TCONS_00000664 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000664
Unique NameTCONS_00000664
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000664 ID=TCONS_00000664|Name=TCONS_00000664|organism=Clytia hemisphaerica|type=transcript|length=510bp
TTTATTTAAACTGCCTCTAATCCCTTTAAACTTTAAAGGAAGAATCCAAG
AAGACCTTAAAATGATTAGTCAGTGTCCCGAGCACTTGGGCTTTTTACTC
ATTGTTTTCTTTCCAAAGTGACgtgattttttattattgaaatttgacaa
aattcaATCATGAAATAAATGGTTATTGTGAATTCTGGTAGCAAACAACA
GGTTAAACTAGTACTGATTTTTGTGACAATGTTGGATACAATATAGTGAA
TTCCTTTCAGCTTAGCAATTATTTTATATATGTGACAAACCAAGtagaac
aagctagatgctgaatggacctacctgatgatgaaacttagatagcaata
aggagaaaaataaaaacaatcattgattgttgatgggggggggaggggag
tggggaaaaagaaatagaaagttccggttgcaaaattgcaaaagttttat
tgacaattgaatcatgcttgatggtggcattgttatcaataattttttta
agtaaaaaaa
Run BLAST on NCBI

transcript from alignment at sc0000002:1421298..1421807

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000664 ID=TCONS_00000664|Name=TCONS_00000664|organism=Clytia hemisphaerica|type=transcript|length=510bp|location=Sequence derived from alignment at sc0000002:1421298..1421807 (Clytia hemisphaerica)
tttttttacttaaaaaaattattgataacaatgccaccatcaagcatgat
tcaattgtcaataaaacttttgcaattttgcaaccggaactttctatttc
tttttccccactcccctcccccccccatcaacaatcaatgattgttttta
tttttctccttattgctatctaagtttcatcatcaggtaggtccattcag
catctagcttgttctaCTTGGTTTGTCACATATATAAAATAATTGCTAAG
CTGAAAGGAATTCACTATATTGTATCCAACATTGTCACAAAAATCAGTAC
TAGTTTAACCTGTTGTTTGCTACCAGAATTCACAATAACCATTTATTTCA
TGATtgaattttgtcaaatttcaataataaaaaatcacGTCACTTTGGAA
AGAAAACAATGAGTAAAAAGCCCAAGTGCTCGGGACACTGACTAATCATT
TTAAGGTCTTCTTGGATTCTTCCTTTAAAGTTTAAAGGGATTAGAGGCAG
TTTAAATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000410XLOC_000410Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000664-exon-sc0000002-1491911889:1421298..1421807TCONS_00000664-exon-sc0000002-1491911889:1421298..1421807Clytia hemisphaericaexon
TCONS_00000664-exon-sc0000002-1510915933:1421298..1421807TCONS_00000664-exon-sc0000002-1510915933:1421298..1421807Clytia hemisphaericaexon
TCONS_00000664-exon-sc0000002-1575043694:1421298..1421807TCONS_00000664-exon-sc0000002-1575043694:1421298..1421807Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1421298..1421807 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.03618	1.74259	6.55351	7.33701	0.160029	0.125604	0.309901	0.288198	1.04891	2.40182	0.613853	0.655045	0.879347	0.872436	0.96618	1.39987	1.51192	1.90309	1.93723	1.78326	1.50898	2.66378	1.6625	0.998973	0	0	3.24305	2.13941	3.22474	3.15443
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000664 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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