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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064060 ID=TCONS_00064060|Name=TCONS_00064060|organism=Clytia hemisphaerica|type=transcript|length=978bp
CATGCGACGCAAAAACGTTGACAAACGGGACAGGAACTTTTACATCTCCT
GGATATCCACAAAACTACCCATTCGGTGACACGTGTCAATGGAAAATCAA
AGTCGCAcccaacttgaaaatcaaattacaaTTCCCAGATATGGATATCT
TAAGTTCTGACAGCAGTGAGGTTGCATGTGGTACGAACCGTATCGCTGTT
TCTCATTCGTCTGACCCACGAGATCCACCATTACTGTATTGTAACTCACA
TCCTCCACCAATAGAAGCACAGGAGTATGGGAACGAATTAACAGTCACTT
TCACTTCTACAAAGACTGAAGCAAAACAAAGCAAAGGTTTCAGTGCAAAT
TATACAGCTTATGACCCAAACCCACCTCCACCGACcaccacaacaacaac
caccacAACAACAACTGCTAACACAACCACAACAATCACACCTTCAAACA
CAACGACTCCAGCAACCTCACAAGCACCTGTCACTCAAAAGCCTAAATCG
AAACTTTCGAAAGGAGTCATTGCTGTCATTTGCATCCTGGTCATTCTGGT
TGTACTTTTGATCATCGATATCATTTTGTACCAGAAAGATATGGGCGTTA
TTTACTCCATCAGACGGGCGTGTGGTGGTTACGATTCTGTCTCCACTTAA
ACGCCAATAGACAAACTTTCACGCTACAAATGAAATTTGCAATTTTgaat
tactttcattttttaaagatgCATTGATTGACAAAATTCGTCTGTTCAGT
TTcacttttttaacaatttttaccGACAAAAACAAACATTCTTATAATCT
TGTAACGCTTTTTGTATTCCATTTTTGGTATtgattttttagcattttgt
aaGCATTTTTCATATGATTTAATGTATTTATATCATCGTGACCGTTGTTG
TATTTAAgacctttttgatttttttgatttaatgCACGAATAAAATTTGA
AACGTAAACTTAAGTTATATCAACTTTC Run BLAST on NCBI protein sequence of TCONS_00064060-protein >TCONS_00064060-protein ID=TCONS_00064060-protein|Name=TCONS_00064060-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
CDAKTLTNGTGTFTSPGYPQNYPFGDTCQWKIKVAPNLKIKLQFPDMDIL
SSDSSEVACGTNRIAVSHSSDPRDPPLLYCNSHPPPIEAQEYGNELTVTF
TSTKTEAKQSKGFSANYTAYDPNPPPPTTTTTTTTTTTANTTTTITPSNT
TTPATSQAPVTQKPKSKLSKGVIAVICILVILVVLLIIDIILYQKDMGVI
YSIRRACGGYDSVST Run BLAST on NCBI transcript from alignment at scaffold_407:148070..149319- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064060 ID=TCONS_00064060|Name=TCONS_00064060|organism=Clytia hemisphaerica|type=transcript|length=1250bp|location=Sequence derived from alignment at scaffold_407:148070..149319- (Clytia hemisphaerica)
CATGCGACGCAAAAACGTTGACAAACGGGACAGGAACTTTTACATCTCCT
GGATATCCACAAAACTACCCATTCGGTGACACGTGTCAATGGAAAATCAA
AGTCGCACCCAACTTGAAAATCAAATTACAATTCCCAGATATGGATATCT
TAAGTTCTGACAGCAGTGAGGTTGCATGTGGTACGAACCGTATCGCTGTT
TCTCATTCGTCTGACCCACGAGATCCACCATTACTGTATTGTAACTCACA
TCCTCCACCAATAGAAGCACAGGAGTATGGGAACGAATTAACAGTCACTT
TCACTTCTACAAAGACTGAAGCAAAACAAAGCAAAGGTTTCAGTGCAAAT
TATACAGCTTATGACCCAAACCCACCTCCACCGACCACCACAACAACAAC
CACCACAACAACAACTGCTAACACAACCACAACAATCACACCTTCAAACA
CAACGACTCCAGCAACCTCACAAGGTTTGTAATTCGATCGTCAAATGAAT
AAAACTTTATTTCATCCGATATCGTTCATTAGTTTTCGGCAAAGTTATTA
CTAAGGTTCTTTCCATTCAATAAGATATAATCGTCAACCATGCTTAAAAA
AAGTTTTTAATCGATATTGATTTCAATGACTTTATGGGGTTCTTACTTTT
AATGGCCTGATTTCTTTTCTCAAAAACTTGTTACAAACTTTGAATATTTA
TGGATAAAATGTTTAAATGCAGACACATTTAACCTCATCTTTTCAGCACC
TGTCACTCAAAAGCCTAAATCGAAACTTTCGAAAGGAGTCATTGCTGTCA
TTTGCATCCTGGTCATTCTGGTTGTACTTTTGATCATCGATATCATTTTG
TACCAGAAAGATATGGGCGTTATTTACTCCATCAGACGGGCGTGTGGTGG
TTACGATTCTGTCTCCACTTAAACGCCAATAGACAAACTTTCACGCTACA
AATGAAATTTGCAATTTTGAATTACTTTCATTTTTTAAAGATGCATTGAT
TGACAAAATTCGTCTGTTCAGTTTCACTTTTTTAACAATTTTTACCGACA
AAAACAAACATTCTTATAATCTTGTAACGCTTTTTGTATTCCATTTTTGG
TATTGATTTTTTAGCATTTTGTAAGCATTTTTCATATGATTTAATGTATT
TATATCATCGTGACCGTTGTTGTATTTAAGACCTTTTTGATTTTTTTGAT
TTAATGCACGAATAAAATTTGAAACGTAAACTTAAGTTATATCAACTTTC
Coding sequence (CDS) from alignment at scaffold_407:148070..149319- >TCONS_00064060 ID=TCONS_00064060|Name=TCONS_00064060|organism=Clytia hemisphaerica|type=CDS|length=1296bp|location=Sequence derived from alignment at scaffold_407:148070..149319- (Clytia hemisphaerica)
CACCTGTCACTCAAAAGCCTAAATCGAAACTTTCGAAAGGAGTCATTGCT
GTCATTTGCATCCTGGTCATTCTGGTTGTACTTTTGATCATCGATATCAT
TTTGTACCAGAAAGATATGGGCGTTATTTACTCCATCAGACGGGCGTGTG
GTGGTTACGATTCTGTCTCCACTTAATGCGACGCAAAAACGTTGACAAAC
GGGACAGGAACTTTTACATCTCCTGGATATCCACAAAACTACCCATTCGG
TGACACGTGTCAATGGAAAATCAAAGTCGCACCCAACTTGAAAATCAAAT
TACAATTCCCAGATATGGATATCTTAAGTTCTGACAGCAGTGAGGTTGCA
TGTGGTACGAACCGTATCGCTGTTTCTCATTCGTCTGACCCACGAGATCC
ACCATTACTGTATTGTAACTCACATCCTCCACCAATAGAAGCACAGGAGT
ATGGGAACGAATTAACAGTCACTTTCACTTCTACAAAGACTGAAGCAAAA
CAAAGCAAAGGTTTCAGTGCAAATTATACAGCTTATGACCCAAACCCACC
TCCACCGACCACCACAACAACAACCACCACAACAACAACTGCTAACACAA
CCACAACAATCACACCTTCAAACACAACGACTCCAGCAACCTCACAAGCA
CCTGTCACTCAAAAGCCTAAATCGAAACTTTCGAAAGGAGTCATTGCTGT
CATTTGCATCCTGGTCATTCTGGTTGTACTTTTGATCATCGATATCATTT
TGTACCAGAAAGATATGGGCGTTATTTACTCCATCAGACGGGCGTGTGGT
GGTTACGATTCTGTCTCCACTTAATGCGACGCAAAAACGTTGACAAACGG
GACAGGAACTTTTACATCTCCTGGATATCCACAAAACTACCCATTCGGTG
ACACGTGTCAATGGAAAATCAAAGTCGCACCCAACTTGAAAATCAAATTA
CAATTCCCAGATATGGATATCTTAAGTTCTGACAGCAGTGAGGTTGCATG
TGGTACGAACCGTATCGCTGTTTCTCATTCGTCTGACCCACGAGATCCAC
CATTACTGTATTGTAACTCACATCCTCCACCAATAGAAGCACAGGAGTAT
GGGAACGAATTAACAGTCACTTTCACTTCTACAAAGACTGAAGCAAAACA
AAGCAAAGGTTTCAGTGCAAATTATACAGCTTATGACCCAAACCCACCTC
CACCGACCACCACAACAACAACCACCACAACAACAACTGCTAACACAACC
ACAACAATCACACCTTCAAACACAACGACTCCAGCAACCTCACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064060-exon-scaffold_407-1575043694:148846..149319 | TCONS_00064060-exon-scaffold_407-1575043694:148846..149319 | Clytia hemisphaerica | exon |
| TCONS_00064060-exon-scaffold_407-1575043694:148070..148573 | TCONS_00064060-exon-scaffold_407-1575043694:148070..148573 | Clytia hemisphaerica | exon |
| TCONS_00064060-exon-scaffold_407-1510915933:148846..149319 | TCONS_00064060-exon-scaffold_407-1510915933:148846..149319 | Clytia hemisphaerica | exon |
| TCONS_00064060-exon-scaffold_407-1510915933:148070..148573 | TCONS_00064060-exon-scaffold_407-1510915933:148070..148573 | Clytia hemisphaerica | exon |
| TCONS_00064060-exon-scaffold_407-1491911889:148846..149319 | TCONS_00064060-exon-scaffold_407-1491911889:148846..149319 | Clytia hemisphaerica | exon |
| TCONS_00064060-exon-scaffold_407-1491911889:148070..148573 | TCONS_00064060-exon-scaffold_407-1491911889:148070..148573 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_407 | supercontig | scaffold_407:148070..149319 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000859 | CUB_dom |
Blast
The following BLAST results are available for this feature:
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