|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064065 ID=TCONS_00064065|Name=TCONS_00064065|organism=Clytia hemisphaerica|type=transcript|length=5538bpRun BLAST on NCBI protein sequence of TCONS_00064065-protein >TCONS_00064065-protein ID=TCONS_00064065-protein|Name=TCONS_00064065-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1113bp MMPLQEISEKQVDTGAMDKEATNKLKRSKSLSLDETDELKRKEAGGDKSRRun BLAST on NCBI transcript from alignment at scaffold_407:213598..237389- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064065 ID=TCONS_00064065|Name=TCONS_00064065|organism=Clytia hemisphaerica|type=transcript|length=23792bp|location=Sequence derived from alignment at scaffold_407:213598..237389- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_407:213598..237389- >TCONS_00064065 ID=TCONS_00064065|Name=TCONS_00064065|organism=Clytia hemisphaerica|type=CDS|length=50130bp|location=Sequence derived from alignment at scaffold_407:213598..237389- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064065 vs. Swiss-Prot (Human)
Match: B3A3 (Anion exchange protein 3 OS=Homo sapiens GN=SLC4A3 PE=2 SV=2) HSP 1 Score: 571.622 bits (1472), Expect = 3.845e-176 Identity = 352/904 (38.94%), Postives = 535/904 (59.18%), Query Frame = 3
Query: 2025 QWKERARWIKFEEDVEKNE-RWGKPHVASLSFQSLLELRKGLETGTVLLNLDNYDLPTIFESIVENLVITDQIHSTMREKVKGILLSKHCHHHQNK-PGLLRRKPSTVSLTSQGTRXXXXXXXXXXXXXXXXXXXEIEMEKVDDPLMSNCNGHTTVDIADDWSN------HDGDEFNKKKSTVKFAPITEEPFGPSDPKTESDVKERIPEGAEATSVLVAAIEDLDRTAVAFVRLAKGCLLGNLTEVSIPVRFLFVIMGPP-SNHDYFEIGRSVATLMSDKIFHDLAYSAKNRDDILAAINSFLDDSIVLAPGDWDRHLLL---------------PLLQAEISEKRRERI-----KLLKQQAQWEDPDEDNPLERTGKFFGGLKREIPKKIKFFKSDILDGFNVRCLVSIIFVFFATFAPTITFGALLEKKTKGNLGVIETLLATXXXXXXXXXXXXQPLMIVGTTGPILVFEEATFNLSYLFGIDFLKWRLWIGVWVMIICWAVVMFEGCFLVEHFTRFTEEVFSVLISLLFVYEAIYFLIKTFKENPLMDYDKLKGGVTLTSNFTLNSNITNITSPVDPTSSPCSYRD-PNVALISTLLLLGTFYIAYYLRMLRVSHFLSSKARRVLSDFGVPFAMVFMVVLNIIAHDVSHVPKLKFKKGIQPTRDDRQNFYVSPFG----LNGYWIIAAFLPALCVSILLFMETELTXXXXXXXXXXXXXXXXYNMDLAVMGLICGLCSITGLPWMCAATVRAVQHQNALAVMSRSHAPGERPYLLRIHEQRLTNICIHILIGICVVAYPLIEEIPLAVCYGVFFYLGFTSLSGIQFIEQLKLIFVPSKYHPNRKYIRNVTYRSLLWYTMIQVFCLLLLIICKLSPAAPAFPFIIIGMVFLRR-FIERYF 4631
W+E ARWIKFEEDVE+ RWGKPHVASLSF+SLLELR+ + G LL+L+ LP I +VE ++++DQI R V LL KH H + +K G R PS+ S+ S + P S+ +ADD HD D K P G + E+IPE AEAT VLV + L++ A AFVRL + LL ++ EV +PVRFLFV++GP ++ DY E+GRS+ATLMSDK+FH+ AY A +R D+L+AI+ FLD SIV+ P + + LL Q ++ R +L + E ED+PL RTG FGGL R++ ++ + SD+ D + +C+ +++F++FA +P ITFG LL +KT+G +GV E +++T+ G+ F L QPL++VG +GP+LVFEEA F +++L R+W+G+W+++ A+V EG FLV + + FT+E+F+ LISL+F+YE Y L K F E+PL+ + +G + +L++ + S + PT P S R+ PN AL+S +L+LGTF+IA++LR R S FL KARR++ DFG+P +++ MV+++ D ++ KL G+ T D++++++ P G + ++AA +PAL V IL+FMET++T ++++++ +L KG G+++DL ++G + GLC + GLPW+ AATVR+V H NAL VM + APG++P + + EQR+T + I L+G+ +V ++ IPLAV +G+F Y+G TSLSGIQ ++L LI +P+K+HP + Y+ V + +T IQ+ C+ LL + K + A+ AFPF+++ V LR + R F
Sbjct: 337 HWRETARWIKFEEDVEEETERWGKPHVASLSFRSLLELRRTIAHGAALLDLEQTTLPGIAHLVVETMIVSDQIRPEDRASVLRTLLLKHSHPNDDKDSGFFPRNPSSSSMNS--------------------------VLGNHHPTPSHGPDGAVPTMADDLGEPAPLWPHDPDAKEKP---------LHMPGGDGHRGKSLKLLEKIPEDAEATVVLVGCVPFLEQPAAAFVRLNEAVLLESVLEVPVPVRFLFVMLGPSHTSTDYHELGRSIATLMSDKLFHEAAYQADDRQDLLSAISEFLDGSIVIPPSEVEGRDLLRSVAAFQRELLRKRREREQTKVEMTTRGGYTAPGKELSLELGGSEATPEDDPLLRTGSVFGGLVRDVRRRYPHYPSDLRDALHSQCVAAVLFIYFAALSPAITFGGLLGEKTEGLMGVSELIVSTAVLGVLFSLLGAQPLLVVGFSGPLLVFEEAFFKFCRAQDLEYLTGRVWVGLWLVVFVLALVAAEGSFLVRYISPFTQEIFAFLISLIFIYETFYKLYKVFTEHPLLPFYPPEGAL----EGSLDAGLEPNGSALPPTEGPPSPRNQPNTALLSLILMLGTFFIAFFLRKFRNSRFLGGKARRIIGDFGIPISILVMVLVDYSITD-TYTQKLTVPTGLSVTSPDKRSWFIPPLGSARPFPPWMMVAAAVPALLVLILIFMETQITALIVSQKARRLLKGSGFHLDLLLIGSLGGLCGLFGLPWLTAATVRSVTHVNALTVMRTAIAPGDKPQIQEVREQRVTGVLIASLVGLSIVMGAVLRRIPLAVLFGIFLYMGVTSLSGIQLSQRLLLILMPAKHHPEQPYVTKVKTWRMHLFTCIQLGCIALLWVVKSTAASLAFPFLLLLTVPLRHCLLPRLF 1200 The following BLAST results are available for this feature:
BLAST of TCONS_00064065 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.