGTTGTTTCAAGGTTTATCTGACGTTCATAATGTCCATATAACGTTAGA
TGAACGTTGAAACAACGTTGTGTGCCAGCTGGGCTGTGAAAAAACCTTCT
AGCTAAAAAAAATTTCAAACATCAATCAGCAAACATTCAGTAAACTCACA
AGCCCAGAGCTGCGTCAATGAAAAATTGTAGTTCGAGGCTTCAAAGCTTA
GATTTAGAAGAAGTGAACAATGGGTTTGGAGCAAAAGAATAAAATGACAA
CAAACGAGAAAATCAGCATTACCATTGAAAAGAAAGCAAACGCCAGTGAA
GAAGAAAACATTGAAGAACTTTCAGAAAATCAACTCCGACAAATTATTGC
TCGTCAGAAACGTCGTTCTTCTTACATCGTTGAAGAAATTGTCAATTATT
GTATTCCATTGGTCAAAGTTGAATTTGCTGGCCAATCGAACACAACTAAA
GTAAGTACTCTTAGGTTCCAAATAAACGGGGGAGGGAAAAATGTTCAAAA
TTTTAATAAGCAGGGGGGGGCTAATTGCCGGGGGGTTAGAAATTATGATT
ACGAAAACCCAAATATAAGGTAAATATAGGCTAAAATCAGGCTATTTAGA
GCAGAATGAGGGACCTCTTTGAAAGCTGAAAAAATTCTTAAAAACTAAAA
AGGTCCGGGTGGGGTTGGAAAATTTTTTGATGAATTAACAGGGGGGGGGG
GGGCGTTTATTTGGAACCTAAGAGTATAGTAAATTTACCACCACTTTTCG
CTCTAGACCCCGACTCTACAATCAGTGCCATAACATATTGGCACTTTTGG
CTAATTTACCATTTTTCGAAAATTGAAGTTCGAACGAGAATGTCAATTTT
GGGCCTTTAACTTGATTGCAACGATTATTTCGATCTGGGAGGGATGTATT
GGTTTCTAGGCTAGATTTCAAGCCCTACTGGACCATTTTTGAACTTTTGG
ATCCTGGACTTATATTCATTACGTAATGTTTTATACGGAATCACGCAAAA
TAGCCCAGAGGTCTTCCACTAGTATTATTCAAATTCAAATTGACTGGCAA
ACACCCAGTCTTTCCTGGTTGAGTCAATTAAACCCAAAACCATTTATACC
AGTCTAAAGCTCTCAAAATGCTATAGAGGACTTTTAAGTGGATATTAACC
TATTTCAAGAAAATTAACGCCAATTTTGCGTTTTAACGTCTTTTCCAGTC
GATGATTTACTTAAGGAAACACTCTTGCAAAAAACTTTTTAAATACTTCA
TTCTTTGAAATAATGGACCAGGTTTGGCTGTGTCGCATAAAAAATGCCAC
GGATCCTAAAGGTTTGTCCCTTACTAAATGCATTANGCATAAAAAATGCC
ACGGATCCTAAAGGTTTGTCCCTTACTAAATGCATTTAATTATTGACATC
ATTATCTTTTGCTCCTTACAACAACAGAGTGACGAAACTGATGGAAGTGA
AACCGTGTTAAATCTTGGTGTATATCTCTCCTTATTGGATCGTGTCATTC
GTAAATATAAAGATCCATTACAATTTACCATCAAAGACGAAGAATATTGT
TCAGTGTTACGTTTGGTGGCCACCAAGAGATGTTTAAAGAAAGAAACGAC
TGAAGAATGTTATGAAAGATTAATGAAAGATAGTGAAGAATTTGAGAAAA
TATACCATGAAAGAAAAGGTAAGATACAATGTGTCGCAAAAAAGAGGACA
GATTTTTAAATAAAGTAAAATCCCTATAACTTATGCCAAATTTTATGACA
TTCCAATCTCAAAAAACTATTCAATCATCTTGGGTATTGAATAGCTATTG
ATTCAACATACCATAAAACCACTTTTTCGACCGTAGCCGCCAATTGCCGC
ACGGACATTCTTTTGTCCGTTTTACCACCCTAAAACAGTTCCAGTCTTTT
TTCGCACCTATAGACAATAGAAGAAGGTGTCAAAAAAGGATTGGATCGAG
TTTAGGGGGATGATTATATAATTAAGTGGTACGCGTCTGACCGCATCAGC
GCCACTACAGTCGAAAAGGTGTTTTGTAATCTTACTTCAATCGTTCTAAC
CACAGTAACTGTGAGATGATGAGTTTTCAGGATTTTACATACAGTTGACG
CTCTCTAATTCGATTTTCAAGGGGAATCGGATTTTCATCGAATACGGGAG
CGTATCGAATAGTAGGAAGTCTCCCTAATCCGANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTAGGAAGTCTCCCTAATCCGATAA
ACACGAGGTAAATATCGAATTATAGAGCTGAGAAAGAAAAATATAAGCGA
GACTCGATTGGTTTGAACGCGAATCAGGAAAAATGTCTAAGTTCTTGCTG
AAAATCTAAGTTCTTCGGAAGAAAACTTTCGATATCTGCCTGTTTTGAAA
AGTTTTCAGGAATCGAATTTCGAAATTATAATTCAAACGCAAAACAATCG
AAAATTTGAATTTCGAACTCCGTCCTAAAGGCCTTTTTACACGCTAGAAA
TCGAATAAGAGAGCGAAAAACCTGCAAGGGACTTCAAATTTTCATNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
AAATTTTCATCGAAAACGGGAGCTTATCGAATAATAGAATGTCGAATAGT
AGAGCGTAGTTTATGAGAGTTTCTTAAGGAAATTTGACGGTGACTTTCAA
TTGGATCGAAAACGGGAGCTAATCGAATAGTAGAACGTCGAATTAGAGAG
CGTCCACTGTACTTTATAAAAAAATTGTCCAACTCTTTTTGGGACAAACT
ATGCACTGTACATTAACTCGAACAAGGCTTTGAATATGATCTGTACGCTC
TGTAAAAACATTCTAAAGATCTGATGATGATGATGATGATATAAAAAAAT
GCTGAAAAAGAGAACGTCTTTAGGGTCTTGACGTTCTTGTCAAAGTCATA
AACGTATATTATATTTTTCAGTTCTTTCAGAGGTTTTGAAAAACGAAGAT
TTTTGGGGCACACGACAACAACTATTATGTGGCAAAGTTATTTCAGATTG
GATTGATACAGATAATTTACCCATCGACCCTATATTTGGTGCTTTGTTAT
GCCCTTGCGGAGGTATTTTTCAAAACTTTTTGGATGGATCGTTCATTTAC
AAATCTGAACCGAGACCAAACTGAATTTTTTACTAAAATTAAAGTTTCTC
TAAAAGAGTTATTAAAGATTCTTACATATGTAACCCTCGCCTGCATTTTT
TTTCAGTTTCTAAAAGTCCATCAATAATCTATCGATTAAACGGTCAGTAA
TGTATTCTTATCCTTTGTGTTGAAAGTACACTTTGGTTTTCTTTCTTAGA
AGTTATGTTTTGTAGAAAACAGTTTTCAAGTTTTTGAAGAAGAAAATGAT
TTTTTCATACCTACCATAAGTATAGGAACCTAAAAAGTAGAGGTTTCATG
ACCTTAAATTCAATGGTGTAATCTCTAGGTCCGAAAAACTTGATTTTGAA
GGGATTTTTGATAGAGTTCTCAATAATATCGAATTTTACGACACTTTTCC
ATAATTGAAATTCTCGAAATCAGGTATTTTATGAAAGTACATTTATAAGA
AATTGATGGTTAACAGAATCCATTTTTGTTGGTTTTAAAGGGTGTGGTTT
TAAGAGGGGTATCCACTTGTACTTGTTGACAAATAAATGTATAATTTTCA
ATAACTTATCAATAAATTCCAGGTCGAGTTGGTCCTGGTGATAGTGGATG
GGTGCACAATTTACT Coding sequence (CDS) from alignment at scaffold_41:815174..823088- >TCONS_00064248 ID=TCONS_00064248|Name=TCONS_00064248|organism=Clytia hemisphaerica|type=CDS|length=1233bp|location=Sequence derived from alignment at scaffold_41:815174..823088- (Clytia hemisphaerica) GTCGAGTTGGTCCTGGTGATAGTGGATGGGTGCACAATTTATTCTTTCAG AGGTTTTGAAAAACGAAGATTTTTGGGGCACACGACAGCAACTATTATGT GGTAAAGTCATTTCAGATTGGATTGACACAGATCATTTACCCATCGATCC TATATTCGGTGCTTTGTTATGTCCTTGTGGAGGATGGAAGTGAAACCGTG TTAAATCTTGGTGTATATCTCTCCTTATTGGATCGTGTCATTCGTAAATA TAAAGATCCATTACAATTTACCATCAAAGACGAAGAATATTGTTCAGTGT TACGTTTGGTGGCCACCAAGAGATGTTTAAAGAAAGAAACGACTGAAGAA TGTTATGAAAGATTACTTAAAGATAGTGAAGAATTTGAGAAAATATACCA TGAAAGAAAAGGTCGAGTTGGTCCTGGTGATAGTGGATGGGTGCACAATT TATTCTTTCAGAGGTTTTGAAAAACGAAGATTTTTGGGGCACACGACAGC AACTATTATGTGGTAAAGTCATTTCAGATTGGATTGACACAGATCATTTA CCCATCGATCCTATATTCGGTGCTTTGTTATGTCCTTGTGGAGGATGGAA GTGAAACCGTGTTAAATCTTGGTGTATATCTCTCCTTATTGGATCGTGTC ATTCGTAAATATAAAGATCCATTACAATTTACCATCAAAGACGAAGAATA TTGTTCAGTGTTACGTTTGGTGGCCACCAAGAGATGTTTAAAGAAAGAAA CGACTGAAGAATGTTATGAAAGATTACTTAAAGATAGTGAAGAATTTGAG AAAATATACCATGAAAGAAAAGGTCGAGTTGGTCCTGGTGATAGTGGATG GGTGCACAATTTATTCTTTCAGAGGTTTTGAAAAACGAAGATTTTTGGGG CACACGACAGCAACTATTATGTGGTAAAGTCATTTCAGATTGGATTGACA CAGATCATTTACCCATCGATCCTATATTCGGTGCTTTGTTATGTCCTTGT GGAGGATGGAAGTGAAACCGTGTTAAATCTTGGTGTATATCTCTCCTTAT TGGATCGTGTCATTCGTAAATATAAAGATCCATTACAATTTACCATCAAA GACGAAGAATATTGTTCAGTGTTACGTTTGGTGGCCACCAAGAGATGTTT AAAGAAAGAAACGACTGAAGAATGTTATGAAAGATTACTTAAAGATAGTG AAGAATTTGAGAAAATATACCATGAAAGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00064248-exon-scaffold_41-1575043694:822860..823088 | TCONS_00064248-exon-scaffold_41-1575043694:822860..823088 | Clytia hemisphaerica | exon |
TCONS_00064248-exon-scaffold_41-1575043694:822350..822490 | TCONS_00064248-exon-scaffold_41-1575043694:822350..822490 | Clytia hemisphaerica | exon |
TCONS_00064248-exon-scaffold_41-1575043694:815174..815216 | TCONS_00064248-exon-scaffold_41-1575043694:815174..815216 | Clytia hemisphaerica | exon |
TCONS_00064248-exon-scaffold_41-1510915933:822860..823088 | TCONS_00064248-exon-scaffold_41-1510915933:822860..823088 | Clytia hemisphaerica | exon |
TCONS_00064248-exon-scaffold_41-1510915933:822350..822490 | TCONS_00064248-exon-scaffold_41-1510915933:822350..822490 | Clytia hemisphaerica | exon |
TCONS_00064248-exon-scaffold_41-1510915933:815174..815216 | TCONS_00064248-exon-scaffold_41-1510915933:815174..815216 | Clytia hemisphaerica | exon |
TCONS_00064248-exon-scaffold_41-1491911889:822860..823088 | TCONS_00064248-exon-scaffold_41-1491911889:822860..823088 | Clytia hemisphaerica | exon |
TCONS_00064248-exon-scaffold_41-1491911889:822350..822490 | TCONS_00064248-exon-scaffold_41-1491911889:822350..822490 | Clytia hemisphaerica | exon |
TCONS_00064248-exon-scaffold_41-1491911889:815174..815216 | TCONS_00064248-exon-scaffold_41-1491911889:815174..815216 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_41 | supercontig | scaffold_41:815174..823088 - |
Blast
The following BLAST results are available for this feature:
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