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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006305 ID=TCONS_00006305|Name=TCONS_00006305|organism=Clytia hemisphaerica|type=transcript|length=877bp
AAATGTTACTAATAACAAGTACACGAAAGAAACATTATTGCTTTTAGGGG
AAAATAAATAATCCTTCAAGGGAGTCGTAAGCAGAAATAAAAGTATCATA
ACCTTTGAGTAGTGATAAGAAAAGTCGGAGGAAAATGAAACTAGCGTGGG
TTTGGTTCACACTGGCCATTGTGGTTGAAATAAGCCGAGCACAGAAATGC
AAGGCGCGAAAACCAAAAAATCGACACGGTGTGGAACCAATACTTTTGAT
TGACAAAGAAACGCAACTGAAATTTGACAATTACTTGACAACAATACCTG
TCCTTGGAACAGAATGGAAAGTATCCTTCTACCTCAAATATTACCAAAAC
AATCCTAATAACCAAGGAACGTCTACGTTTTTCATGGAAGATTCTACGGG
AAATAAACGTCCAACAATCAACGGCCACGCAGGGAATTCTCGAATTCACG
TCTATCATTTTGTGGACGGCTCAGAGAAGGCCTTTACGTATCCCCTAACC
TTGAATGTCTATCATTTTATCGAGATGGAACAACGGTATATATCTGGCGG
AAACTACGAGTTTCGCTTTTCAGTTGACGGCGTCGTGATCCAAACGTCCC
TCCTTACGCAAGACATCCATCTACGTTATGACGTGAAGCTTTACGCCGCT
AATAAAAATATACCGACAAGTCCTGCTTATATAAAACAACTGGAGTTTgt
taacattttttgaatttctttcttttttttacatttttcagcttcatttt
aaaacacttttgcatttttttcaactttttgattAACTTATCAACAGTAT
AttctaccagtggataccccttaagaCCTACAAAAACTAAAGGTACCCTC
TATCTGAAAATGTTGGTGGAATTTGAG Run BLAST on NCBI protein sequence of TCONS_00006305-protein >TCONS_00006305-protein ID=TCONS_00006305-protein|Name=TCONS_00006305-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
MKLAWVWFTLAIVVEISRAQKCKARKPKNRHGVEPILLIDKETQLKFDNY
LTTIPVLGTEWKVSFYLKYYQNNPNNQGTSTFFMEDSTGNKRPTINGHAG
NSRIHVYHFVDGSEKAFTYPLTLNVYHFIEMEQRYISGGNYEFRFSVDGV
VIQTSLLTQDIHLRYDVKLYAANKNIPTSPAYIKQLEFVNIF Run BLAST on NCBI transcript from alignment at sc0000066:428902..433788- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006305 ID=TCONS_00006305|Name=TCONS_00006305|organism=Clytia hemisphaerica|type=transcript|length=4887bp|location=Sequence derived from alignment at sc0000066:428902..433788- (Clytia hemisphaerica)
AAATGTTACTAATAACAAGTACACGAAAGAAACATTATTGCTTTTAGGGG
AAAATAAATAATCCTTCAAGGGAGTCGTAAGCAGAAATAAAAGTATCATA
ACCTTTGAGTAGTGATAAGAAAAGTCGGAGGAAAATGAAACTAGCGTGGG
TTTGGTTCACACTGGCCATTGTGGTTGAAATAAGCCGAGCACAGAAATGC
AAGGTAGGTTATAAACCCATCGTATCTTAATCGAAAATGGTCATTAGTTA
ACACTTTTTACATGGAAGACTATGTAGCCAATCAAATAGCTCTACTGGTG
TCAAACTCAAAAAAATTCCACCTCTTATGAGGCCCCCCAGCGGCACCCCT
AATCACGCCATCACGCAAAAAAAAATTCTCCATCACGCATCACGAAAATC
GCTAAAATTTGTCATTACACAAAAAATAGCGAAAAATAGCCCAAATCACG
CATCACGCCAAAATCTTGATCACGCCATCACGCCAAAAAAAATCTCTAAT
CACGCCATCACGCAAGAAAAAAATCCCAATCACGCCATCACGCAAACCGC
TGGGGGGGCCTCTCTTACAGCCTTTCTCTACCTTTGAATAAATAAAACAA
TTCCAGGCATCGTGTTCGAATGGCATTGTTTCCAAGACATTGAAACGTCA
TTAGTTAGAGACATAATCAAGAGTAGGCCAAAATTGAGCCTAATTTAGAG
GGCTTCGATTTTTTTGCCCAGTAGAAAAAGTGGCCATTTTTTTCTTTTTC
ATATATCATTTTTGAATTTTAGCTTTAAAATCATCAACTCAAAACTATGA
TTATATTCAGCATGACTATACTTTCAAAAAGATTTTGAAAAGACTTTGGA
TTTAATCTTTTTTCCCTCGGAATAATACACTTTTTTTTTATAAGAACATC
CTAAATTTTTTAAGTCTTGGGATTTTCTTAACTTTTTGAATTGTAAGCCT
AGAGAAATGTTCTTAACATGTTCTTATTTTCGCCATTTTATGAGTGTTTT
GTCCAATTTCCTATGAAATTCTGTGTTCTAGAGTCCGCAAAGCTTTAAAA
TGTTCTTAACACTTTGGCCATCGAAGCCTTATGTTCTTATAAAGTTCGTT
TCTAACGGTTTCCTCATATGTCATAGTCTCCTTCTTCGAATGTGTAAATG
TCGCCAGTATTGTAATCAACACCGGCCCCTTTTTACGCCCACCCGCAATC
GATCGCTGCCGTATTTTGAGTTTACGCCTACTAGGCACGTGAAAAACACT
AAAATCAATATAATTCGCCAAATTTGCTTCAAAACTTTTCTTCTATTCTG
TCTTGGACAAAATCAATGTCGCTGAAAATCGATGCTTTTCGTTAATTTTT
TGGATATGGAGTGAAAAAATGAACACTATTCCTATTCGAGTATAATCTAA
TTCTATTATACTTACGTTAAAAGCAATATTACTTTTTCACAATATTGTCA
TGAATGTCTGTGCCAAGTTTCATGTTTTTTCATCAAATGCAAAATAGTTA
TGCTTAGCCACTAGAAAAATTTAGACTCTTTTTAAACCAACCCTTTTATT
AACGCAAACCCTTCATTCGTCTTCAGTTTTCTATTCTTTCACTCGTTCAC
CAGTCGATAGCACAAATATCTAAAACAAACATACTCCCGGGATGAGCTGG
AGTTTTTACAAGATACTTCACTAATTGGTCATTTAAAGTGATAGAGATGA
CGCGTTCTTTAGAAAAAGTGATGAGATTCTTTTATTACATCTTAACGACC
AACCAAATCAAATAAGAGCTTGTAAAAACTCCAGCTTGTCCCAAACATAC
AGTGGATGAGCCAATTGGAGCCCACAAACTGCGCATGCGTCCAATCTCTC
TCCTCCAACCTTCGCGCCATGCAGGTTATCTGTTTTGATTTGATTTGATT
TTACGAAATTGCCGGTACCGAATTGTGATCTACTACTGTGGTCTACTCAG
CAAAGATAACGCGTTGTTTTGCTCCGATTGCCGTGGCTTGAGAAAAAAAG
TAGCTCTATCTAGTGTTTTAGATAAAATATCTGTGTTCAATGATCTTATA
AAGTAGCTAGCTTTGAACGAGATAATTCCTATACTTTACAGGCGCGAAAA
CCAAAAAATCGACACGGTGTGGAACCAATACTTTTGATTGACAAAGGTAA
CTATGGTAACATTTGAATTTTATCACGCTTATGCACGAGCATAAAAGTGG
TAAATGGAACTTTTCTTCAAAATTTATACTTTCAAGATTGAGTTTTAACT
CAAACTTTATCCAAACTACTTAAATGGGATAAATCTTTGCGAGGATTAAA
TTTTGCGGATGGGGCTTTCTTGATTTTTCGCGTTCATTTAACTTCGCTGA
TCGGGGTAAAAATAGGAATTTATGAAAAGGGCCAAAACTTTAAATTAAAT
TTTTTTTCCAGAAAACTGAACAAAACTTTCTTTCATTTCGACGATTTTGG
AATAGTGCGAGGGAGATACGTATATTAGAATATCATATAAGTTGAATACA
AATTTGGACAGAGCTTGATTTTTACAGGGTTTTTACAGCTAATAAGCGTG
TTGAGGATTTCACCTAAATCCACGAAATGCGCGCAAAATTCAATCCCTGT
GAAAGTTTTTCCTATTAAAGTAAGTTTTTATTTCACATGACTAGGGGTAA
GTTTTTCTTATGGGTTGTTATTTTTTATTTCACATGACTAGTAGTAGGGG
GCCAAGCCTTGGGTTCCGTGACATCTTTTCTACGACCTAGCCATTTTTGT
CTATTCAAAAGAACAGTATATTACAAGGGTTCTAGGAAAATTGCCCCCGA
GAAAATTGCCCCCCGGAAAACTGCCCCCGGAAAATTGCCCCCCGGAAAAT
TGCCCCCTAGGAAAACTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGGCGCTTAGGGTTAAGAAATGGGGAAAGATTTTTTTGAAAGTGA
TTTTATTACTCGACTATCTTTCTCCACCTCATACAAAACTTGTAAAAGTC
GTTTTTGAGATGTCTTTTATCTTTAAGAAAAAACTAAAAACTAAAACATG
CAAAGCAGATCAATGGTCAGCGTGAGGAATATAGTAAGAATGAAGTTATC
CATTCCATATGACCAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG
CGAAAGAAATACAGTATAAAACACATTGAAATTGACTATCGCTAAACAGA
GAAAACGCTTTCTCTGTATTCCATGGTTAAACCACATTATTCCTTATAAA
AAACGTCAACTTAATGAAAATTACGGCTGCAACCTGCAAAATATAGCCCC
AAAATATTCTAGATCTCTTAATCCGTTAAGACGCGATCACGTAAAATTGC
GTAATCCAAAATCTCCAGAATGTTGAAAATTGAGTTAGATTTAGTTTCGA
AAAATGGAAAAATAGGGGGCAATTTTCCGGGGGGCAATTTTCTTAGGGGG
CAATTTTCTGGGGGCAATTTTCTGGGGGGCAATTTTCTGGGGGGCAATTT
TCCTAGGGGGCAATTTTCCGGGGGGCCGTTTTCCGGGGGGCAATTTTNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGGGCAATTTTCTGGG
GGGCAATTTTCTGGGGGGCAATTTTCCTAGGGGGCAATTTTCCGGGGGGC
CGTTTTCCGAGGGGCAATTTTCCGGGGGGCAGTTTTCCGGGGGGCAGTTT
TCTCGGGGGCAATTTTCCTGACACCATTACAAGAGAGGGAGGACGTGGAT
TAGGCTCGGGAAAACTTTTTATGACCAAAATAGTGACGCCATAGGCAAAA
CTGCAAGGGAAATAAGTGTTAGAGAAATAGCTGATTTTCAAAAGTCAAAA
TAAACGAAAATGATTGATATCATCTGAAAGAGCATGAAATTCTGAGCAGA
AAAATGTATTACAACAACTCTCTGACTAAAAGACACAAAGGAATACAGCC
GATTTAAGACCAACTAAAGTCTATTCACGATAAGTGTGCACTCTTTTTTC
ATTAATAATATACTGTTCTTTTGAATAGACTAAAATGGCTAGGGCGTAGA
AAAGAAAATGTCACGGCACCCAAGGTTTGGCCCCCTACTATAGGGGTAAG
TTTTTCTTTTCATTTAAGAAACGCAACTGAAATTTGACAATTACTTGACA
ACAATACCTGTCCTTGGAACAGAATGGAAAGTATCCTTCTACCTCAAATA
TTACCAAAACAATCCTAATAACCAAGGAACGTCTACGTTTTTCATGGAAG
ATTCTACGGGAAATAAACGTCCAACAATCAACGGCCACGCAGGGAATTCT
CGAATTCACGTCTATCATTTTGTGGACGGCTCAGAGAAGGCCTTTACGTA
TCCCCTAACCTTGAATGTCTATCATTTTATCGAGATGGAACAACGGTATA
TATCTGGCGGAAACTACGAGTTTCGCTTTTCAGTTGACGGCGTCGTGATC
CAAACGTCCCTCCTTACGCAAGACATCCATCTACGTTATGACGTGAAGCT
TTACGCCGCTAATAAAAATATACCGACAAGTCCTGCTTATATAAAACAAC
TGGAGTTTGTTAACATTTTTTGAATTTCTTTCTTTTTTTTACATTTTTCA
GCTTCATTTTAAAACACTTTTGCATTTTTTTCAACTTTTTGATTAACTTA
TCAACAGTATATTCTACCAGTGGATACCCCTTAAGACCTACAAAAACTAA
AGGTACCCTCTATCTGAAAATGTTGGTGGAATTTGAG Coding sequence (CDS) from alignment at sc0000066:428902..433788- >TCONS_00006305 ID=TCONS_00006305|Name=TCONS_00006305|organism=Clytia hemisphaerica|type=CDS|length=1737bp|location=Sequence derived from alignment at sc0000066:428902..433788- (Clytia hemisphaerica)
AAACGCAACTGAAATTTGACAATTACTTGACAACAATACCTGTCCTTGGA
ACAGAATGGAAAGTATCCTTCTACCTCAAATATTACCAAAACAATCCTAA
TAACCAAGGAACGTCTACGTTTTTCATGGAAGATTCTACGGGAAATAAAC
GTCCAACAATCAACGGCCACGCAGGGAATTCTCGAATTCACGTCTATCAT
TTTGTGGACGGCTCAGAGAAGGCCTTTACGTATCCCCTAACCTTGAATGT
CTATCATTTTATCGAGATGGAACAACGGTATATATCTGGCGGAAACTACG
AGTTTCGCTTTTCAGTTGACGGCGTCGTGATCCAAACGTCCCTCCTTACG
CAAGACATCCATCTACGTTATGACGTGAAGCTTTACGCCGCTAATAAAAA
TATACCGACAAGTCCTGCTTATATAAAACAACTGGAGTTTGTTAACATTT
TTTGAGCGCGAAAACCAAAAAATCGACACGGTGTGGAACCAATACTTTTG
ATTGACAAAGATGAAACTAGCGTGGGTTTGGTTCACACTGGCCATTGTGG
TTGAAATAAGCCGAGCACAGAAATGCAAGAAACGCAACTGAAATTTGACA
ATTACTTGACAACAATACCTGTCCTTGGAACAGAATGGAAAGTATCCTTC
TACCTCAAATATTACCAAAACAATCCTAATAACCAAGGAACGTCTACGTT
TTTCATGGAAGATTCTACGGGAAATAAACGTCCAACAATCAACGGCCACG
CAGGGAATTCTCGAATTCACGTCTATCATTTTGTGGACGGCTCAGAGAAG
GCCTTTACGTATCCCCTAACCTTGAATGTCTATCATTTTATCGAGATGGA
ACAACGGTATATATCTGGCGGAAACTACGAGTTTCGCTTTTCAGTTGACG
GCGTCGTGATCCAAACGTCCCTCCTTACGCAAGACATCCATCTACGTTAT
GACGTGAAGCTTTACGCCGCTAATAAAAATATACCGACAAGTCCTGCTTA
TATAAAACAACTGGAGTTTGTTAACATTTTTTGAGCGCGAAAACCAAAAA
ATCGACACGGTGTGGAACCAATACTTTTGATTGACAAAGATGAAACTAGC
GTGGGTTTGGTTCACACTGGCCATTGTGGTTGAAATAAGCCGAGCACAGA
AATGCAAGAAACGCAACTGAAATTTGACAATTACTTGACAACAATACCTG
TCCTTGGAACAGAATGGAAAGTATCCTTCTACCTCAAATATTACCAAAAC
AATCCTAATAACCAAGGAACGTCTACGTTTTTCATGGAAGATTCTACGGG
AAATAAACGTCCAACAATCAACGGCCACGCAGGGAATTCTCGAATTCACG
TCTATCATTTTGTGGACGGCTCAGAGAAGGCCTTTACGTATCCCCTAACC
TTGAATGTCTATCATTTTATCGAGATGGAACAACGGTATATATCTGGCGG
AAACTACGAGTTTCGCTTTTCAGTTGACGGCGTCGTGATCCAAACGTCCC
TCCTTACGCAAGACATCCATCTACGTTATGACGTGAAGCTTTACGCCGCT
AATAAAAATATACCGACAAGTCCTGCTTATATAAAACAACTGGAGTTTGT
TAACATTTTTTGAGCGCGAAAACCAAAAAATCGACACGGTGTGGAACCAA
TACTTTTGATTGACAAAGATGAAACTAGCGTGGGTTTGGTTCACACTGGC
CATTGTGGTTGAAATAAGCCGAGCACAGAAATGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006305-exon-sc0000066-1575043694:433586..433788 | TCONS_00006305-exon-sc0000066-1575043694:433586..433788 | Clytia hemisphaerica | exon |
| TCONS_00006305-exon-sc0000066-1575043694:431643..431697 | TCONS_00006305-exon-sc0000066-1575043694:431643..431697 | Clytia hemisphaerica | exon |
| TCONS_00006305-exon-sc0000066-1575043694:428902..429520 | TCONS_00006305-exon-sc0000066-1575043694:428902..429520 | Clytia hemisphaerica | exon |
| TCONS_00006305-exon-sc0000066-1510915933:433586..433788 | TCONS_00006305-exon-sc0000066-1510915933:433586..433788 | Clytia hemisphaerica | exon |
| TCONS_00006305-exon-sc0000066-1510915933:431643..431697 | TCONS_00006305-exon-sc0000066-1510915933:431643..431697 | Clytia hemisphaerica | exon |
| TCONS_00006305-exon-sc0000066-1510915933:428902..429520 | TCONS_00006305-exon-sc0000066-1510915933:428902..429520 | Clytia hemisphaerica | exon |
| TCONS_00006305-exon-sc0000066-1491911889:433586..433788 | TCONS_00006305-exon-sc0000066-1491911889:433586..433788 | Clytia hemisphaerica | exon |
| TCONS_00006305-exon-sc0000066-1491911889:431643..431697 | TCONS_00006305-exon-sc0000066-1491911889:431643..431697 | Clytia hemisphaerica | exon |
| TCONS_00006305-exon-sc0000066-1491911889:428902..429520 | TCONS_00006305-exon-sc0000066-1491911889:428902..429520 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000066 | supercontig | sc0000066:428902..433788 - |
Blast
The following BLAST results are available for this feature:
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