TCONS_00063936 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063936
Unique NameTCONS_00063936
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length570

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063936 ID=TCONS_00063936|Name=TCONS_00063936|organism=Clytia hemisphaerica|type=transcript|length=570bp
CTTAAAAGCACGCGTGAATTTATGACAAAAACAAGTATATTTTTCTACTT
TAGTCAAGGGCATAATTAACGCATAATTCTGAAGTTTTCATACATTCTTC
TCTTTTCAGGTAATCTCTCAGACGGACACGGCTACGGACCACATCGGTCG
ACGACTCTCCATAAATGAAATTGTACGGTCAGATAGCACTATGGGTTTAC
ACTCTCTTGTCTCTTACATTATTGGCTAGTTGCTTGCCACACGACCCATC
AAATGAAAAATCACGTGGTCAACCATCCTTCATAATCGACTATCAAAATG
ATTGTTTCCTTAAAGATGGAAAGCCGttccggtatatttccggtGGATTA
CATTATTTCCGGATTCCTTCGTTCTATTGGAAAGATCGAATACAAAAAGC
AAAAGCACTTGGTTTAAACACTATACAGACCTATATACCATGGAATTTCC
ACAATCCAGAACCAGGGGTATACAAATTCAATGGCGAACAAGATTTATTG
AAGTTTATAGATGTGGTACAAGAAGAAGGCATGCTGTTGATTCTACGCCC
AGGACCTTATGTTGATGCTG
Run BLAST on NCBI

transcript from alignment at scaffold_404:438966..439535-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063936 ID=TCONS_00063936|Name=TCONS_00063936|organism=Clytia hemisphaerica|type=transcript|length=570bp|location=Sequence derived from alignment at scaffold_404:438966..439535- (Clytia hemisphaerica)
CTTAAAAGCACGCGTGAATTTATGACAAAAACAAGTATATTTTTCTACTT
TAGTCAAGGGCATAATTAACGCATAATTCTGAAGTTTTCATACATTCTTC
TCTTTTCAGGTAATCTCTCAGACGGACACGGCTACGGACCACATCGGTCG
ACGACTCTCCATAAATGAAATTGTACGGTCAGATAGCACTATGGGTTTAC
ACTCTCTTGTCTCTTACATTATTGGCTAGTTGCTTGCCACACGACCCATC
AAATGAAAAATCACGTGGTCAACCATCCTTCATAATCGACTATCAAAATG
ATTGTTTCCTTAAAGATGGAAAGCCGTTCCGGTATATTTCCGGTGGATTA
CATTATTTCCGGATTCCTTCGTTCTATTGGAAAGATCGAATACAAAAAGC
AAAAGCACTTGGTTTAAACACTATACAGACCTATATACCATGGAATTTCC
ACAATCCAGAACCAGGGGTATACAAATTCAATGGCGAACAAGATTTATTG
AAGTTTATAGATGTGGTACAAGAAGAAGGCATGCTGTTGATTCTACGCCC
AGGACCTTATGTTGATGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040073XLOC_040073Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063936-exon-scaffold_404-1575043694:438966..439535TCONS_00063936-exon-scaffold_404-1575043694:438966..439535Clytia hemisphaericaexon
TCONS_00063936-exon-scaffold_404-1510915933:438966..439535TCONS_00063936-exon-scaffold_404-1510915933:438966..439535Clytia hemisphaericaexon
TCONS_00063936-exon-scaffold_404-1491911889:438966..439535TCONS_00063936-exon-scaffold_404-1491911889:438966..439535Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:438966..439535 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.144582	0.367365	1.82295	0.935402	0.20925	1.53924	0.834969	0.518976	0.884965	2.2	2.84509	4.27296	1.74842	4.4407	1.04698	2.1099	1.2751	2.55013	1.50853	2.9657	1.82622	2.15443	1.05593	1.4689	2.80786	2.09197
Blast
[Close]
BLAST of TCONS_00063936 vs. Swiss-Prot (Human)
Match: BGAL (Beta-galactosidase OS=Homo sapiens GN=GLB1 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 4.070e-36
Identity = 60/104 (57.69%), Postives = 76/104 (73.08%), Query Frame = 3 
Query:  258 KSRGQPSFIIDYQNDCFLKDGKPFRYISGGLHYFRIPSFYWKDRIQKAKALGLNTIQTYIPWNFHNPEPGVYKFNGEQDLLKFIDVVQEEGMLLILRPGPYVDA 569
            ++  Q  F IDY  D FLKDG+PFRYISG +HY R+P FYWKDR+ K K  GLN IQTY+PWNFH P PG Y+F+ + D+  F+ +  E G+L+ILRPGPY+ A
Sbjct:   25 RNATQRMFEIDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWPGQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICA 128
The following BLAST results are available for this feature:
BLAST of TCONS_00063936 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BGAL4.070e-3657.69Beta-galactosidase OS=Homo sapiens GN=GLB1 PE=1 SV... [more]
back to top