TCONS_00064085 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064085
Unique NameTCONS_00064085
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1762

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064085 ID=TCONS_00064085|Name=TCONS_00064085|organism=Clytia hemisphaerica|type=transcript|length=1762bp
TGACGAGATTCTTACTTGATTTTTACaaaGCAACATCCCACGACTTGGCG
ATTACCGACCATTCGCGCCACATGCTCAAGTCATCAGTCGAAACGAGATC
AAAATAAAATGGCTGCCAGCAAGATTAAATCACAACGACCTTGTTATTGT
GTATGAACTTTACAGCAATCAAGATCTTGAATACTTCGGACAAGATTTGG
TCCACGTTGCAAAGCGTCTCCAGCATGGTAGAGAATATAAGTTTCAATTG
AGAATCTGCAATGCAATGTTACCGAATGACTGTTCTCAATTCTCTTTCCC
AAGATATCAGAAGTTGACAGACATGGAGTTAATAGAGGAAGGCGAAATGA
TGAATTATCAGAAGAATCCGATGAAAGAACACTATATCCTCATATTGCTC
CTTTCAATGTTTTTTACAACCGTTCTACTTGTTGGATTGATGGTATTAAA
GTATCTCAGTTACTCATTTGATGGAATTACTTTCGAActatcgaccaatc
aaattcccGCTCGCAAAGATCATCCATACATCTTTCTTACcaataaaaac
acaaaacaaacaaactcgATACCGATCATTCGAAACCAACCGAAAAGTTC
CAAAACGACCGTCAATGTAAAGAACAATCTACACGACGACAAAGAAGAGC
AAATATCAGTAGCTGCGAGCAAAAAAAGTGCAGAATTAGTAGAAGAGGGT
CGTAGTGCGAAATCAACCTCACCGAATGTCGAGAACGTGAGCACAAAAGA
TCACAAAGCATCCTTTGAATCAAATAATGGCAAAGGTTGGATAACAGCAT
CTCCTAAACATCACACGAGAAAACACCAACGAAAGAGAAATCGAACTTTA
AGTTCAGGTGATAATCAAGGAAGCAAAACCGCACCTACTATTTGCGACAG
TCCTCTTAACGCTGGACTAGACAAACATCAATTGTCACACAGTAGATCCA
ATTCGTTCTCTGGAGGAACTGAAGATACCAACTTTCCGAAAACGGAAAAA
AACTTTGTTTCAGATTCTATTGTTGTGGTAGTTGACAATAGCAACGTCTT
TATCGGCGCACGTGAAACAGTTTGTATCGCACATGCGCAGCAAATAAAAC
CAAAACATGTTAAATTGCGTCTTCAACAATTGCTGAGTGTAGCAGAGAGC
GGACGAAAGGTGACACGCGGTTTCACGGCGGGCTCGTCACCACCGGCTTC
TGAACAAGTATGGGATGTGTACAGacGTCATGGTTACTTAGTCGATCTGG
AAGAGAGACGAGGGAAAGATGAACAAAGAGTGGACGAGCAATTGCACCTG
GCCATTTACAAGGCACTTGTTGATCTAAAACCACAGACACTTGTACTCGT
CACGGGAGACGGACACAAAGGAAAATCACGCGGCGACACAAGTTTTATCA
ATTGTGCAGTGAAAGCTGTACAACTAGGATGGAACGTTGAAGTTTTGTCG
TGGAAACACAGCCTTAGTACGGAATGGATGAAGGTTGCATCAAAACATTT
AAATAAGTTCAAAATCATTAATCTAGACGACTACATTGAAGTGTTGACAC
AAATCGAACGTCGTCATTCCAAAAAGAGGATAGATATTCGCACAGGCTAG
TTCCTATGATGAGCTGTCTGCAGTAGCCCTCTCTCGTGTAAATAGTGTAT
ATAGATATAATATAAGGCATGGTTCATTTTTATTGGGGCTGTTATTTAAT
TGGtttctttgaaataaatattCTTAAACGATATCTCGAAGTCAGAAAAT
CTTCAGTATCTT
Run BLAST on NCBI

transcript from alignment at scaffold_407:396283..402565-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064085 ID=TCONS_00064085|Name=TCONS_00064085|organism=Clytia hemisphaerica|type=transcript|length=6283bp|location=Sequence derived from alignment at scaffold_407:396283..402565- (Clytia hemisphaerica)
TGACGAGATTCTTACTTGATTTTTACGTAAAAAAACTTGAATACCTTCGG
TCAGGAATAAATTTTGATTAATGAATAAACTGATTATGGATTGGCCAACT
ATGGCAAAACTTGAGAAACGTCTCACTCTACTATATCATTACCTACCTAG
TAAACTAGAGTCTACTCCTGACGAAACTTTACTTTCCGATAATTTTTGAT
GACGCTGAATCTAATGAAGTAGACTAGGAACACTTTCGAAAAACAACTAG
AATCTACCTAAGTAAAAGCTCAAAATTGTGAACTAGCCACTTACACGCCA
TTCAGTCTATAAAAGCATTAAGTGGACCCGGGCTATTAGGCGTTGTCCAC
GATTTCCCTGAATTTAAAAAATCATACTTTTATGATTCAAATGTAAATTA
AAAACTCGTGAAATAATTGTAAGCTTGAATATTTTTCAGAAAGCAACATC
CCACGACTTGGCGATTACCGACCATTCGCGCCACATGCTCAAGTCATCAG
TCGAAACGAGATCAAAATAAAATGGCTGCCAGCAAGATTAAATCACAACG
ACCTTGTTATTGTGTATGAACTTTACAGCAATCAAGATCTTGAATACTTC
GGACAAGATTTGGTCCACGTTGCAAAGCGTCTCCAGCATGGTAGAGAATA
TAAGTTTCAATTGAGAATCTGCAATGCAATGTTACCGAATGACTGTTCTC
AATTCTCTTTCCCAAGATATCAGAAGTTGACAGGTAAATTTTTTGATTGT
CCAGGAATATTAAACAGTAAAACTTCATTAAAACGTTAAAAAAATTCGAC
AAAAGTGTTTCCAATACCCCATAAAATACCGATGCTTGACCACCAGGATA
CAGTATATAAACACTTAAAACTCTTGGAACTTTGCCAAAGTCAAGCCTCT
GTTATAACCTTACATAATGATTTAAAGGTATTTAAAAGTGTTATTCACGA
AAACAAGGCTCGCAAGACAAACAAGGAAAACAAAAACAGTAAACAAAATT
AACACAGAATACTGTAGCATTCAACTTTCAAGCCAAAGTTGAAGCTCGTG
AACTGATCAGGCATGTTTGAATATCTTTTGGCGGACTAAAGATAATTTTG
AGTATAAATAGTCCAAGTGTGCTAGCTCCAACATATAAGATAGTAGAGTT
TTCAATGGGAGGAAGTTTGGAGGTGTCACTAAAGTTTGGTTGAGATTAAT
TTGTGATCGAATTGCGATCAACCAATAATGAGCTATTTACCAGAAATCCC
CGTAACTGACTTCAAAGGTAGATATCGATACAGGGGTTAATGCATCTGAA
ATAGTAGTATGGATATCAAGCAGGGAAATTCTATTACACGCTTATGTTTC
AGTAGCATAGACAAAGGGGGCACAAAATTTGTGTAGGAGAGCAGATTTTT
ATGACACTGTAATTATCTATCCATATGAAAATATATATGTGTCATAAAAA
TCTGCTCTCTTACACAAATGGTCATTGCGCCTATCCCCTTGTCTACGCTA
CTGTGTTTCAGTGACTCGACTGCGCAATGAGAATGATGGTAAAAGTTTAC
TCCAATTATATAATATTCTATTCTCAAAAACATTTTATTCCACAGACATG
GAGTTAATAGAGGAAGGCGAAATGATGAATTATCAGAAGAATCCGATGAA
AGAACACTATATCCTCATATTGCTCCTTTCAATGTTTTTTACAACCGTTC
TACTTGTTGGATTGATGGTATTAAAGTAAGACTTTTTTCTTCTCATATAT
TACCTTTTGCACTCAATAACATCTCTCGAAGATGTGTGAAAATGCTTAAA
CTTGAAAAAAAACCCGGGGTATCTAGTCACGTGGTACTGGTGCTGGTATG
CCACGCTTAAGAGTGCTTTTTTGGGACTTGTCGCAAATATCCTAAAACCT
TATTTAGTCACTCAAACGGTTTCAAGAACGATAAAAAAAGGGGGAGGAAT
CTCAACTTTACCCAAGGTTTGAAATAAAAGGAAGATGTATATGTCCAAGG
GTTTTGCAAGGGCATATGCATGTCAGAATTAGTAAGCATAAATCAATTGA
ACAGGTTAGACATTACGTAAATAATGGTTTGGCTCGAAATGGCTTCAAAC
AAGTAGACACTGACAGTAATGATTTTCGGCTAGTCATTGATAACGAAACC
TACATAAATTGTGTGGGACTCGTGATGTCAGCACTTTCATCAGATATCAA
CAATCCAACTACAGTGCACCCGTCATTCGAATGTCCAATGAACGCTCATT
AAAACAGCTTATGTTTAATGATGACACTTCGAGAAAACGTGGTCGTCCAA
TGAAAATGCTCTTGGAGCAAGTCATATCAGATAGAAATTAAACTATTGAT
CAGCTTTGTAAAAAATCTATTTCAGATAATGTGTGAGATTGCCAAAAGGG
ATTATACAAGCAAGGTTGTTAGGTATCCTTTGAAGCTATGTGGCCAATCC
AATCCTTATATAAACTGTATAAAACGTTTATTATTATCATATTATTTCAA
ATTTATACTTCACCATGTTTTTGTTAAATTCCCTCCAGCAACGGTGTAGG
CTATTTCGAAACGACTTGTTTGCTGCACAAGAACAACTTGTTGGTTTTTA
GTTAGATTGACGTAAATCCTTTTCGTTGAACCCGACTCTTGAAAATTATT
TTGGGGGTCAGGAATTTTACCTATAATATCAGTTTCATGGCTATAAATAT
TTTTGCCAGGTAGGGCTAATCAAGGTTTGAAGGCCCCTTCTCAAAAGGAT
TCAAAATTTTATCTTTTTTTGAACACATGCACATATAGTGGTTGCACCCA
AAGAAAGAATGCTACCGAACCGAACCGAATATTACACCCTACAATAAATC
TACTATTAGAACGCCATGACGTAGACATTAAACCATTAAACACAATTAAA
CCCGTTAACCAACAAAAACTATTCCGTTCTTCCATAGGTATCTCAGTTAC
TCATTTGATGGAATTACTTTCGAACTATCGACCAATCAAATTCCCGCTCG
CAAAGATCATCCATACATCTTTCTTACCAATAAAAACACAAAACAAACAA
ACTCGATACCGATCATTCGAAACCAACCGAAAAGTTCCAAAACGACCGTC
AATGTAAAGAACAATCTACACGACGACAAAGAAGAGCAAATATCAGTAGC
TGCGAGCAAAAAAAGTGCAGAATTAGTAGAAGAGGGTCGTAGTGCGAAAT
CAACCTCACCGAATGTCGAGAACGTGAGCACAAAAGATCACAAAGCATCC
TTTGAATCAAATAATGGCAAAGGTTGGATAACAGCATCTCCTAAACATCA
CACGAGAAAACACCAACGAAAGAGAAATCGAACTTTAAGTTCAGGTGATA
ATCAAGGAAGCAAAACCGCACCTACTATTTGCGACAGTCCTCTTAACGCT
GGACTAGACAAACATCAATTGTCACACAGTAGATCCAATTCGTTCTCTGG
AGGAACTGAAGATACCAACTTTCCGAAAACGGAAAAAAACTTTGTTTCAG
ATTCTATTGTTGTGGTAGTTGACAATAGCAACGTCTTTATCGGCGCACGT
GAAACAGTTTGTATCGCACATGCGCAGCAAATAAAACCAAAACATGTTAA
ATTGCGTCTTCAACAATTGCTGAGTGTAGCAGAGAGCGGACGAAAGGTGA
CACGCGGTTTCACGGCGGGCTCGTCACCACCGGCTTCTGAACAAGTATGG
GATGTGTACAGGTAAGTTGTTACAGTCTATCCACGAAGTGACGCGTTCTT
CTTACCATAGAACGAGGAAACCAGTTACGAGCAGTGGAACCTCTAATTAG
CGGACACCATCGGGGAAAGGGGTTAGTGTCCGCTAATTAGAAGTGTCCGC
CTTTTAGAAACTTTTGATCTCGGAGCTCCAATTTTAGAATTAGGCCATCC
CAGGGTGTCGAAAATACAAAATTAAGGTCTAAAGTAATTATCTGCAGACA
CTAGGCCATAGAAGAACAAGAGAAAGGTTATTAGAACGCAACAATTTTTT
AATCGTTGAATGGGTCAAGGGAAAACTGGAAATTTGTAGAAATAATTTGA
ATAATAAGACTAATAAGTGCTTGAAATAAAAATATCTAAAAAATTTTTTT
TCGATTTTGGACGTTTGTGACTCGTTTGATATTCAATGTCCGCTAATTGG
AGAGCTAAAATAGGGGTTTTTGCCATTTCATGCGAAAAAATTTGTCCGCT
AATCAGAGGGTCCGCTAATTGAGTGTCCACCTTTTAGAAACTTTTTTATG
AGGATTTGACTAGGAAACGGCCGGGGAAAATGAAATTGTCCGCTAATCAG
AGGTGTCCGCCTTTTAGAGTGTCCGTTAATTAGAAGTTTTACTGTATAGT
TGTCAGGCGAGAGCTCAAGAAAATGCACGCTCAGCGGGAACAGACTTTGA
TTTTGACTCTGTTGGTTCTGAATTTAAGCTTTAAATCTAATCTCGATTTG
GTCAATTTGACCGGAGAAATTTCAGTACGGTCTCACAGGAAAATATTTAA
CGTATATGAAACCCCGAACCAAATCTCCCTCTAGGACGATACATAGCATA
ACATCCACAAAGCGCTAGATGAACTAAGCAAAGTTTAATGCCGGGTACGA
GCAGTGTACTTGAAAGGTTAAGAAATAAAAGGGCATACCTGTATCCAATC
CAATTTTGTGACTGAAATAATCTTCGTTTTTATTTCTTTAGACGTCATGG
TTACTTAGTCGATCTGGAAGAGAGACGAGGGAAAGATGAACAAAGAGTGG
ACGAGCAATTGCACCTGGCCATTTACAAGGTGGAAATCACATCAGTGAAC
TAAAGTTGACGCTCTCTAATTCGATCTTCAAGGGGAATTGGATTTTCATC
GAATAGGGGAGCGCCGTTTATGAGAGTTTCTTGGTGAAGGGGACTTTATA
TTTCATCAAATGAGGAAGCCTATCGAATGTCGAATTAGAGAGGGTCAACT
GTACATACAAACTGTAGGACAGTCGTTATTTTACTTTCACAAATTGGGAA
AATAAGTCAAAACGGGTGTATTGATTAAAATCAGACGAAAACGCAAGATG
ACCAGTAGCGTAGACAAAAGGGGCGAAAAATTTGTGTAGGAGAGCAGTTT
TTTATGACACTTTTATTATCCATTCCTAACATAAAACGATAATTAATTTG
TCATAAAAACCTGCTCTCCCACACAAATCTTTCGCCCCTCTTGTCTACGC
TACTGAGTGACCATTAAACTACAGCGTCATTCATAGGCGACTATTTCTCA
ATAGTCTAGTTCGGTACAACGCTTATTGCCTGTAGTTTGCTGGGCTAAAA
CTAGCCTGTGATTTGCTGTGCTAAAACTACTTGTCATCTACAAACTGCTC
TGCTCTTGGTCCTTTTGAAAAACCTTTGAAATAATATGCAGAACTGAAAA
GAAACAAATAATTGAATTTTTTGAGTAACTTCTTCTTTCTCAGGCACTTG
TTGATCTAAAACCACAGACACTTGTACTCGTCACGGGAGACGGACACAAA
GGAAAATCACGCGGCGACACAAGTTTTATCAATTGTGCAGTGAAAGCTGT
ACAACTAGGATGGAACGTTGAAGTTTTGTCGTGGAAACACAGCCTTAGTA
CGGAATGGATGAAGGTTGCATCAAAACATTTAAATAAGTTCAAAATCATT
AATCTAGACGAGTAAGTTATTTTCTTGAAGTCATGAAAATCAACCTGGTA
AACAGGTTTTAAAGAATGTGCCTGATACCTGCTCTAAGGTACTGAATGAC
ATGTTTTCGGACCGAGATTCAAACTTGGAAGTAAGAGCGGGTGGTAAAGG
GGAATCAAGGTTGCCTGGATGATCCTTAGATCACTTTTTTTCCGCCCTTT
CCCCTTTTCACTCCTATGAAATCAGTTAAAAAATATTGAAATAGCGAAAA
GAATCTAGGCTTAATATTTTTTTCAAAGTTTTTCTTATTGAGGGAGTAGT
AAAATTCATTTCTTAATTATGCCTCCTCCTCCTCGCCTATCTATGTAAGA
TAGACGTAATCGACTTGGATTTACTTATACATCTCATCCGATTCTTTCTA
GCTACATTGAAGTGTTGACACAAATCGAACGTCGTCATTCCAAAAAGAGG
ATAGATATTCGCACAGGCTAGTTCCTATGATGAGCTGTCTGCAGTAGCCC
TCTCTCGTGTAAATAGTGTATATAGATATAATATAAGGCATGGTTCATTT
TTATTGGGGCTGTTATTTAATTGGTTTCTTTGAAATAAATATTCTTAAAC
GATATCTCGAAGTCAGAAAATCTTCAGTATCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040175XLOC_040175Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064085-exon-scaffold_407-1575043694:402540..402565TCONS_00064085-exon-scaffold_407-1575043694:402540..402565Clytia hemisphaericaexon
TCONS_00064085-exon-scaffold_407-1575043694:401833..402126TCONS_00064085-exon-scaffold_407-1575043694:401833..402126Clytia hemisphaericaexon
TCONS_00064085-exon-scaffold_407-1575043694:400841..400970TCONS_00064085-exon-scaffold_407-1575043694:400841..400970Clytia hemisphaericaexon
TCONS_00064085-exon-scaffold_407-1575043694:398855..399628TCONS_00064085-exon-scaffold_407-1575043694:398855..399628Clytia hemisphaericaexon
TCONS_00064085-exon-scaffold_407-1575043694:397787..397874TCONS_00064085-exon-scaffold_407-1575043694:397787..397874Clytia hemisphaericaexon
TCONS_00064085-exon-scaffold_407-1575043694:396905..397122TCONS_00064085-exon-scaffold_407-1575043694:396905..397122Clytia hemisphaericaexon
TCONS_00064085-exon-scaffold_407-1575043694:396283..396514TCONS_00064085-exon-scaffold_407-1575043694:396283..396514Clytia hemisphaericaexon
TCONS_00064085-exon-scaffold_407-1510915933:402540..402565TCONS_00064085-exon-scaffold_407-1510915933:402540..402565Clytia hemisphaericaexon
TCONS_00064085-exon-scaffold_407-1510915933:401833..402126TCONS_00064085-exon-scaffold_407-1510915933:401833..402126Clytia hemisphaericaexon
TCONS_00064085-exon-scaffold_407-1510915933:400841..400970TCONS_00064085-exon-scaffold_407-1510915933:400841..400970Clytia hemisphaericaexon
TCONS_00064085-exon-scaffold_407-1510915933:398855..399628TCONS_00064085-exon-scaffold_407-1510915933:398855..399628Clytia hemisphaericaexon
TCONS_00064085-exon-scaffold_407-1510915933:397787..397874TCONS_00064085-exon-scaffold_407-1510915933:397787..397874Clytia hemisphaericaexon
TCONS_00064085-exon-scaffold_407-1510915933:396905..397122TCONS_00064085-exon-scaffold_407-1510915933:396905..397122Clytia hemisphaericaexon
TCONS_00064085-exon-scaffold_407-1510915933:396283..396514TCONS_00064085-exon-scaffold_407-1510915933:396283..396514Clytia hemisphaericaexon
TCONS_00064085-exon-scaffold_407-1491911889:402540..402565TCONS_00064085-exon-scaffold_407-1491911889:402540..402565Clytia hemisphaericaexon
TCONS_00064085-exon-scaffold_407-1491911889:401833..402126TCONS_00064085-exon-scaffold_407-1491911889:401833..402126Clytia hemisphaericaexon
TCONS_00064085-exon-scaffold_407-1491911889:400841..400970TCONS_00064085-exon-scaffold_407-1491911889:400841..400970Clytia hemisphaericaexon
TCONS_00064085-exon-scaffold_407-1491911889:398855..399628TCONS_00064085-exon-scaffold_407-1491911889:398855..399628Clytia hemisphaericaexon
TCONS_00064085-exon-scaffold_407-1491911889:397787..397874TCONS_00064085-exon-scaffold_407-1491911889:397787..397874Clytia hemisphaericaexon
TCONS_00064085-exon-scaffold_407-1491911889:396905..397122TCONS_00064085-exon-scaffold_407-1491911889:396905..397122Clytia hemisphaericaexon
TCONS_00064085-exon-scaffold_407-1491911889:396283..396514TCONS_00064085-exon-scaffold_407-1491911889:396283..396514Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_407supercontigscaffold_407:396283..402565 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0222771	0	0.0253057	0	0	0	0	0	0.578028	0	0.370784	4.03469	3.93427	7.74108	13.257	5.06138	3.66442	3.06871	3.56096	1.92054	2.16004	1.42338	1.11316	4.9222	2.92169	2.58864	0.922551	25.8413	21.2856
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064085 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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