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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064010 ID=TCONS_00064010|Name=TCONS_00064010|organism=Clytia hemisphaerica|type=transcript|length=2553bp
AAGTGGCTTTTAAAGGACTTGGAAAAAATGATAATATCATCCAGATATAT
TAAGCATCGGTCCCAAGTTAAGCCTCGTAAGATTGTCTCCATTAAGCGCT
GAAATGTAGAGGGTCCCGTGCTTATTCCAAAAGGAACAACGTTAAATTCA
TACAAACCTTGGGGTGATGTAAAAGCCGCTAGGGGTTTCGATTCCTCATC
TAGTTCGATTTGCCAATATCCACTCCTAAGGTCTAGTGTCGTGAAGTACT
TATTCCATGTAAGGCGTCTAACGTATCTTGGATATGAGGGAGTGGATAAC
TATCTTTGCGGATAATATTGTTCAGTTTCCTATAATCTATACAGTATCGA
TCATTCTTTCCTGGCTTCTTAAACTAAAATTACTGGAAAACTATATGGAC
TCGTTGACTCCCTAATTACATCTTGTTCCAACATATCCTTGATGTGttct
tttatcttcttaccATCTTCGTGCGATGCACGATAAGGCTTTGATCCGAT
TGGTACGTAATTTTCGATGTCaatatgatgttttatgatTGAAGTACGTC
CAAGTTCGCTTTGGTCTACAGCAAAGATATCTCCGTACTCTCTGAACAAT
CGTTGGAGCTGTGCTTGTTGCTGGTCGTTTAAGTCGCTGTCTGTAAGGTC
GACTTCAAGTTTCTCTTGTGGTTTCGTTTGCATTTGTATTATTGGTACCT
CTTCTATTACTGTGACTTCATCGATTGAAGCTACATTTGTTCCTGCATAG
AGTGTTACTCGCTCTCCCGATGGATTTAGAATTCTGCATGGGACTTGCTG
TCTATTTATTATCGTCACTATTGAAGCGCAAATCACTTTctgtttttctg
aaaagaagGGTAGGTTTTCCACTATATAATCTTGTCCTTCAACTGGTTTT
AGCGATGCGACACCTGGaataattttttcactgaacgGCTCTAGCTGTAC
ATCCTCTATTACGTGGACTTTTCTTTCTGCTGGAATGACTGGTACTCCGT
TTGATAGGTTATCTTCGGCTTTGTTTGTTGCTCCTCCTTTGTTGTTGTTT
CGTTGTGATGGTCTATTACTGTTTTGTTGTTCTTGGATGAAATCGTATAT
TTCGTCACACGCCCATTGTTTAACGTCAAAATCTAACTTTATTATAAACC
TCTCGTGACATATCATAGTGTGTTTGTTTACATCAACCACTGCTCTAGCT
GACCTAAGGAAATCTCTGCCTAAGATTCCATCATACTCTGCACAATGTGT
TACTAAAAATCTTTGGCCTTGCAAgataaacttttgaaaatctaGATCGA
CGTATATTTCTCCATTTACTGCGTTTTCTCCATTAACTGTTTCAATTATT
TGTGGTGAATAATACAATGGTACTATGTCTCTCCATAATGCATTGTAAAT
AACTGACTGTACAACTGAGACAGATGCGCCGGTATCTATCAAGAATCTAA
ATTTTGCAGCCATAAATCCAAACTGCAGCTGTCATCTCGTCATCTTGGCC
AATAGTATGACATGAGTATTTTACGTCATAGCAATCGTTATATTCGTTGT
TTGGGTCCAAAGCCACGTAAAAGTCGTCTTGATATCGCAGCTGGTTGTTC
CTGTTGTTAATTCTGGAACGATGTTTTCTTGCTGCCTCCCTACTTTGTCT
ATTGCGTATCATATTGATCGATTGATTTCTGTTGAAATTGGTTGGTGCTG
GAAGGGCTGGAAATCTTGGAGTAGTTGATCTTTGTTGCTACCATGGTAGT
CTAAACTGCACGTGTCTGTGTACTGGTGTTTGAATTCGAACTGGCCATCT
TTGGCTCTGAAATGGTGCATTTCCTGGTCCGTTTCTGTTAGGATATCGTC
GAGGGTTTGTATCTCGGCCTCCATTTCTGCAGTCTCGTGCAAAGTTTCCG
TACTTTCCACAGTTGTAGCAACCATCTTTGCGAAAGGATCCTTGCTTATT
CTGAGAAATTGGTCTTTGGTGACGATTATCTCCTGATTCTAGTTTTGATA
GTCTTTGCTTAACTCTTTGTATCTCATTAGTACTGTCATTCtttgtaaaa
tttattttctggttACTTGTTTTACTTTCCACTAGATTCTTTGCTAATGA
TCTGAGGACTGGTATCAGTTTATCAACTTCGCTAGACTTTTCTTCTTCTG
ATGTAGAAATTAAGGCTGATTTTTTTGCTAGCGCAGCTGTGTATGCTTCT
TCTAAAGTCTCTGGAGTTTGGGTtataacataattttttatctttttagg
tAGGCCTTCCATAAAGATTTGTAGTATATCATCGTCACTAACCTTATGTT
TCTTTGCTTCGTTTTGAATTGCTCGCTTGAATTCTTGAATGGTTTCGCTG
TCTTTCTTTTTACGTCGAGTGAGTTGCTGTCTCTTATAGAATTTGTGATT
GACTGGATTGTATTCTGTAGTAAATCTATCTTTAAATGTGTTAAAGTCGC
CCCTTACTTCTACCTCTAGTCCATTGTAGAATCTTAACGGTTCCTGGCCT
AAGAAGCTTGAAAAAAGTACTGATTTCTGACCATAGGCAACCCCATTGAA
GTC Run BLAST on NCBI protein sequence of TCONS_00064010-protein >TCONS_00064010-protein ID=TCONS_00064010-protein|Name=TCONS_00064010-protein|organism=Clytia hemisphaerica|type=polypeptide|length=364bp
MAAKFRFLIDTGASVSVVQSVIYNALWRDIVPLYYSPQIIETVNGENAVN
GEIYVDLDFQKFILQGQRFLVTHCAEYDGILGRDFLRSARAVVDVNKHTM
ICHERFIIKLDFDVKQWACDEIYDFIQEQQNSNRPSQRNNNKGGATNKAE
DNLSNGVPVIPAERKVHVIEDVQLEPFSEKIIPGVASLKPVEGQDYIVEN
LPFFSEKQKVICASIVTIINRQQVPCRILNPSGERVTLYAGTNVASIDEV
TVIEEVPIIQMQTKPQEKLEVDLTDSDLNDQQQAQLQRLFREYGDIFAVD
QSELGRTSIIKHHIDIENYVPIGSKPYRASHEDGKKIKEHIKDMLEQDVI
RESTSPYSFPVILV Run BLAST on NCBI transcript from alignment at scaffold_405:22574..25126 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064010 ID=TCONS_00064010|Name=TCONS_00064010|organism=Clytia hemisphaerica|type=transcript|length=2553bp|location=Sequence derived from alignment at scaffold_405:22574..25126 (Clytia hemisphaerica)
GACTTCAATGGGGTTGCCTATGGTCAGAAATCAGTACTTTTTTCAAGCTT
CTTAGGCCAGGAACCGTTAAGATTCTACAATGGACTAGAGGTAGAAGTAA
GGGGCGACTTTAACACATTTAAAGATAGATTTACTACAGAATACAATCCA
GTCAATCACAAATTCTATAAGAGACAGCAACTCACTCGACGTAAAAAGAA
AGACAGCGAAACCATTCAAGAATTCAAGCGAGCAATTCAAAACGAAGCAA
AGAAACATAAGGTTAGTGACGATGATATACTACAAATCTTTATGGAAGGC
CTacctaaaaagataaaaaattatgttataACCCAAACTCCAGAGACTTT
AGAAGAAGCATACACAGCTGCGCTAGCAAAAAAATCAGCCTTAATTTCTA
CATCAGAAGAAGAAAAGTCTAGCGAAGTTGATAAACTGATACCAGTCCTC
AGATCATTAGCAAAGAATCTAGTGGAAAGTAAAACAAGTaaccagaaaat
aaattttacaaaGAATGACAGTACTAATGAGATACAAAGAGTTAAGCAAA
GACTATCAAAACTAGAATCAGGAGATAATCGTCACCAAAGACCAATTTCT
CAGAATAAGCAAGGATCCTTTCGCAAAGATGGTTGCTACAACTGTGGAAA
GTACGGAAACTTTGCACGAGACTGCAGAAATGGAGGCCGAGATACAAACC
CTCGACGATATCCTAACAGAAACGGACCAGGAAATGCACCATTTCAGAGC
CAAAGATGGCCAGTTCGAATTCAAACACCAGTACACAGACACGTGCAGTT
TAGACTACCATGGTAGCAACAAAGATCAACTACTCCAAGATTTCCAGCCC
TTCCAGCACCAACCAATTTCAACAGAAATCAATCGATCAATATGATACGC
AATAGACAAAGTAGGGAGGCAGCAAGAAAACATCGTTCCAGAATTAACAA
CAGGAACAACCAGCTGCGATATCAAGACGACTTTTACGTGGCTTTGGACC
CAAACAACGAATATAACGATTGCTATGACGTAAAATACTCATGTCATACT
ATTGGCCAAGATGACGAGATGACAGCTGCAGTTTGGATTTATGGCTGCAA
AATTTAGATTCTTGATAGATACCGGCGCATCTGTCTCAGTTGTACAGTCA
GTTATTTACAATGCATTATGGAGAGACATAGTACCATTGTATTATTCACC
ACAAATAATTGAAACAGTTAATGGAGAAAACGCAGTAAATGGAGAAATAT
ACGTCGATCtagattttcaaaagtttatcTTGCAAGGCCAAAGATTTTTA
GTAACACATTGTGCAGAGTATGATGGAATCTTAGGCAGAGATTTCCTTAG
GTCAGCTAGAGCAGTGGTTGATGTAAACAAACACACTATGATATGTCACG
AGAGGTTTATAATAAAGTTAGATTTTGACGTTAAACAATGGGCGTGTGAC
GAAATATACGATTTCATCCAAGAACAACAAAACAGTAATAGACCATCACA
ACGAAACAACAACAAAGGAGGAGCAACAAACAAAGCCGAAGATAACCTAT
CAAACGGAGTACCAGTCATTCCAGCAGAAAGAAAAGTCCACGTAATAGAG
GATGTACAGCTAGAGCcgttcagtgaaaaaattattCCAGGTGTCGCATC
GCTAAAACCAGTTGAAGGACAAGATTATATAGTGGAAAACCTACCcttct
tttcagaaaaacagAAAGTGATTTGCGCTTCAATAGTGACGATAATAAAT
AGACAGCAAGTCCCATGCAGAATTCTAAATCCATCGGGAGAGCGAGTAAC
ACTCTATGCAGGAACAAATGTAGCTTCAATCGATGAAGTCACAGTAATAG
AAGAGGTACCAATAATACAAATGCAAACGAAACCACAAGAGAAACTTGAA
GTCGACCTTACAGACAGCGACTTAAACGACCAGCAACAAGCACAGCTCCA
ACGATTGTTCAGAGAGTACGGAGATATCTTTGCTGTAGACCAAAGCGAAC
TTGGACGTACTTCAatcataaaacatcatattGACATCGAAAATTACGTA
CCAATCGGATCAAAGCCTTATCGTGCATCGCACGAAGATggtaagaagat
aaaagaaCACATCAAGGATATGTTGGAACAAGATGTAATTAGGGAGTCAA
CGAGTCCATATAGTTTTCCAGTAATTTTAGTTTAAGAAGCCAGGAAAGAA
TGATCGATACTGTATAGATTATAGGAAACTGAACAATATTATCCGCAAAG
ATAGTTATCCACTCCCTCATATCCAAGATACGTTAGACGCCTTACATGGA
ATAAGTACTTCACGACACTAGACCTTAGGAGTGGATATTGGCAAATCGAA
CTAGATGAGGAATCGAAACCCCTAGCGGCTTTTACATCACCCCAAGGTTT
GTATGAATTTAACGTTGTTCCTTTTGGAATAAGCACGGGACCCTCTACAT
TTCAGCGCTTAATGGAGACAATCTTACGAGGCTTAACTTGGGACCGATGC
TTAATATATCTGGATGATATTATCATTTTTTCCAAGTCCTTTAAAAGCCA
CTT Coding sequence (CDS) from alignment at scaffold_405:22574..25126 >TCONS_00064010 ID=TCONS_00064010|Name=TCONS_00064010|organism=Clytia hemisphaerica|type=CDS|length=1095bp|location=Sequence derived from alignment at scaffold_405:22574..25126 (Clytia hemisphaerica)
ATGGCTGCAAAATTTAGATTCTTGATAGATACCGGCGCATCTGTCTCAGT
TGTACAGTCAGTTATTTACAATGCATTATGGAGAGACATAGTACCATTGT
ATTATTCACCACAAATAATTGAAACAGTTAATGGAGAAAACGCAGTAAAT
GGAGAAATATACGTCGATCtagattttcaaaagtttatcTTGCAAGGCCA
AAGATTTTTAGTAACACATTGTGCAGAGTATGATGGAATCTTAGGCAGAG
ATTTCCTTAGGTCAGCTAGAGCAGTGGTTGATGTAAACAAACACACTATG
ATATGTCACGAGAGGTTTATAATAAAGTTAGATTTTGACGTTAAACAATG
GGCGTGTGACGAAATATACGATTTCATCCAAGAACAACAAAACAGTAATA
GACCATCACAACGAAACAACAACAAAGGAGGAGCAACAAACAAAGCCGAA
GATAACCTATCAAACGGAGTACCAGTCATTCCAGCAGAAAGAAAAGTCCA
CGTAATAGAGGATGTACAGCTAGAGCcgttcagtgaaaaaattattCCAG
GTGTCGCATCGCTAAAACCAGTTGAAGGACAAGATTATATAGTGGAAAAC
CTACCcttcttttcagaaaaacagAAAGTGATTTGCGCTTCAATAGTGAC
GATAATAAATAGACAGCAAGTCCCATGCAGAATTCTAAATCCATCGGGAG
AGCGAGTAACACTCTATGCAGGAACAAATGTAGCTTCAATCGATGAAGTC
ACAGTAATAGAAGAGGTACCAATAATACAAATGCAAACGAAACCACAAGA
GAAACTTGAAGTCGACCTTACAGACAGCGACTTAAACGACCAGCAACAAG
CACAGCTCCAACGATTGTTCAGAGAGTACGGAGATATCTTTGCTGTAGAC
CAAAGCGAACTTGGACGTACTTCAatcataaaacatcatattGACATCGA
AAATTACGTACCAATCGGATCAAAGCCTTATCGTGCATCGCACGAAGATg
gtaagaagataaaagaaCACATCAAGGATATGTTGGAACAAGATGTAATT
AGGGAGTCAACGAGTCCATATAGTTTTCCAGTAATTTTAGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064010-exon-scaffold_405-1491911889:22574..25126 | TCONS_00064010-exon-scaffold_405-1491911889:22574..25126 | Clytia hemisphaerica | exon |
| TCONS_00064010-exon-scaffold_405-1510915933:22574..25126 | TCONS_00064010-exon-scaffold_405-1510915933:22574..25126 | Clytia hemisphaerica | exon |
| TCONS_00064010-exon-scaffold_405-1575043694:22574..25126 | TCONS_00064010-exon-scaffold_405-1575043694:22574..25126 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_405 | supercontig | scaffold_405:22574..25126 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004190 | aspartic-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004190 |
aspartic-type endopeptidase activity |
Blast
The following BLAST results are available for this feature:
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