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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006306 ID=TCONS_00006306|Name=TCONS_00006306|organism=Clytia hemisphaerica|type=transcript|length=1441bp
GGAATTCATAGATAGTAACTGCATACTGTGTGTACTGCATACTGTTATCA
ATAAAATACTTTAATCTTATCTTATTAACCATATGTATTAATACGTCTCA
TATATTAATGAGAGAACATGCATGTATAGTTTTGTATCGCTTCTCAAAAA
ATAATATACAGAGTTAGAAAGAAGAGAAACTTATGAGATTGTTAAACAGT
AGTTCATATGCGTGTGTTTGGTTTCACGAAATAAGAATGATGCGTCACCc
aaaagattttattgttgTTGCAATATTTTTGATGTTAGGATTTTACTTTC
TTTACAATAATGGACACCATGACAAAAGGGAGTACAAGTTTAAAGATCTA
AAAGATCAAGGTATCATCGATGAACGAGCAGCCGACAAGAACTCTACCCT
CCACGATTCACTTGTCTTTCCTTCACATGTAAAATATTTCACATCGAAAC
TAGAATATGCCTATTCGAAAAGTGGAACGGATTTACAGTCTTTACAAAAA
AAAGTCGAAGACAGACGATCAAAACTAAAACGTAGTCCGAAATATGGTGA
AGATCAATCTTGTGCAATCGGTGACAGAATCCCAGGACTGATTAAACTAT
TTGATGCGTGGGCACACATGGCGGATTTATTCAACGTTCGATATTTACTG
ATATATGGATCTCTAGTTGGAGCGGAACGTGACCGTAACATCGTGCCGTA
CGATTTAGACGTCGATGTAATGATGCCGGAAGATGACGTGCCAAAACTCT
TGAAAATGGTCGATCGTCATTTCACAGTCGACGATAACAAAATTCATCTC
ACCATTCATCCAGAGTATAAAACATACTGGCGAAAGCGAACAAAAATCTG
TTGCAATGGAGAAATCAGTCGTGGCCCAGGATCGTGGACATGTTGGGACC
AATGCGCCGTACCTAATCCACTCGGGCGTCTTATTCTCGGACATAAGTTA
CACGTAGGAATTATAGGTTATAAAATGATTGAAAGTGGTAGCGTTTTAAA
AATGACATGCCATGAGGAATATGGTTTTAGTACTGAGTACAAATGGGTAG
ATATGATACCCAAAGATTGTGAATTTTTGGGCCATAAGACATACTGTCCG
ACAAACCCTGATCCAATGAGTCAAGCAATTTATGGAAAAGATTGGAGAGA
CCCAGacagaaaatgtaaaaatggaAAATGGACTAAAATAAGTAACGTAC
CAAGTAAATATTATTAATTTTAATTACTATCTAGATCATTGGAACTTATT
CTGAAGAAACAACATAAATCTGCTATGAGtcgctttttctttcatttcaa
gTCCCCGCAATGCGTATTGGGTAATCAGGACGGTCCGCAAATCAAggttt
ctgattggttcaaaattttgatgattctgaATCATCTTAAGTTTGAttta
ttattcattttatttttcaaaagacattgaaaaTATCTGAA Run BLAST on NCBI protein sequence of TCONS_00006306-protein >TCONS_00006306-protein ID=TCONS_00006306-protein|Name=TCONS_00006306-protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp
MRLLNSSSYACVWFHEIRMMRHPKDFIVVAIFLMLGFYFLYNNGHHDKRE
YKFKDLKDQGIIDERAADKNSTLHDSLVFPSHVKYFTSKLEYAYSKSGTD
LQSLQKKVEDRRSKLKRSPKYGEDQSCAIGDRIPGLIKLFDAWAHMADLF
NVRYLLIYGSLVGAERDRNIVPYDLDVDVMMPEDDVPKLLKMVDRHFTVD
DNKIHLTIHPEYKTYWRKRTKICCNGEISRGPGSWTCWDQCAVPNPLGRL
ILGHKLHVGIIGYKMIESGSVLKMTCHEEYGFSTEYKWVDMIPKDCEFLG
HKTYCPTNPDPMSQAIYGKDWRDPDRKCKNGKWTKISNVPSKYY Run BLAST on NCBI transcript from alignment at sc0000066:433878..436806- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006306 ID=TCONS_00006306|Name=TCONS_00006306|organism=Clytia hemisphaerica|type=transcript|length=2929bp|location=Sequence derived from alignment at sc0000066:433878..436806- (Clytia hemisphaerica)
GGAATTCATAGATAGTAACTGCATACTGTGTGTACTGCATACTGTTATCA
ATAAAATACTTTAATCTTATCTTATTAACCATATGTATTAATACGTCTCA
TATATTAATGAGAGAACATGCATGTATAGTTTTGTATCGCTTCTCAAAAA
ATAATATACAGAGTTAGAAAGAAGAGAAACTTATGAGATTGTTAAACAGT
AGTTCATATGCGTGTGTTTGGTTTCACGAAATAAGAATGATGCGTCACCC
AAAAGATTTTATTGTTGTTGCAATATTTTTGATGTTAGGATTTTACTTTC
TTTACAATAATGGACACCATGACAAAAGGGAGTACAAGTTTAAAGATCTA
AAAGATCAAGGTACGAATCCTGTGGATTTGAAGTGTTGGGGGACCGGGGA
GGGCACTCAAGGAAGGTTAACGACCTACAGTACGTGCGGCTCTTATAAGG
TCATTTTTCCAAAATTCTAAAAGTGCACTATAAGGGTCGAAGTGAGCAAA
GATGAGAAAAAGTGAACTGTAGAGGTGTAAAATTTGGAAAATCTGACCAT
ATTTTGCCTTAAAATGGTCAAAATCTTTTTTTAAGAAAATACACCGTAAG
GGTCCTATTTCAGTTGTTTTTGAATCGAGTGTCCCCGAAATTTGCACCGA
ATTTCTGAGGTGGCGGATTGAATCTAGCACTTATTTCCTTTTACCATTTT
ACATTTTTCAAATTATTTTGAAAATTTTTTTTCTCTTTACGATAAAGGTA
TCATCGATGAACGAGCAGCCGACAAGAACTCTACCCTCCACGATTCACTT
GTCTTTCCTTCACATGTAAAATATTTCACATCGAAACTAGAATATGCCTA
TTCGAAAAGTGGAACGGATTTACAGTCTTTACAAAAAAAAGTCGAAGACA
GACGATCAAAACTAAAACGTAGTCCGAAATATGGTGAAGATCAATCTTGT
GCAATCGGTGACAGAATCCCAGGACTGATTAAACTATTTGATGCGTGGGC
ACACATGGCGGATTTATTCAACGTTCGATATTTACTGATATATGGATCTC
TAGTTGGAGCGGAACGTGACCGTAAGTTGTGATTTTGTAGGTACAGTTAG
TTGTCACTCTCTAATTCGACCTTCTACTCTTTGATACACTCCATCAACAA
GAAACTCTCCTAAACTATGCTCTATTATTTGATTTGCTCCCTTATTCGAT
GAAAATGCGATTCCCCTTGAAAATCGAATTAGAGAGCGTCAACTATATCA
ATATTCGATAAAGTCTTAAGGAGTGGTGGAGGATGTTTTCGTCCGTCACA
GAAATATTAAATTTATTTAATTTATTTATTTATTTATTTATTCTTTCTTT
AACCCTTTAACGTTGGTGTAAAAAATATAGTACAAAACTAATTAAAACCA
ACTTGACAATCGAATATTCCCTAGCTAGAGAATAATATTAAAATTGATAA
AATCATTAAAATATTGAACAAAGTTTGCAAGAACAATAGATTTTTGTTTT
GCATATTTTATTTTTGAAACTCTCCACTGAGTCCAAATTTTTAAGTTCTG
CGGGCAATCTATTCCATGCTTGCCCTGCTCGAAAATTAAAAAAGTTCAAG
CAAACTGAGTTCTTTGGTTGTGAAAGTTTAATTTGAGCGCCTCTCCTAAG
TTTAGGACCTTTCCGAGAATTTTCGTTCTGGTCCTCGTCCTCATTTAAAC
GCGGAGAAATTAGGATGAGCAAAGTTTACAGCCGGTAATAAGAGTCGATT
TTCCAAGATCCACCAACTCTACCGACTGTAAACTAGCTTTGAAATCAAAA
CATATTATTGACACTGAAGTCTAGAGGAGGAGGTACTTTCAGAATTGGGA
CATAAAGTTCACCAAACGTTATAAAGAACGTTAATTATTTGACATTCTGG
TTATTATTTTCAGGCAGATTTTCAAACTTGAAAATAGACCCGTTAAGGCC
ATCTTCCTACCTTGTTGACATAAAAGGCTAGTATATCAATTTCTGCAATA
AGTGTAGACATACTAAATGCTAAACTCGTAAGCAGCCCATAGCAACATTC
TTTTTTACATTCTAAAAGCGCTCTCCAAAATACATCCATCAACAAGGGCA
TGAAATTGTAAAAAAATGACACTGTATAAAACGATTCCCTTGACTGTTAA
CGGTGTAAATATCTTTTTCTAGGTAACATCGTGCCGTACGATTTAGACGT
CGATGTAATGATGCCGGAAGATGACGTGCCAAAACTCTTGAAAATGGTCG
ATCGTCATTTCACAGTCGACGATAACAAAATTCATCTCACCATTCATCCA
GAGTATAAAACATACTGGCGAAAGCGAACAAAAATCTGTTGCAATGGAGA
AATCAGTCGTGGCCCAGGATCGTGGACATGTTGGGACCAATGCGCCGTAC
CTAATCCACTCGGGCGTCTTATTCTCGGACATAAGTTACACGTAGGAATT
ATAGGTTATAAAATGATTGAAAGTGGTAGCGTTTTAAAAATGACATGCCA
TGAGGAATATGGTTTTAGTACTGAGTACAAATGGGTAGATATGATACCCA
AAGATTGTGAATTTTTGGGCCATAAGACATACTGTCCGACAAACCCTGAT
CCAATGAGTCAAGCAATTTATGGAAAAGATTGGAGAGACCCAGACAGAAA
ATGTAAAAATGGAAAATGGACTAAAATAAGTAACGTACCAAGTAAATATT
ATTAATTTTAATTACTATCTAGATCATTGGAACTTATTCTGAAGAAACAA
CATAAATCTGCTATGAGTCGCTTTTTCTTTCATTTCAAGTCCCCGCAATG
CGTATTGGGTAATCAGGACGGTCCGCAAATCAAGGTTTCTGATTGGTTCA
AAATTTTGATGATTCTGAATCATCTTAAGTTTGATTTATTATTCATTTTA
TTTTTCAAAAGACATTGAAAATATCTGAA Coding sequence (CDS) from alignment at sc0000066:433878..436806- >TCONS_00006306 ID=TCONS_00006306|Name=TCONS_00006306|organism=Clytia hemisphaerica|type=CDS|length=3105bp|location=Sequence derived from alignment at sc0000066:433878..436806- (Clytia hemisphaerica)
GTAACATCGTGCCGTACGATTTAGACGTCGATGTAATGATGCCGGAAGAT
GACGTGCCAAAACTCTTGAAAATGGTCGATCGTCATTTCACAGTCGACGA
TAACAAAATTCATCTCACCATTCATCCAGAGTATAAAACATACTGGCGAA
AGCGAACAAAAATCTGTTGCAATGGAGAAATCAGTCGTGGCCCAGGATCG
TGGACATGTTGGGACCAATGCGCCGTACCTAATCCACTCGGGCGTCTTAT
TCTCGGACATAAGTTACACGTAGGAATTATAGGTTATAAAATGATTGAAA
GTGGTAGCGTTTTAAAAATGACATGCCATGAGGAATATGGTTTTAGTACT
GAGTACAAATGGGTAGATATGATACCCAAAGATTGTGAATTTTTGGGCCA
TAAGACATACTGTCCGACAAACCCTGATCCAATGAGTCAAGCAATTTATG
GAAAAGATTGGAGAGACCCAGACAGAAAATGTAAAAATGGAAAATGGACT
AAAATAAGTAACGTACCAAGTAAATATTATTAAGTATCATCGATGAACGA
GCAGCCGACAAGAACTCTACCCTCCACGATTCACTTGTCTTTCCTTCACA
TGTAAAATATTTCACATCGAAACTAGAATATGCCTATTCGAAAAGTGGAA
CGGATTTACAGTCTTTACAAAAAAAAGTCGAAGACAGACGATCAAAACTA
AAACGTAGTCCGAAATATGGTGAAGATCAATCTTGTGCAATCGGTGACAG
AATCCCAGGACTGATTAAACTATTTGATGCGTGGGCACACATGGCGGATT
TATTCAACGTTCGATATTTACTGATATATGGATCTCTAGTTGGAGCGGAA
CGTGACCATGAGATTGTTAAACAGTAGTTCATATGCGTGTGTTTGGTTTC
ACGAAATAAGAATGATGCGTCACCCAAAAGATTTTATTGTTGTTGCAATA
TTTTTGATGTTAGGATTTTACTTTCTTTACAATAATGGACACCATGACAA
AAGGGAGTACAAGTTTAAAGATCTAAAAGATCAAGGTAACATCGTGCCGT
ACGATTTAGACGTCGATGTAATGATGCCGGAAGATGACGTGCCAAAACTC
TTGAAAATGGTCGATCGTCATTTCACAGTCGACGATAACAAAATTCATCT
CACCATTCATCCAGAGTATAAAACATACTGGCGAAAGCGAACAAAAATCT
GTTGCAATGGAGAAATCAGTCGTGGCCCAGGATCGTGGACATGTTGGGAC
CAATGCGCCGTACCTAATCCACTCGGGCGTCTTATTCTCGGACATAAGTT
ACACGTAGGAATTATAGGTTATAAAATGATTGAAAGTGGTAGCGTTTTAA
AAATGACATGCCATGAGGAATATGGTTTTAGTACTGAGTACAAATGGGTA
GATATGATACCCAAAGATTGTGAATTTTTGGGCCATAAGACATACTGTCC
GACAAACCCTGATCCAATGAGTCAAGCAATTTATGGAAAAGATTGGAGAG
ACCCAGACAGAAAATGTAAAAATGGAAAATGGACTAAAATAAGTAACGTA
CCAAGTAAATATTATTAAGTATCATCGATGAACGAGCAGCCGACAAGAAC
TCTACCCTCCACGATTCACTTGTCTTTCCTTCACATGTAAAATATTTCAC
ATCGAAACTAGAATATGCCTATTCGAAAAGTGGAACGGATTTACAGTCTT
TACAAAAAAAAGTCGAAGACAGACGATCAAAACTAAAACGTAGTCCGAAA
TATGGTGAAGATCAATCTTGTGCAATCGGTGACAGAATCCCAGGACTGAT
TAAACTATTTGATGCGTGGGCACACATGGCGGATTTATTCAACGTTCGAT
ATTTACTGATATATGGATCTCTAGTTGGAGCGGAACGTGACCATGAGATT
GTTAAACAGTAGTTCATATGCGTGTGTTTGGTTTCACGAAATAAGAATGA
TGCGTCACCCAAAAGATTTTATTGTTGTTGCAATATTTTTGATGTTAGGA
TTTTACTTTCTTTACAATAATGGACACCATGACAAAAGGGAGTACAAGTT
TAAAGATCTAAAAGATCAAGGTAACATCGTGCCGTACGATTTAGACGTCG
ATGTAATGATGCCGGAAGATGACGTGCCAAAACTCTTGAAAATGGTCGAT
CGTCATTTCACAGTCGACGATAACAAAATTCATCTCACCATTCATCCAGA
GTATAAAACATACTGGCGAAAGCGAACAAAAATCTGTTGCAATGGAGAAA
TCAGTCGTGGCCCAGGATCGTGGACATGTTGGGACCAATGCGCCGTACCT
AATCCACTCGGGCGTCTTATTCTCGGACATAAGTTACACGTAGGAATTAT
AGGTTATAAAATGATTGAAAGTGGTAGCGTTTTAAAAATGACATGCCATG
AGGAATATGGTTTTAGTACTGAGTACAAATGGGTAGATATGATACCCAAA
GATTGTGAATTTTTGGGCCATAAGACATACTGTCCGACAAACCCTGATCC
AATGAGTCAAGCAATTTATGGAAAAGATTGGAGAGACCCAGACAGAAAAT
GTAAAAATGGAAAATGGACTAAAATAAGTAACGTACCAAGTAAATATTAT
TAAGTATCATCGATGAACGAGCAGCCGACAAGAACTCTACCCTCCACGAT
TCACTTGTCTTTCCTTCACATGTAAAATATTTCACATCGAAACTAGAATA
TGCCTATTCGAAAAGTGGAACGGATTTACAGTCTTTACAAAAAAAAGTCG
AAGACAGACGATCAAAACTAAAACGTAGTCCGAAATATGGTGAAGATCAA
TCTTGTGCAATCGGTGACAGAATCCCAGGACTGATTAAACTATTTGATGC
GTGGGCACACATGGCGGATTTATTCAACGTTCGATATTTACTGATATATG
GATCTCTAGTTGGAGCGGAACGTGACCATGAGATTGTTAAACAGTAGTTC
ATATGCGTGTGTTTGGTTTCACGAAATAAGAATGATGCGTCACCCAAAAG
ATTTTATTGTTGTTGCAATATTTTTGATGTTAGGATTTTACTTTCTTTAC
AATAATGGACACCATGACAAAAGGGAGTACAAGTTTAAAGATCTAAAAGA
TCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006306-exon-sc0000066-1575043694:436447..436806 | TCONS_00006306-exon-sc0000066-1575043694:436447..436806 | Clytia hemisphaerica | exon |
| TCONS_00006306-exon-sc0000066-1575043694:435736..436059 | TCONS_00006306-exon-sc0000066-1575043694:435736..436059 | Clytia hemisphaerica | exon |
| TCONS_00006306-exon-sc0000066-1575043694:433878..434634 | TCONS_00006306-exon-sc0000066-1575043694:433878..434634 | Clytia hemisphaerica | exon |
| TCONS_00006306-exon-sc0000066-1510915933:436447..436806 | TCONS_00006306-exon-sc0000066-1510915933:436447..436806 | Clytia hemisphaerica | exon |
| TCONS_00006306-exon-sc0000066-1510915933:435736..436059 | TCONS_00006306-exon-sc0000066-1510915933:435736..436059 | Clytia hemisphaerica | exon |
| TCONS_00006306-exon-sc0000066-1510915933:433878..434634 | TCONS_00006306-exon-sc0000066-1510915933:433878..434634 | Clytia hemisphaerica | exon |
| TCONS_00006306-exon-sc0000066-1491911889:436447..436806 | TCONS_00006306-exon-sc0000066-1491911889:436447..436806 | Clytia hemisphaerica | exon |
| TCONS_00006306-exon-sc0000066-1491911889:435736..436059 | TCONS_00006306-exon-sc0000066-1491911889:435736..436059 | Clytia hemisphaerica | exon |
| TCONS_00006306-exon-sc0000066-1491911889:433878..434634 | TCONS_00006306-exon-sc0000066-1491911889:433878..434634 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000066 | supercontig | sc0000066:433878..436806 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR007074 | LicD_fam |
Blast
The following BLAST results are available for this feature:
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