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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063655 ID=TCONS_00063655|Name=TCONS_00063655|organism=Clytia hemisphaerica|type=transcript|length=830bpRun BLAST on NCBI protein sequence of TCONS_00063655-protein >TCONS_00063655-protein ID=TCONS_00063655-protein|Name=TCONS_00063655-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp MATTWGNDDRASFYTTKHSWRGKYKRVFSIGSKAITTYNPSTLEVTNQWARun BLAST on NCBI transcript from alignment at scaffold_397:67836..88329- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063655 ID=TCONS_00063655|Name=TCONS_00063655|organism=Clytia hemisphaerica|type=transcript|length=20494bp|location=Sequence derived from alignment at scaffold_397:67836..88329- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_397:67836..88329- >TCONS_00063655 ID=TCONS_00063655|Name=TCONS_00063655|organism=Clytia hemisphaerica|type=CDS|length=7470bp|location=Sequence derived from alignment at scaffold_397:67836..88329- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00063655 vs. Swiss-Prot (Human)
Match: DJC13 (DnaJ homolog subfamily C member 13 OS=Homo sapiens GN=DNAJC13 PE=1 SV=5) HSP 1 Score: 293.508 bits (750), Expect = 2.150e-89 Identity = 136/244 (55.74%), Postives = 185/244 (75.82%), Query Frame = 1
Query: 100 NDDRASFYTTKHSWRGKYKRVFSIGSKAITTYNPSTLEVTNQWAYNDFFSISPSSKTLN-ELIIVVRKAKEGKKTVSMTFSSDHRADLLTYALKMRTAFADQKQLKELNFNAFKHHWSENRMPIILRVTPCSLDQVDRATNRILCSYDYKDMDGLAEVSDYPGGFVVVHGGFNRLHLFSSESKEEIMKKVVEFAYNHIGINIKKRKEPIDFDYFQTRRLGKFNDDDSITSLTEFRVQKITPRSS 828
N D A FYTTKHSWRGKYKRVFS+G+ AITTYNP+TLEVTNQW Y D SISP K E + RK GKK+ ++ FS++HR +LLT AL+ RT F++ K + +N +KHHWS++R P+IL VTP DQ++ ATNR+LCSYDY++++G ++SDY GGF +++GGF+RLHLF+SE +EEI+K ++ A N+IGI+++ RKEP++F+ + R GK++ D+SITSL EF VQKI+PR S
Sbjct: 7 NKDLACFYTTKHSWRGKYKRVFSVGTHAITTYNPNTLEVTNQWPYGDICSISPVGKGQGTEFNLTFRKGS-GKKSETLKFSTEHRTELLTEALRFRTDFSEGK-ITGRRYNCYKHHWSDSRKPVILEVTPGGFDQINPATNRVLCSYDYRNIEGFVDLSDYQGGFCILYGGFSRLHLFASEQREEIIKSAIDHAGNYIGISLRIRKEPLEFEQYLNLRFGKYSTDESITSLAEFVVQKISPRHS 248 The following BLAST results are available for this feature:
BLAST of TCONS_00063655 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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