TCONS_00064050 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064050
Unique NameTCONS_00064050
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1020

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064050 ID=TCONS_00064050|Name=TCONS_00064050|organism=Clytia hemisphaerica|type=transcript|length=1020bp
GTTGCAGACTTAGTTGTGAGGTGCAACTGACTGTGAagtaaaaagtcaaa
acattttcaaagatcTTCGAAATGTCTTCAAatgttgtttttgatttttc
cggaAAAGTTGTGTTGGTAACAGGTGCTGCCTCAGGGATCGGTCAGGGTA
CAGCTTACATGTTCGCAAAATGTGGCGCCCGACTCGTTGTCACAGATCGC
GACGAAACCAACTTGAAAGAAACGGCCAAGAAATGTGAAGAGATGAGTAA
ACAGAAGCCACTGGTCATCGTTGGTGATTTAACCGTTCAAAGTGATCTTG
AGAATATCATTAATACCACAATGGAGACATGCAAACAACTTGATGTATTG
GTAAACAATGCAGGAGACTTGGTGATGGCTACTTGTCTCCAGACCTCCAC
AGAAGATTTCGATAAAATAATGAATATTAACGTCAGatCGGTTTTCCAGT
TGACAAAGATGGCTATTCCACATTTGAAGAAAACTCGAGGAAACATTGTA
AATGTCTCAACCTTGGGAAGTTCGCGCCCACAAATTGGTTTCAGCGCTTA
TTGCATGAGCAAAGCAGCATTAGATCAATTCACAAGAGCTGCTGCTATCG
AATTAGGAGCTGATCAAGTTCGTGTCAATTGCGTCAACCCAAGTATCATT
GCCACTGAGAAATGCTTAAACAGTACTGATGCAAACGTTAAGACTGCTAT
TGAGAGAAGCAAAACGACACACGCTTTGGGACGTGCTGGTACGGTTGACG
AAGTTGctgccgccattttgtttctagcGTCAGGAGCTGCATCGTACATC
ACAGGTGTTACGATGCCAATCGACGGAGGTCGTGGCGACATGATCCCTGt
ttgaaatattatttagtGTAATTTTAATTGTTAATGGGAATTTTTTGATT
GCTATAACGATGACAATAAAATACAAGGTTCAGTTGaattatcgaccgcc
ggaggcggtttctttcatagtggtacgctaatctcgttttgccttggctc
attactttgtctaccattta
Run BLAST on NCBI

protein sequence of TCONS_00064050-protein

>TCONS_00064050-protein ID=TCONS_00064050-protein|Name=TCONS_00064050-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MSSNVVFDFSGKVVLVTGAASGIGQGTAYMFAKCGARLVVTDRDETNLKE
TAKKCEEMSKQKPLVIVGDLTVQSDLENIINTTMETCKQLDVLVNNAGDL
VMATCLQTSTEDFDKIMNINVRSVFQLTKMAIPHLKKTRGNIVNVSTLGS
SRPQIGFSAYCMSKAALDQFTRAAAIELGADQVRVNCVNPSIIATEKCLN
STDANVKTAIERSKTTHALGRAGTVDEVAAAILFLASGAASYITGVTMPI
DGGRGDMIPV
Run BLAST on NCBI

transcript from alignment at scaffold_407:4590..7247-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064050 ID=TCONS_00064050|Name=TCONS_00064050|organism=Clytia hemisphaerica|type=transcript|length=2658bp|location=Sequence derived from alignment at scaffold_407:4590..7247- (Clytia hemisphaerica)
GTTGCAGACTTAGTTGTGAGGTGCAACTGACTGTGAAGTAAAAAGTCAAA
ACATTTTCAAAGATCTTCGAAATGTCTTCAAATGTTGTTTTTGATTTTTC
CGGAAAAGTTGTGTTGGTAACAGGTTAGTGTAGTTTGTAATTCATAATTT
ATAAAAGTTCTTTCCGTTAAGCAGTTTGGACAATCTTCCAATATAAATAC
AAAGCGTCTTTTTGTAGCAAAAAAGATTAAATCATTTTGCCTGAACTCAA
TTTCATTTCCACCTTTATAAGATTTTACGAATTAGTTCCTTAAGAATTGG
CTTCTATTTGCCTGGAATTAGACTGGAGTCGTTTATAATGTGTGTGATAC
AGTTATTTCTATGTCTGAATTAGTGATCTAGCATGCTAGAATAGCCTGGA
ATTGGTTTTAGACTACGTGACCTCGTGCTGACATATCTTCAATTTTTTGA
CTCAGGTGCTGCCTCAGGGATCGGTCAGGGTACAGCTTACATGTTCGCAA
AATGTGGCGCCCGACTCGTTGTCACAGATCGCGACGAAACCAACTTGAAA
GAAACGGCCAAGAAATGTGAAGAGATGAGTAAACAGAAGCCACTGGTCAT
CGTTGGTGATTTAACCGTTCAAAGTGATCTTGAGAATATCATTAATACCA
CAATGGAGACATGCAAACAACTTGATGTATTGGTAAACAATGCAGGAGAC
TTGGTGATGGCTACTTGTCTCCAGACCTCCACAGAAGATTTCGATAAAAT
AATGAATATTAACGTCAGGTATGTATTACTTTAGGCGTACAAACTTTCGC
GAGCAGCAACTTTCGCGAGGTCGAAAAAATCGCGAAATTTGCGACATTTA
CTTTCGCAAATGTGAGTAATTAATAAGATGCCGAAATTTTGATATTTATT
ACGATTTCGAGGCTTTATAGATTTCCAATTCTTTTGAGAATTTTTCGCGA
GCACAAACTTTCGCGAATTGCCCTGTTATGAATTTTCAAACACATTCACT
TTCGTGAAAAAGGCCAAAATTCGCAAAAATCGTGAAAGTTTCTGCTCGCG
AAAGTTTGTACGCCTAAAGTATCTTGAATTAATCTTTTCAACTGATTAGG
ATTTACCTCCAATTTTAAATTTTTCTAATTAAATTTTAACGGAAATGGCT
CGTTTTAGTTTTTTTTTTGGTTGCTTTCCCAGTTCATGCTTAGTTTCAGG
GCTAGGTTGCTAAATGCTTAATGCTAAGATGCTTAATTTTTATCGCCTCA
GGAAAATATTTTGACTGGTACGCGACATTGATCTAATTAATTGATTTATA
TAATTTATATAATTTACTTTTTTTTAGATCGGTTTTCCAGTTGACAAAGA
TGGCTATTCCACATTTGAAGAAAACTCGAGGTAAGCTAGGCATGATACAA
TCTATCTTTTGCAGGAGCAATCTGTCAGAGATGGCATCCAAAATATTTTC
CTTACAAACAGTCTTGATTTATATTATGAACGATGATGCTTTTGACTAAG
CTTTAACTGGCCAACATTAATATTTCAGGAAACATTGTAAATGTCTCAAC
CTTGGGAAGTTCGCGCCCAGTAAGTTAAACATTTTTATTTTCCCTTTGGA
TGAAATGATTCCGAGATCAAATTTTCCATGGCTGTATTTGGACAGTTTAA
GAAAAGTTGATTCGTTGGGATGAACTAATTACTAAAAGGATGTCCCTTCC
TTATCCAGTCTTTGAACTCCTCAAACTGAAAAAAAGTATTAATATTAATA
TTATTAATATATATACTAAATATTTCCCACTCTAAAGAGTGTTGTCGTAA
AAAGTCTTTTCTTTTCTTCATAGCAAATTGGTTTCAGCGCTTATTGCATG
AGCAAAGCAGCATTAGATCAATTCACAAGAGCTGCTGCTATCGAATTAGG
AGCTGATCAAGTTCGTGTCAATTGCGTCAACCCAAGTATCATTGCCACTG
AGAAATGCTTAAACAGTACTGATGCAAACGTTAAGGTGCGTCATTTGTAT
TTGAAATAATTTTCCAAGAAATTGAAAGTTGAGACACCATGCTGAACTAT
TTTTGTCAATACATGTTGTGGTTTTAGTTTATCTTTGCGGTTCTTTTCCA
CCGGAATTTACTTATTTTTTACTTTTCTCAGTCCTTTCAGGCTGCACGAG
GTTGCTAAGCTTCAAAATTTAGAACATCATCATGGCTTAATATAAAATTT
AAAAAAGGAAAGGAAAATCTTTATAGGTTTATGTTATGATCGCAATTTCT
CTCTATGAAAAGTTTTATTTTTTGGGAATTTTACTAGTTGAATACCGTTT
CCCTGAGTTAGCATTATTTTTCGTTATCAGACTGCTATTGAGAGAAGCAA
AACGACACACGCTTTGGGACGTGCTGGTACGGTTGACGAAGTTGCTGCCG
CCATTTTGTTTCTAGCGTCAGGAGCTGCATCGTACATCACAGGTGTTACG
ATGCCAATCGACGGAGGTCGTGGCGACATGATCCCTGTTTGAAATATTAT
TTAGTGTAATTTTAATTGTTAATGGGAATTTTTTGATTGCTATAACGATG
ACAATAAAATACAAGGTTCAGTTGAATTATCGACCGCCGGAGGCGGTTTC
TTTCATAGTGGTACGCTAATCTCGTTTTGCCTTGGCTCATTACTTTGTCT
ACCATTTA

Coding sequence (CDS) from alignment at scaffold_407:4590..7247-

>TCONS_00064050 ID=TCONS_00064050|Name=TCONS_00064050|organism=Clytia hemisphaerica|type=CDS|length=4698bp|location=Sequence derived from alignment at scaffold_407:4590..7247- (Clytia hemisphaerica)
ACTGCTATTGAGAGAAGCAAAACGACACACGCTTTGGGACGTGCTGGTAC
GGTTGACGAAGTTGCTGCCGCCATTTTGTTTCTAGCGTCAGGAGCTGCAT
CGTACATCACAGGTGTTACGATGCCAATCGACGGAGGTCGTGGCGACATG
ATCCCTGTTTGACAAATTGGTTTCAGCGCTTATTGCATGAGCAAAGCAGC
ATTAGATCAATTCACAAGAGCTGCTGCTATCGAATTAGGAGCTGATCAAG
TTCGTGTCAATTGCGTCAACCCAAGTATCATTGCCACTGAGAAATGCTTA
AACAGTACTGATGCAAACGTTAAGGAAACATTGTAAATGTCTCAACCTTG
GGAAGTTCGCGCCCAATCGGTTTTCCAGTTGACAAAGATGGCTATTCCAC
ATTTGAAGAAAACTCGAGGTGCTGCCTCAGGGATCGGTCAGGGTACAGCT
TACATGTTCGCAAAATGTGGCGCCCGACTCGTTGTCACAGATCGCGACGA
AACCAACTTGAAAGAAACGGCCAAGAAATGTGAAGAGATGAGTAAACAGA
AGCCACTGGTCATCGTTGGTGATTTAACCGTTCAAAGTGATCTTGAGAAT
ATCATTAATACCACAATGGAGACATGCAAACAACTTGATGTATTGGTAAA
CAATGCAGGAGACTTGGTGATGGCTACTTGTCTCCAGACCTCCACAGAAG
ATTTCGATAAAATAATGAATATTAACGTCAGATGTCTTCAAATGTTGTTT
TTGATTTTTCCGGAAAAGTTGTGTTGGTAACAGACTGCTATTGAGAGAAG
CAAAACGACACACGCTTTGGGACGTGCTGGTACGGTTGACGAAGTTGCTG
CCGCCATTTTGTTTCTAGCGTCAGGAGCTGCATCGTACATCACAGGTGTT
ACGATGCCAATCGACGGAGGTCGTGGCGACATGATCCCTGTTTGACAAAT
TGGTTTCAGCGCTTATTGCATGAGCAAAGCAGCATTAGATCAATTCACAA
GAGCTGCTGCTATCGAATTAGGAGCTGATCAAGTTCGTGTCAATTGCGTC
AACCCAAGTATCATTGCCACTGAGAAATGCTTAAACAGTACTGATGCAAA
CGTTAAGGAAACATTGTAAATGTCTCAACCTTGGGAAGTTCGCGCCCAAT
CGGTTTTCCAGTTGACAAAGATGGCTATTCCACATTTGAAGAAAACTCGA
GGTGCTGCCTCAGGGATCGGTCAGGGTACAGCTTACATGTTCGCAAAATG
TGGCGCCCGACTCGTTGTCACAGATCGCGACGAAACCAACTTGAAAGAAA
CGGCCAAGAAATGTGAAGAGATGAGTAAACAGAAGCCACTGGTCATCGTT
GGTGATTTAACCGTTCAAAGTGATCTTGAGAATATCATTAATACCACAAT
GGAGACATGCAAACAACTTGATGTATTGGTAAACAATGCAGGAGACTTGG
TGATGGCTACTTGTCTCCAGACCTCCACAGAAGATTTCGATAAAATAATG
AATATTAACGTCAGATGTCTTCAAATGTTGTTTTTGATTTTTCCGGAAAA
GTTGTGTTGGTAACAGACTGCTATTGAGAGAAGCAAAACGACACACGCTT
TGGGACGTGCTGGTACGGTTGACGAAGTTGCTGCCGCCATTTTGTTTCTA
GCGTCAGGAGCTGCATCGTACATCACAGGTGTTACGATGCCAATCGACGG
AGGTCGTGGCGACATGATCCCTGTTTGACAAATTGGTTTCAGCGCTTATT
GCATGAGCAAAGCAGCATTAGATCAATTCACAAGAGCTGCTGCTATCGAA
TTAGGAGCTGATCAAGTTCGTGTCAATTGCGTCAACCCAAGTATCATTGC
CACTGAGAAATGCTTAAACAGTACTGATGCAAACGTTAAGGAAACATTGT
AAATGTCTCAACCTTGGGAAGTTCGCGCCCAATCGGTTTTCCAGTTGACA
AAGATGGCTATTCCACATTTGAAGAAAACTCGAGGTGCTGCCTCAGGGAT
CGGTCAGGGTACAGCTTACATGTTCGCAAAATGTGGCGCCCGACTCGTTG
TCACAGATCGCGACGAAACCAACTTGAAAGAAACGGCCAAGAAATGTGAA
GAGATGAGTAAACAGAAGCCACTGGTCATCGTTGGTGATTTAACCGTTCA
AAGTGATCTTGAGAATATCATTAATACCACAATGGAGACATGCAAACAAC
TTGATGTATTGGTAAACAATGCAGGAGACTTGGTGATGGCTACTTGTCTC
CAGACCTCCACAGAAGATTTCGATAAAATAATGAATATTAACGTCAGATG
TCTTCAAATGTTGTTTTTGATTTTTCCGGAAAAGTTGTGTTGGTAACAGA
CTGCTATTGAGAGAAGCAAAACGACACACGCTTTGGGACGTGCTGGTACG
GTTGACGAAGTTGCTGCCGCCATTTTGTTTCTAGCGTCAGGAGCTGCATC
GTACATCACAGGTGTTACGATGCCAATCGACGGAGGTCGTGGCGACATGA
TCCCTGTTTGACAAATTGGTTTCAGCGCTTATTGCATGAGCAAAGCAGCA
TTAGATCAATTCACAAGAGCTGCTGCTATCGAATTAGGAGCTGATCAAGT
TCGTGTCAATTGCGTCAACCCAAGTATCATTGCCACTGAGAAATGCTTAA
ACAGTACTGATGCAAACGTTAAGGAAACATTGTAAATGTCTCAACCTTGG
GAAGTTCGCGCCCAATCGGTTTTCCAGTTGACAAAGATGGCTATTCCACA
TTTGAAGAAAACTCGAGGTGCTGCCTCAGGGATCGGTCAGGGTACAGCTT
ACATGTTCGCAAAATGTGGCGCCCGACTCGTTGTCACAGATCGCGACGAA
ACCAACTTGAAAGAAACGGCCAAGAAATGTGAAGAGATGAGTAAACAGAA
GCCACTGGTCATCGTTGGTGATTTAACCGTTCAAAGTGATCTTGAGAATA
TCATTAATACCACAATGGAGACATGCAAACAACTTGATGTATTGGTAAAC
AATGCAGGAGACTTGGTGATGGCTACTTGTCTCCAGACCTCCACAGAAGA
TTTCGATAAAATAATGAATATTAACGTCAGATGTCTTCAAATGTTGTTTT
TGATTTTTCCGGAAAAGTTGTGTTGGTAACAGACTGCTATTGAGAGAAGC
AAAACGACACACGCTTTGGGACGTGCTGGTACGGTTGACGAAGTTGCTGC
CGCCATTTTGTTTCTAGCGTCAGGAGCTGCATCGTACATCACAGGTGTTA
CGATGCCAATCGACGGAGGTCGTGGCGACATGATCCCTGTTTGACAAATT
GGTTTCAGCGCTTATTGCATGAGCAAAGCAGCATTAGATCAATTCACAAG
AGCTGCTGCTATCGAATTAGGAGCTGATCAAGTTCGTGTCAATTGCGTCA
ACCCAAGTATCATTGCCACTGAGAAATGCTTAAACAGTACTGATGCAAAC
GTTAAGGAAACATTGTAAATGTCTCAACCTTGGGAAGTTCGCGCCCAATC
GGTTTTCCAGTTGACAAAGATGGCTATTCCACATTTGAAGAAAACTCGAG
GTGCTGCCTCAGGGATCGGTCAGGGTACAGCTTACATGTTCGCAAAATGT
GGCGCCCGACTCGTTGTCACAGATCGCGACGAAACCAACTTGAAAGAAAC
GGCCAAGAAATGTGAAGAGATGAGTAAACAGAAGCCACTGGTCATCGTTG
GTGATTTAACCGTTCAAAGTGATCTTGAGAATATCATTAATACCACAATG
GAGACATGCAAACAACTTGATGTATTGGTAAACAATGCAGGAGACTTGGT
GATGGCTACTTGTCTCCAGACCTCCACAGAAGATTTCGATAAAATAATGA
ATATTAACGTCAGATGTCTTCAAATGTTGTTTTTGATTTTTCCGGAAAAG
TTGTGTTGGTAACAGACTGCTATTGAGAGAAGCAAAACGACACACGCTTT
GGGACGTGCTGGTACGGTTGACGAAGTTGCTGCCGCCATTTTGTTTCTAG
CGTCAGGAGCTGCATCGTACATCACAGGTGTTACGATGCCAATCGACGGA
GGTCGTGGCGACATGATCCCTGTTTGACAAATTGGTTTCAGCGCTTATTG
CATGAGCAAAGCAGCATTAGATCAATTCACAAGAGCTGCTGCTATCGAAT
TAGGAGCTGATCAAGTTCGTGTCAATTGCGTCAACCCAAGTATCATTGCC
ACTGAGAAATGCTTAAACAGTACTGATGCAAACGTTAAGGAAACATTGTA
AATGTCTCAACCTTGGGAAGTTCGCGCCCAATCGGTTTTCCAGTTGACAA
AGATGGCTATTCCACATTTGAAGAAAACTCGAGGTGCTGCCTCAGGGATC
GGTCAGGGTACAGCTTACATGTTCGCAAAATGTGGCGCCCGACTCGTTGT
CACAGATCGCGACGAAACCAACTTGAAAGAAACGGCCAAGAAATGTGAAG
AGATGAGTAAACAGAAGCCACTGGTCATCGTTGGTGATTTAACCGTTCAA
AGTGATCTTGAGAATATCATTAATACCACAATGGAGACATGCAAACAACT
TGATGTATTGGTAAACAATGCAGGAGACTTGGTGATGGCTACTTGTCTCC
AGACCTCCACAGAAGATTTCGATAAAATAATGAATATTAACGTCAGATGT
CTTCAAATGTTGTTTTTGATTTTTCCGGAAAAGTTGTGTTGGTAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040158XLOC_040158Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064050-proteinTCONS_00064050-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064050-exon-scaffold_407-1575043694:7125..7247TCONS_00064050-exon-scaffold_407-1575043694:7125..7247Clytia hemisphaericaexon
TCONS_00064050-exon-scaffold_407-1575043694:6480..6792TCONS_00064050-exon-scaffold_407-1575043694:6480..6792Clytia hemisphaericaexon
TCONS_00064050-exon-scaffold_407-1575043694:5868..5920TCONS_00064050-exon-scaffold_407-1575043694:5868..5920Clytia hemisphaericaexon
TCONS_00064050-exon-scaffold_407-1575043694:5679..5719TCONS_00064050-exon-scaffold_407-1575043694:5679..5719Clytia hemisphaericaexon
TCONS_00064050-exon-scaffold_407-1575043694:5263..5424TCONS_00064050-exon-scaffold_407-1575043694:5263..5424Clytia hemisphaericaexon
TCONS_00064050-exon-scaffold_407-1575043694:4590..4917TCONS_00064050-exon-scaffold_407-1575043694:4590..4917Clytia hemisphaericaexon
TCONS_00064050-exon-scaffold_407-1510915933:7125..7247TCONS_00064050-exon-scaffold_407-1510915933:7125..7247Clytia hemisphaericaexon
TCONS_00064050-exon-scaffold_407-1510915933:6480..6792TCONS_00064050-exon-scaffold_407-1510915933:6480..6792Clytia hemisphaericaexon
TCONS_00064050-exon-scaffold_407-1510915933:5868..5920TCONS_00064050-exon-scaffold_407-1510915933:5868..5920Clytia hemisphaericaexon
TCONS_00064050-exon-scaffold_407-1510915933:5679..5719TCONS_00064050-exon-scaffold_407-1510915933:5679..5719Clytia hemisphaericaexon
TCONS_00064050-exon-scaffold_407-1510915933:5263..5424TCONS_00064050-exon-scaffold_407-1510915933:5263..5424Clytia hemisphaericaexon
TCONS_00064050-exon-scaffold_407-1510915933:4590..4917TCONS_00064050-exon-scaffold_407-1510915933:4590..4917Clytia hemisphaericaexon
TCONS_00064050-exon-scaffold_407-1491911889:7125..7247TCONS_00064050-exon-scaffold_407-1491911889:7125..7247Clytia hemisphaericaexon
TCONS_00064050-exon-scaffold_407-1491911889:6480..6792TCONS_00064050-exon-scaffold_407-1491911889:6480..6792Clytia hemisphaericaexon
TCONS_00064050-exon-scaffold_407-1491911889:5868..5920TCONS_00064050-exon-scaffold_407-1491911889:5868..5920Clytia hemisphaericaexon
TCONS_00064050-exon-scaffold_407-1491911889:5679..5719TCONS_00064050-exon-scaffold_407-1491911889:5679..5719Clytia hemisphaericaexon
TCONS_00064050-exon-scaffold_407-1491911889:5263..5424TCONS_00064050-exon-scaffold_407-1491911889:5263..5424Clytia hemisphaericaexon
TCONS_00064050-exon-scaffold_407-1491911889:4590..4917TCONS_00064050-exon-scaffold_407-1491911889:4590..4917Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_407supercontigscaffold_407:4590..7247 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1915.16	1970.06	2126.46	2151.86	57.1449	44.9709	26.2633	22.4902	21.7784	21.2656	18.8823	16.9501	6.71723	6.50157	5.25238	6.48376	3.47932	3.42411	0.928846	0.511194	5.01907	4.4669	1021.1	840.204	2.25047	3.68812	44.4611	60.0219	483.443	538.592
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR016040NAD(P)-bd_dom
Blast
[Close]
BLAST of TCONS_00064050 vs. Swiss-Prot (Human)
Match: DCXR (L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 5.207e-31
Identity = 86/249 (34.54%), Postives = 132/249 (53.01%), Query Frame = 3 
Query:   96 FSGKVVLVTGAASGIGQGTAYMFAKCGARLVVTDRDETNLKETAKKCEEMSKQKPLVIVGDLTVQSDLENIINTTMETCKQLDVLVNNAGDLVMATCLQTSTEDFDKIMNINVRSVFQLTKMAIPHL--KKTRGNIVNVSTLGSSRPQIGFSAYCMSKAALDQFTRAAAIELGADQVRVNCVNPSIIATE--KCLNSTDANVKTAIERSKTTHALGRAGTVDEVXXXXXXXXXXXXXYITGVTMPIDGG 830
             +G+ VLVTGA  GIG+GT       GAR+V   R + +L    ++C  +   +P+ +  DL    D E      + +   +D+LVNNA   ++   L+ + E FD+   +N+R+V Q++++    L  +   G IVNVS+  S R     S YC +K ALD  T+  A+ELG  ++RVN VNP+++ T   +   S     KT + R      LG+   V+ V  AILFL S  +   TG T+P++GG
Sbjct:    5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGI---EPVCV--DL---GDWEAT-ERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIP----LGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGG 240
The following BLAST results are available for this feature:
BLAST of TCONS_00064050 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCXR5.207e-3134.54L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 ... [more]
back to top