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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063877 ID=TCONS_00063877|Name=TCONS_00063877|organism=Clytia hemisphaerica|type=transcript|length=423bp
CAACAATTTTGAATCTAAGAAGGCTGGGTACGAACTTGTCGTCACAATTA
GTGGCCGCCATTTTGACGAAAACATTCTGCGAGTCaaccaaggaaaattt
tgaagtGAAGTACACTAAACTTTCATTGATTTTCTTACATTAATTTTGGA
TATACACTAATTTTTACTTTCTAAAATGCCTCCAGCTGCTGCTAGTGTTG
GACTCAGTGTCCAAGTTGATCAAATGAGAAAGACAAATGAACAACTAAAG
CGAGAACTAAACATTAAGAGAGCAAAATTCTCTGACTCCGCTAAAGAATT
GATTGCACACTGCGAGTCTAATCAAAGAAATGATCCGTTAATTCAAAAAA
TCCCACCATCCGACAACCCATTCCGTGACCATCGACCTTTCTGCTCAGTC
TTGTGAATTTTGTCGTGTTGTTG Run BLAST on NCBI transcript from alignment at scaffold_404:257547..266523+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063877 ID=TCONS_00063877|Name=TCONS_00063877|organism=Clytia hemisphaerica|type=transcript|length=8977bp|location=Sequence derived from alignment at scaffold_404:257547..266523+ (Clytia hemisphaerica)
CAACAATTTTGAATCTAAGAAGGCTGGGTACGAACTTGTCGTCACAATTA
GTGGCCGCCATTTTGACGAAAACATTCTGCGAGTCaaccaaggaaaattt
tgaagtGAAGTACACTAAACTTTCATTGATTTTCTTACATTAATTTTGGA
TATACACTAATTTTTACTTTCTAAAATGCCTCCAGCTGCTGCTAGTGTTG
GACTCAGTGTCCAAGTTGATCAAATGAGAAAGACAAATGAACAACTAAAG
CGAGAACTAAACATTAAGAGAGCAAAATTCTCTGACTCCGCTAAAGAgta
agttttctttttatagtTCACCAGTTTTATTAATTCGATGCAACCCTTTA
AATGCCAAAATACTGTTAAATGCATTCAGCTGCCAACAAAAGGGATAGCT
CTCAACTCAAATATAAGAATAGTATTCACCATTTCCAGATAGGGTTCATG
GCGAGTGTGTTAGATATATATTTTCACCTTGANGAGAATAGTATTCACTA
TTTCCAGATAGGGTTCATGGCGAGTGTGTTAGATAGATAATATATTTTCA
CCTtgaatgatatcataaagaaaaatttacaacTGACCTATTAAAgctaa
ataaaaatttcattttttaaagtaGCTAAAGTTATATACAAAATGTCCAA
GGTGTATAACCTTAGCCCATAAGATCTATGTGTGTTTTAATATATGTTTG
CTGTTACAGGGAAAAAAAGCATAACTActgtaaaaatactaaaaaccaGA
CAGTGTCAATTGAACCAGCGAaagccgaatcaatcgaacgcaatcgaatt
gcaatcaaatattacccaggatttgttgttcgattgcttcgattacgttc
gattgtattcgattacgtttgatcgattcaattatattagattttattcg
ctttggtatggtaCTTCAAGCACTCGGCACCGCCCacattaaaaagctct
aacagagtgatccaatttaatttaatcgcaatcaaactcatcaaacataa
tcgtaatcgaacgaaatcaaagattaatccaatgtaattgacaatcaatc
gaaccaatcgaacatagtcaactatcaatcgaaccaatctaaccttactc
aaacgcaatcgaacacaatcgaatattacccaggaatcggcagttcgatt
gagattcgattacgttcgacaatcgaatcgcaattattcgatcacgttcg
attacgttcgattggttcgattgtgatttttgttcgaagttgttcgattg
acaccgtctggtaaaAATACTAACTAGACTTTTTATGATCAGTTTTAAAT
GGGGGAGCTATTGGATTGGTATTGGATACAGTAGGAAAACTAAGAAAAGA
GGTTTAGTGGTGTCATagtgaaatagaccttttttcaaagaggacgtcct
gttgaataattatgtactccagccataaaaacaatgatagagccatgcat
aattactgtatcatgcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNtgcatattgtaataattatgcat
ggttttatcattgtttttctgctggactacataattattcaacagggtgg
gctctttgaaaaaaggtctattgtagtAATACAACAAAGTTTTAGCTTCA
GAGTCAATGTCCCAAGAGGGAGACTGATGAGACTTGATGTTTGGATGAAT
AATGATGAAGCGATAGGGGTGACAAAGTAGTTTTAGAAAATTGAGGATCA
CAGTCTAAGTTTTCAGCAATAGTAACACCTAAATAACTTACCGTAAGTTG
GTATGatatcgacatcccttgtctaattctgacacccttctttagagaca
ggaataatatgaaagcttgaatcactgattgaaaaaggatttttcCTCTC
taaccactaagcaaagaaaaacagtttcaacccttctatcaatttcagct
gataaaaagggtgtcggaattagaggagggatgtccacattagaccaagt
tacggtaagtTATTTAGGTGTTACTATTGATGAAAACCTAGACTGTTCTT
GAAAGTTCAAGCTTCTGTCCGCTCAGTCTGAAGTTAGGGTTATTTGTAAT
ATTTActcttttgaagccttcaatCATCCAATTCCATTATTAATAATTCA
CTTTTTATcactgttttttgttttgtaaaaaaaggtatctttctttccac
ttttgattgaaatgaCCTAAAGTTGTAGCAAAgcaacaaaaaaagttttt
ttttcggaattcagTTTGACTGTAGTTGGATCAATTTCAATAGCTCTCGT
CTAATTTTGTCACCCTTTTTAAAGATAGAAATAATCGGAAGGTCTGGATA
AATAGCTATGCATACCTCTTTCTCGCCAATATCATGGGATTCCATTAGAT
AGTAAATCTCATTTGTGCTGTAACTTTGTGTAATGCTGATGATTCTGCTA
AAAGACGTGCCCACGTGCCCTACTTTTTTCACGTGCCCGCGTGCCCACTA
TTTTGACATGCCCACGTGCCCTCTAAAATTTTGCATGCCCTCTAAAATTT
TGCGTGCCCATGTGCTTAGAATATGAATTGTAATTAATGAGAAAAGTAAG
CATTCatttattaaaaattaaaaaataaaaaattttagagGGTACATGGA
CACGCAAAATTTTAGAGGGCACGCGAAATTTCACAAGGTACGTGGGCACA
TCAAAATGGTGGGCACGTGAAAAAAAGTAGGGCAAGTGGGCACTCagggc
acgtcatttagcagactcaatGCTCACATAGCGTACACTTGCCTAATCCC
GGACagttttcaatgttttcaatcaaatctcaagcacaagttatcaaatg
aaaaagtttttgttaaaagaacaaaattcaacctttccccTACTTTTCCA
AACAAAAATTTCGAATATCCCATTTGCCACtaaataaatataatataaac
aaaaacattaagCTCCCAAACGTCCCTAATTCGGGACGATGTCTCTTTTC
TACAAAATCTAGCGAACTTCCACTTGaaaatcagagtttcaaaatggcaa
attttgcggaatttaatttcgcgaatgagccgatttcaaaagtttcatgg
aatttaatttcgcgattgaaaaatttcaaaagaatttttgttacagagaa
aatgtttttcatatttttcatcgatttcaagACATATTTCAGTCACATTA
ACAAACTgtaacaacaaaataataacatcaaatatGAATGTTTCTATGAT
ATGTCATGATTAAACTTCATCCATAGTGGGCAACTAAAAATCTTCGAACC
CGGGGCTACACCATACTCATATGCGCAAAACGGTGCAATCGAATCACACC
TTCGAATTTGGAGGTCTTGTTCCTTTTAGGAACACTAAAGATCCCAGTTA
AAAGTCCTGAGGACTACAAACTGGAAAGGAAACATCGccgaaagaagaag
aaaaaatcgaatttcgcggaatttaatttcgcaatttcgcaattttggtg
tgtttcacggaatttaattttgtgacTTGTCTAATCTCGTCATAGCAGCT
ATCTGATTTGCAAAGTAGTTACGAGTAGTTAGAGTGAATTTTTTAACAGC
TTTTTCAGAAGGTTTTATctataaacattttaaagaccagatagTTTCTA
TGACGAAATTAGATAAAGTGTGTGTAATATCGGCATTACACAAAGTTCGa
tagattttattgaaaattctgAATTATGAATAAATCAGCTCCTTTCTTGT
TTTATATAAGGGAAGCCATCCAATCATCCAAACTTGTCACAAAAACGTCG
ATTGGACGTttggggtggggggggggggggggggggggggggggttagtg
AGTGTGTAGGTTGTGGGCATTTAATTTACATGCTTCTTTTTTATCGCTTT
CtctgttttgaaaaccaaaacaaagggCCTGACGTCTCGAGTTCTATTTG
CTTGGCAGCCCGCATGGCCCTTGAACTTTTGCAGAAGGCTGGTTTATTCT
GCTGCTATATGTTACGGAGTTGATTAAGTCCtggaattttcataaaaaag
tttagaaTTGTCTCCATTATTTTTTGGATATGAATTATGCGAGCCATAGA
CAACGTTAATTGAATGGGGTGGGGGCTCGTGAAATTTTTCGTGGCAAGTC
TTGAGTTTGGTTGGCTTCCCTAACCAAGCTTTCCAAAAGCTAACCATCTA
TTGTCAGAGTTTCTAAATATTTCATATGTTAACAATCATCAGCTTCAAAT
CTCAGACATGTCtagaaaatagaccttttgctagacGCAACGTCATGTTG
GATAATTAATAACTCCAGCATTAAACATTGAAGAAAAACAAGGTTTACAC
TTATGATAATTATGCGTTaatgtgtcattgtttttgTGCTGGAGTGTTTC
GTTATCCAACAACAACCAATGACATCGCGTCTAGCAAAAAGGCCATGTTA
TGGTCATTGTTTGATTTAGCaaatttatgtatttttgaaattagaaaatt
tgGTGCCGGATAACTACAgctcctaaatccgacagcaaAAAAATGATTGT
CGTTCTTCTTTCTATTCTCAAATCTAATGGAAAATGAGGTCTTTCAACTT
CTACTTCAAATAAAGTGGCAACCAAACTAGGTTTTCAGCCAAGTACAAAA
GCAATGTTTCATATTATACAAAACTCATTTCCTTTGTTATATGATCATTT
AAAATTAGAAATAGCGTAAAAAAttaccacaaaaaagtttctctatttGA
AATGAATGTTCTTAAGATAACCTAAGCTTTCAAAAGATGAATTCTTTTGC
ACTGACAATTTCTTTTGGCtgattgttttttattcatGATTATTTTTTTG
CCGACGAATACTTTGTTACCAAATGATTTAAATtactatgattttttttg
tttcttttttaatggAAGTACTTGTTTGGATGCTAAAAATTCAGATTAAA
TGTACTGTTTACAACAaagtattcttatgaaattaaagagaatgcaatTG
TTACTGAAAACAACATTCACTCTATGGCAAAACTGTGTCGGTAATGACAA
AATCTCTATTCAAATTTCTTATATGAGATGGAATATTTGGCCAAATTTTT
TACGGTAAAAGTAAATATTATACAGCATTATAGATgtcaaataaatccat
ttttatgttgaaaaaggCCAGTTGGCCGAAATATTCATAGAAAAATGATG
TGTTATCTCTGACTGCATTATAGATGTATAGATATATATTCAAAGTATCT
AAATTTCGAATCTCTGTATTACTGCGATACAAAAATTTAAAGTATATTTT
ATACCATGATTGAAGCAAGctaaaacaagacgacttaaagtcgaaaattt
cgcctagaatttaaactacataggaaaaacaagaagtagaaattgaagcc
aatttgaaatctactttacatcgagccttgatgaaacaattttacaaaaa
caacgaggcttaaaatcgctaaaaaagagaccaatttaagaacaactatt
gtttaatttttaagaactaataaacaaaggtaatatcaccgtctatcaaa
agttatttatttgattcttataaagcaaatgcttatataagaaaaatgaa
tacgctcatattgtgcgccatctcttgtttattttgtaagagctaattac
cgaaaggtatattaccgtctatcaagagttattagcgagattatgtatcg
gagatattctacggctacggttgcggggctgcctgTACGGGTCGTCaaca
aaggcgacatgtcgttgtctactttgctctgtacgggaaaaacaccaaaa
caccgtataaggacatgtttttttttgactgtaccaaagtcaggttttcg
aaaatcgtgaaaatcactatattttaattatttcgtcattcgcatgatga
attttaccaaaattttgatatgtattgaaatttgggaagggctttaaaat
gagctatttgaaatttcaaaattcggagtatttcaggattaattaatcat
ggAGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATATCTCACT
CCATGACTCATTATTCGGTCCTGAGGAGGTTTCTATGCATGCCTGAGGTa
gcctaaaatcataaaatagcctgaggagtaattttttttaaagatcgGAG
TTAGTTATGATCAagacttttttaatcatttttcactcattttaacaatt
cccattttctttagttcgttcctttcttatcaactaaacaaaaatctcaa
atcacttccccgatagatagactcgtcaggaaaatatatacgattagaat
tagcacctagatttcaaaaatgatcaatttgatcccATTCTCCTccgttt
ttttccaaaaaaaagaggtcgatgtgaaaattcaatcctttagctacacc
ctcatataagtttcgtatataaattggacacaacaaaggccaaatataga
gccgactttataaatccgaaatagactatgatttttttcatccctGAAAT
ACTCCGGATTCAACAAGCGATATCATAAGTTCCATTAAAGCTATTAAGAT
CGGACAAAAAGTATCGGACAGAGCTActaatctattttcttatttttata
atgccgtacgtcaaatatcgaacttgctttcacccgccattactttcctt
actcgccatttccctcgccgctttaaccgtagccgtagagaattccagat
acataatctctttattgatttgatgcttataaagtaattgcttataagaa
aaataaatcataaagtatatgcttataagaaaaataaatgagctcatatt
gtgcgccgttccttgtttactttggaacAACTAATTGCCAAAAGGTATAT
TACTGTCTaaaaagagttattgatttgattcttataaagtaaatgcttat
aagaaaaataaatgagctcatattgtgcgccgttccttgtttactttgga
acaactaattaccgaaagctatatcaccgtctatcaagaggtattgattt
gattcttataaagtaaatgcttataagaaaaataaatatgctcatattgt
gcgccatcccttgtttactttgtaagatcTAATTACCGAACGGTATATCG
ctatctatcaagagttattgatttgattcttataaagtaaatgcttataa
gaaaagtaaatatgctcatattgtgcgccatcccttgtttactttgtaag
aactaattaccgaacgGTATATCACTATctatcaagagttattgatttga
ttcttataaagtatatgcttataagaaaaataaataaggtcatattgtgc
gccatcccttgtttactttttaagaactaattaccgaaaggtatatcccc
gtttatcaagagttattgatttgattcttataaagtatatgcttataaga
aaaataagtaagctcatattgtgtgccatcccctgtttactttgtaagaa
ctaattacggaaaggtatattaccgtctatcaagagttattgatttgatt
cttataaagtaaatgcttataagaaaaataaacgagctcatattgtgcgc
cgttccttgtttactttggaacaactaattaccgaaagctatatcaccgt
ctatcaagagttattgatttgattcttataaagtagatgcttataagaaa
aataaatatgctcatattgtgcgccatcccttgtttactttgtaagaact
aattaccgaacggtatatcaccgtctatcaagagttattgatttgattct
tataaagtatatgcttataagaaaaataagtaagctcatattgtgtgcca
tcccttgtttactttgtaagaactaattaccgaacggcatatcaccgtct
atcaagagttattgatttgattcttataaagtaaatgcttataagaaaaa
taaatgagctcatattgtgcgccgttccttgtttactttggaacaactaa
ttaccgaaagctatatccccgtctatcaagagttattgatttgattctta
taaagtaaatgcttataagaaaaataaatgagctcatattgtgcgccgtt
ccttgtttactttggaacaactaattaccgaaagctatatccccgtctat
caagagttattgatttgattcttataaagtaaatgcttataagaaaaata
aatgagctcatattgtgcgccgttccttgtttactttggaacaactaatt
accgaaagctatatccccgtctatcaagagttattgatttgattcttatg
aagtaaatcaaaactgtggagctaaagacacgaagatatatgacgtaatc
caaagaaaacgcgcgaaaatcgtccgtggttatacgagcgtgtaatttgt
aaattgaatctagtgagttcgtccaccgtatcaagcactttcgttttcta
attttttttccgaggacaccgcagaaaggctatcgtaatactttcgctaa
gcgaaattaaaaatgtttgaataCCACTCAATAAttgacatattatatac
caattaTTGCACGTTATTAATGACGTTATTCTGAAAAGCAATTATCATGA
AAGAAAAGGTTAAAATAATATTATCTATTGGTCATTATTATTAAGTATTT
ACCAATGCActaaaacttttaaacttttcttAGTCTCTGCACATTATAGG
AACAACACTGCACAGCACAATGtaaaatagtttattttaaccttttttta
gATTGATTGCACACTGCGAGTCTAATCAAAGAAATGATCCGTTAATTCAA
AAAATCCCACCATCCGACAACCCATTCCGTGACCATCGACCTTTCTGCTC
AGTCTTGTGAATTTTGTCGTGTTGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063877-exon-scaffold_404-1491911889:257547..257843 | TCONS_00063877-exon-scaffold_404-1491911889:257547..257843 | Clytia hemisphaerica | exon |
| TCONS_00063877-exon-scaffold_404-1510915933:257547..257843 | TCONS_00063877-exon-scaffold_404-1510915933:257547..257843 | Clytia hemisphaerica | exon |
| TCONS_00063877-exon-scaffold_404-1575043694:257547..257843 | TCONS_00063877-exon-scaffold_404-1575043694:257547..257843 | Clytia hemisphaerica | exon |
| TCONS_00063877-exon-scaffold_404-1491911889:266398..266523 | TCONS_00063877-exon-scaffold_404-1491911889:266398..266523 | Clytia hemisphaerica | exon |
| TCONS_00063877-exon-scaffold_404-1510915933:266398..266523 | TCONS_00063877-exon-scaffold_404-1510915933:266398..266523 | Clytia hemisphaerica | exon |
| TCONS_00063877-exon-scaffold_404-1575043694:266398..266523 | TCONS_00063877-exon-scaffold_404-1575043694:266398..266523 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_404 | supercontig | scaffold_404:257547..266523 + |
Blast
BLAST of TCONS_00063877 vs. Swiss-Prot (Human)
Match: GBG8 (Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-8 OS=Homo sapiens GN=GNG8 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.672e-18 Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = 2
Query: 212 QVDQMRKTNEQLKRELNIKRAKFSDSAKELIAHCESNQRNDPLIQKIPPSDNPFRDHRPFCSVL 403
++ + RKT EQLK E+NI R K S +A EL+A CE++ ++DPL+ +P ++NPFRD R FC +L
Sbjct: 7 KIAEARKTVEQLKLEVNIDRMKVSQAAAELLAFCETHAKDDPLVTPVPAAENPFRDKRLFCVLL 70
The following BLAST results are available for this feature:
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