TCONS_00063532 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063532
Unique NameTCONS_00063532
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length729

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063532 ID=TCONS_00063532|Name=TCONS_00063532|organism=Clytia hemisphaerica|type=transcript|length=729bp
GCTGATTTTCCTTATTCTTTTCTAAGGCGGACATCATCTTAATTGTTGGA
TGTGGTGACCAAGACCCAGCTGTTGGAAAGtTGGAATCACAGCTGGAGAA
TATGACGACCATCCGTGCGCAGAAAGATCTTATTCTTTTGTACAACGACG
AAACATTCAAACAACCTACCGAAACAATCGATTGGTTAAATGCCAGACGT
TGGATTTCTGCGCATCATCACGTTCGATGCCCAAGAAGAGTCTTCAAAAG
AAAACTATTGTCAGCCCGTTACCATGACGACCCAAACTATGAGGGACCAG
ATAGGATGTCAGATTTTGCTCGATTGGCTCGTGTGTTGACTGGAACGGCA
GTTGGCCTTGTCTTGGGTGGCGGAGGTGCCAGaGGTATTTCACATGTTGG
TATCATCAAAAGAATGTTAGAAGCAGGAATACCGATTGACCGTGTGGGAG
GTACGAGCATGGGTGCCTTTATTGGTGCTATTTATGCAGAGCATGGATCT
ATTGTGAGAACCACTCAACGTGCCAGAGAGGGCTGTTTGaaaatggCATC
AATGTGGAGGAAACTGCTCGATATGACTTACCCTTACACCTCGCTTTTTA
CCGgtaagtaagtgtcatactTGCGCTAGGGGCTTGTCTTTGGTACGATT
GTGTTTTGacctaggctacgtcatatcttccttcgtttcgagcgtaaaac
tcctactcttcgggctgtgagcactgctc
Run BLAST on NCBI

protein sequence of TCONS_00063532-protein

>TCONS_00063532-protein ID=TCONS_00063532-protein|Name=TCONS_00063532-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MTTIRAQKDLILLYNDETFKQPTETIDWLNARRWISAHHHVRCPRRVFKR
KLLSARYHDDPNYEGPDRMSDFARLARVLTGTAVGLVLGGGGARGISHVG
IIKRMLEAGIPIDRVGGTSMGAFIGAIYAEHGSIVRTTQRAREGCLKMAS
MWRKLLDMTYPYTSLFTGK
Run BLAST on NCBI

transcript from alignment at scaffold_392:81749..90838-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063532 ID=TCONS_00063532|Name=TCONS_00063532|organism=Clytia hemisphaerica|type=transcript|length=9090bp|location=Sequence derived from alignment at scaffold_392:81749..90838- (Clytia hemisphaerica)
GCTGATTTTCCTTATTCTTTTCTAAGGCGGACATCATCTTAATTGTTGGA
TGTGGTGACCAAGACCCAGCTGTTGGAAAGGTTTATTCTTATTTGAGTCT
TCCATTCTTTCTAACGTAATCTGAAGTTGGCTTTTTCTACTGGTCGCCTT
CAAAAAGAAAACGTTTGTCGACATTATTATGGGCTTTTCAAATTCAATTC
TACGAATCAAAATTTTAGCCTCATGAAGAAATTTGTCATAGCTATGTGAA
TATGTAATTCCCAGAAGTCATAATTTGGCTTGGCAAATGGCGAATTCCGC
CGGTCGAAGAACTCGAAACGAAACTTGAACTCACCGGTATCCTCTATTCG
CTGGCTGATGAAATCTCCTGTAATCAACTCTTTTAAATGGGTTTATACAG
TTAGATTAAGTGCGTTTATAAACTTTGTTTCGAATCATGAATTCTGAAAA
ATTGCCTGCGTCGCTTGACTTTTTCGAAATAAAGTATAAACTTTATATAC
ATTTACTTTTCTATTGTTTGCAGAGTTTACCATACTCCTCAGTACTCATT
TGTAATTTTCTGTATTTTCACTTTCTTATCCCGTTTTTCTAATGAGGAAA
ATAACAGACTTGATGCACAATTATTTTCTGCTAAAATATTAAAGCACACA
AATACACTCAATCATAGAGTGCACAAGCGTCCATCCCGTAGAAATTTTCG
GGGGAAGGGCTAATAAAAATAGCTCCAGCTAAATTTCAAGAATGAAGCCC
CCCCCCCGCCTCCCCGAAACGGAAAATTGTGCTTAAAAGTGGCAAAAGCC
AAAGTGATGCATACTTACNCACTTTTCTGTTGTTTGCAGAGTTTACCATA
CTCCTCAGTACTCATTTGTAATTTTCTGTATTTTCACTTTGCTTATCCCG
TTTTTCTAATGAGGAAAATAACTATTTTCTGCTAAAGTATTAAAGCACAC
AAATACACTCAATCATAGAGTGCACAAGCGTCCATCCCGTAGAAATTTTC
GGGGGAAGGGCTAATAAAAATAGCTCCAGCTAAATTTCAAGAATGAAGCC
CCCCCCCCGCCTCCCCGAAACGGAAAATTGTGCTTAAAAGTGGCAAAAGC
CAAAGTGATGCATACTTACTTAGAATACTTAGAAGTGTTCGACGCTCTGT
GGCTTCCACGCATCTCGTCGAGACCATTGGCATGTGGCCGATACTGTTTG
ATTCAGCACGCCTCAAGATTTTGTAGCCTGAAACAAGAGGTTAATTCGAA
ACAGTACGCAAATAACGATCTGCATTAAAGTTGTTTTTTTTACATTTTGT
AAGATTCCTCCAATCTTTGGGTAAGGAATTGAACAATTTTGGTCGCTACT
TACGAGGTGTTGAAAGGGGCTTCTCTTTATCAGGGGAATTAAACACTTCC
TTCCTTGTCTAAATTAGAAATCGGTAAAATAGATTTTTCAAAATATTTGA
AATTTTTGAATTATCTGCTAAGCCCCCAGTTCAATTACTCTATTCTCTAA
ACATAGCCCCCTTATCGAGGCAGCTCCAAGAATTATCAAACGCGAAAATA
ATAATTAGCTCCCGCTAAGCTCAGGGGGGTGCATACTAGTCAGATGTTGA
TGGTTGCGTACGAGAGAAACTATTTTCGCGTTTGATAATTTCTCAAGAAA
ATATGCTATAATAACCACTTTTACAAAAGTACCCTTTTTGACTTCTTCAT
AAACCTATACATTTCTCTGGTATGTCTATCTTCCGACGCCACTCCACGAG
ATTGAATCGATTTCCCATTCTATCGCACCTCTTCCTAATTCTTCCGTCTC
AGACGCTTGTCCATCTCATTGATGCTTAAAAAGACTCCTTTTGTCTGAAA
GACTTGAAAGAAAATGTTAAATATTAGGGATTATTTGTTTTGAGAAGTCT
AATTTCTGTCCGAGAAGAAAAGCTAAAGGAGTGAATCTAAGTGAATTTTT
TGTTTTGATTTATAGTTGGAATCACAGCTGGAGAATATGACGACCATCCG
TGCGCAGAAAGATCTTATTCTTTTGTACAACGACGAAACATTCAAACAAC
CTACCGAAACAATCGATTGGTTAAATGCCAGACGTTGGATTTCTGCGCAT
CATCACGTATTTGTTCTTCTCTCTTTTTACCCTCCATATAATTGAATGAT
AAGTCGCATTAACATCCTTTATTCGGGTAATGTCGTATTTGCTACAATCC
GTGCCATAATATATTTGCACTTTTGGCTAATCTACCATTTTTCGAAAATT
GAAGTTCGAGCGAGAATGTCAATTTTAGGCCCTCAACTTGATTTCATCGA
TTATTTCGATCTGGGAGGGATTTATTGGTTNTAGTTTTCTAAGTTTATAA
TTAATTCCCAATCGACTTTAGCAAAGATCTGCTACGTTGTAACAAAAATC
TTGTCGATTATTCAAATTTTGTGTATTTGACCAAATTAAAATGATTGAGC
CACTCACTTACTTGTGATACTTCTCATTTGATCGCAGGATGTCAGATTTT
GCTCGATTGGCTCGTGTGTTGACTGGAACGGCAGTTGGCCTTGTCTTGGG
TGGCGGAGGTGCCAGGTAGAGTNGTCTACCCTTCGAACCTACTTTAGAGC
ACTTACAAATCGATTGTGGTTTTGTGCCAAGTATTTTGTCCCTGATTGTA
CCTTTAGGGGTTTGAGACATTAAGAAAAAATGAGATGTATCGAAAAGTTA
CTTTGTATTCCGTTTTAGGTTCGATGCCCAAGAAGAGTCTTCAAAAGAAA
ACTATTGTCAGCCCGTGTAAGTGATCCATTATTCGATTGAAAATCATAAC
TCGAATGTTCTTTGAGCTTTCTTTTGTTTGAGTGATTTCTTATTTTCTTC
ATCTTTACTATATTTTAGTACCATGACGACCCAAACTATGAGGGACCAGA
TAGGTATAATTTTTATCGCACTTAGATTTAAAGAAAGATGATCTTTGAAG
TTTTTTCTTCGTTTCTAGTTTTCTAAGTTTATAATTAATTCCCAATCGAC
TTTAGCAAAGATCTGCTACGTTGTAACAAAAATCTTGTCGATTATTCAAA
TTTTGTGTATTTGACCAAATTAAAATGATTGAGCCACTCACTTACTTGTG
ATACTTCTCATTTGATCGCAGGATGTCAGATTTTGCTCGATTGGCTCGTG
TGTTGACTGGAACGGCAGTTGGCCTTGTCTTGGGTGGCGGAGGTGCCAGG
TAGAGTTGAACCTTGTAATCAACTGATTTCTTTCAAAAAAGCCAAAAAAA
GCTGAGGGTTAAACCTCAAACCTTCAACGTATGCCTACTATATACTTAAA
TGAATTTGAATTTTTCAGAAAACTTAGAAATAGTTAATGCATTTTTTCGA
GAATACTTCTGACACTCCGTTCAAATTCAAAAAACTCCCTAATCGTCCCA
ATATAAACTTCATAAAAACTTTCCAGCATAACATCCGAGGGTAGTATTTT
TGTCAACAAAATATGTACGTTGCAATACCTGTTTATTTGACAAAGAACCC
CTGTTTTGCCTAAACTTGTTACCCCTTCGTATATTACCCCTTCCATAATA
TAGGCGGGAGTGCTAACTTCATCGGAAAGTTTGAAACTTATTTAAAGTTG
AGCAGATTTCTCTACAGCTTGCTCTTTAGGAAATACCCACTGCCATTTTG
AAATAATAACTGTCCGCTTCATTTTCTTTTGTTACAGAGGTATTTCACAT
GTTGGTATCATCAAAAGAATGTTAGAAGCAGGTCAGTACCTACGTTATCT
CTTCCTTTGCAAAGGCTACCTTTGGTAACCTTTCACCTAAAATTTTTGAA
TATTTTCTGTCAGTCCGTAGCGCCGGACGCTATTTACAGAAAAAAAAGAT
TCCCAATACATTAATTGGTTTCCTTTCTGAATATCGGGGAAATGTAGCGT
GATTTTTTGTTTTATTTAACTAATTTTCATGGTGTCGGCTTTTGAAACTA
AATAAACCAGCTGCGCTGGAAGGTCGCCTAAATGGAATAGCTTTTTAAAG
AGCTTAAAAGTTTGAAAAAAGTATACGACAAAAAGCTTAACAGTGTAACA
CGTGATTTGCGAATGTGAAAAATCTCGCATTAATGTCAAAATGACTGAAG
TTGATTTTAAGTTAATGTTAGAAAAGATAAAATGAGATTGGAATCAACCT
GAAAAATATTCTTCAGAAACAAATACGTAATATAATATTATTTTTGTCAT
CCCTAAAATCTTAAAAGTTTTCAGAAAGTTATCATTTTTTAAAAGTGACA
TTAGGGATATAGGTGAAAATAGCCTAAATTTTTTCTGAAGAGATAAAAAA
ACCGTTCGAGTTAAGGACACATTCAAGTTATAGGGTTTGAGTTTGAAGAC
GGTTACTTAATCATATCATGTTTAACTTATATCAATGAATGTTTCTTGTT
TGTACAATAAAAAATTGTTGCTAGAAAGTTTTAATAAATTATTATAGTAA
ATCTAATAATACAGTTGAAGTAATCTTTTAACAAAAGTAAAAAATTTGGA
GGGGATTTAATATGGCTGCGAGCTTGAAAAATTAAATTTGACGGGAATTT
ATTTGCCTTAAAATAGATAACATTTGGGGGGAGAAAACAATAATCTAAAT
TTGGCGTCGAATGGCAGTAAAAGTTACATTTGGATGATTTTGGCCCAATC
CACCAAATTAAATTCCCGCTAAATTTAATTTTCAAGTTAACCACCAAATT
AAAAGGACCCTCCAGGCACACTGGAAACTTCCGGAGTTTTACAGACCAGC
TAAAAAAACACTATTTTTATCTCTGGAAAGCTTAGGAGCTCTTCCCGGCT
GGAGCAAAGTGATTCTTAACACAGCTCCAGAGTTCCGGTGTAGATCAATT
GCCGAAATACGAGAAAAACGGCACTTTTTGCTCCGGACGTTTCTGGAGCG
TCGGGAGGGTCCTAAATTAAATTCCCTTTGAAAAAACTTTTTCGGCCATC
CGCCAAATTAAATTCCCACCAAAATTTCTCCTTTTAATGTAGGTGCAATG
TCACATTGTGTAATTAAAACTCCAGCAAATATCTTGATAACTCCATGTTT
CAATGGATGCAAGGAGAACAACAATAATAATCAAAAGGGCCATTCCAGAG
AAAGGATACGTAACGTCACTCTCATTTTTACTAGATGCCAGTGGGGAGAC
AGTTGTTCAGCCGGGCATAAACTCCAATAATTGCAGTTGACAACTGGACA
ATATCTTGAAATGGCCCAAAAAGGAGCCTGAAATAAAAGAAATAAACTGG
CTGCCAAACAGCCGACAGTTGTATGTTTGTTCAAGAAATTTTAAGTCAAT
ACTTGCAATGGTTACACAAAATTACTCGTCTTGGAACGGTGAATCATCAA
TCAAATCTTGCTTAAGCGTTTAGGTGATATATAAATGTTCTTTTGCTTCA
CTTCAAATCTGCTAATTGTAGCTAAGAAATTCATGGTATGCAATTGATAC
ATTGGTTAGGTTGCCATATGCAGTGAGTGATCTTGGTTGGGACATGCTAT
CAACTGTTATCATAGATTTCGAGTAATTGAAACAATAATAAACTTATTCT
TATCTAATCTATCTTATTTTTCTTGTCAACACAAACACATCCATCTTCCA
AAACCAAATGTTTAAACCTCAAAAGTGATTCTAGTGAAAGGAGGTTTGTT
TTCAACAACATCACGAGTGTGGTAGTTTGAATGGAATAATATCAATGAAG
AACTATAAATTTCAATTTCAATTTTGAAGAATCATTATTGTAGTTGTAGA
TTTAAAATCTACATCAAGAATTATCTGCTGCTTGCACTTGTAGTAGAAAC
TTTCGACAACTTTCACGAGGCTTTTAATTATCTCCGTTATTTAGATTTCA
TAAAACAAGTGTGCTAACTACTACGGAGCTAATTAGAATCTACACACTGC
AAATACTGTCTGATAAGTTTGCGTGGCGCAATATAACAGAGATAAAACGG
CTTATGCAAGAATTTACGCGGGAAATAATTTCCCGATTTACCGAACATTT
ACCGAATCGGGCGACCAAACTTTCACAAAAGAGTCGTATGGAGAAAACAC
CGAATTTAAAGGTCTCCTTCACTTGCGTGAGGCGACCAAAAAATGTAAAG
GGAAATCTGTATTTACACTTGTCTATCAAAGGTAACGAATTGCTCAATCG
ATTAATAATCAATTTTATCGGCGATCCAAAAAATATCAGTAATCTGATTG
GTTAAAAAGAGTACAATATATCTTGTATTTTACATGTAAAAATATAAATT
GACGAAAAGATGTTGTTGCATTGTAGCGGTAGCAGCAATCTAACGTCACT
TTTCTACAAGAGTGCCCAGCGCTTTTTTCCAACAAGAAATTATATTATAT
TATATTATATTATATTAGAGTTGTCATGCAGCAAAGGAAGGAATGAGCAA
ATGAAAGTGGATGCTTAAAGGGCATCATCTCCTAACATTGCTTACACAGC
AACTTTTGTTCTCTTTTTTCCGCGCCCATGCGAGTGCAAAAAAAAATTAG
AAATTCTACTGTTAATTCCGCCGTGTCACCATTAAGGCACGTTCTTTCTA
TATCACCAAAAGAAATATCTATTAAAGGTCCTCTTTTACTCTAAAAGCTT
TAAATGTTTTTGTGGATGAGTACTTAATGTATTAATTAATCCCATCTCTG
AATCCCAGTCAAGAAACTTTAAAGGTTTCATTATTTGATTAAGTGGCCAG
GGGATAGCTTAAGATATGAAATGCATTTAAAAGTTTTTTCAGTTACTTGA
TTTTGATTTAGCCCGCCCTTTTTGGCTAGCTTCTCTGTTATGGGCTATTG
TACAATTTTTGGACCTACCTAAGGTAGTCCTTTAAATTAACCCTTGTCCG
TTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTCTGTTACCAGCTT
TTCTCGGGATCAGCTCATTAGTTTTTTCTAATTTTTTGCACAATGATGCA
AAATGGCAATGCCCAAAATGTGACGGAGCCCGATTTTCGAAAAAAAAAAT
TTTTCCGGCCGAAAATTGCGGAAATATGCCGAAAAAACTGATTTTTCGGC
ATTTTCTCGAGATTTCATCATTAGTTTTTTCAGATTTTTTGCTCAAAGAT
GCGTATTAACAATGCCCAAAACATGGCCTAGTCCGATTCTTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAGAAAAAATTTTTTCCGGCCGAAAATGCCGGAAATCGCCG
TTTTTCTGGATTTTCATTGGACTTTTTCCATATAATTGGTTGTTTTTCAT
TCAAAAACATTATCAATAGCAATGCCCACCATCAAGCATGTTTCAATTTT
CAATAAAATTGATTTTTGAAGCCGGAACTTTCTAAAAATCGCTGGAACAG
CCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTT
CGCCGGAAAAACTGTATTTCTTGAATTTCTTGAGCTGTACTTTATATTTT
TTCATGAAATTTTGCACACTGATGCAAAATGTCAATACCTAAATTGTGAT
CGAGCCCGATTTTCGAAAATAATTCAATTTCGGCTGAAAATGCCTGAAAT
ATGCCGGAAAAACTGGTTATTTGGCATTTTCTCGAGATTTTATCATTAGT
TTTTGCTGATTTTTTGCTCAAAGATGCGTATTTGCAATGCTCAAAACATG
GCCGAGTTCGATTTTTGAGAAATTGCAGATTTTCATTGGATTTTTTCCTT
GTATTTCTATGTTTTTCACACAAAAACATTATTGATAACAATGCTCACCA
TCAAGCATGATTTAATTGTCAATAAAACTGATTTTTGCAACCACAACTTC
CTATTTATCATTTCCCTACAACCCTTCCCTCTCCCCCCATCAACAATCAA
TGATGAATTTATTGCGTTGTGTATTTTCGCTAAACGCTATATTTTCTGAC
TGATTTTTTTCATTTTTCTTTTCGCATTGCTTTCTAACTTTCATCATCAG
GTAGGTCCATTCAGCGTGTTGCTTGTTAATCCTTCAATTGAAAATCCTTC
AACTATTAAACCCTTTCAACATCGTAACTGACTTCCCATTCTCGGTTAGG
TTTACTTTTATTTCGATTGCGCTTAAAAATCTCAACTGAATTTTTTAATG
ATAATTGGTCTTTCTACTTTGTGTTTAAGGTCCCACTATGATTGGCAGTA
GAACGACAACAAGTTGTTATTTTTTAATAAAGTTTGAATTAGAATCCGAT
TTTTTGAGTAGAGTCACAATCAAAAAGAAAAATTGAAAAAAATGGGAAGA
TCAATTACTTTCAACATTGTGCTATAATTTCCTTTTTCTCTGTTCACGTT
CAGGANAGATCAATTACTTTCAAGATTGTGCTATAATTTCCTTTTTCTCT
GTTCACGTTCAGGAATACCGATTGACCGTGTGGGAGGTACGAGCATGGGT
GCCTTTATTGGTGCTATTTATGCAGAGCATGGATCTATTGTGAGAACCAC
TCAACGTGCCAGAGAGGGCTGTTTGGTAAGCTTTTTTTATACCGTTACTT
TTAACCACCTGGGAAGCTAGCTTTCTCTTTCTTCTGATGTCACCTTTTTT
TTTATCATTTTGCATTGTGTTTTCAGAAAATGGCATCAATGTGGAGGAAA
CTGCTCGATATGACTTACCCTTACACCTCGCTTTTTACCGGTAAGTAAGT
TTCATACTTGCGCTAGGGGCTTGTCTNATCATTTTGCATTTTGTTTTCAG
AAAATGGCATCAATGTGGAGGAAACTGCTCGATATGACTTACCCTTACAC
CTCGCTTTTTACCGGTAAGTAAGTGTCATACTTGCGCTAGGGGCTTGTCT
TTGGTACGATTGTGTTTTGACCTAGGCTACGTCATATCTTCCTTCGTTTC
GAGCGTAAAACTCCTACTCTTCGGGCTGTGAGCACTGCTC

Coding sequence (CDS) from alignment at scaffold_392:81749..90838-

>TCONS_00063532 ID=TCONS_00063532|Name=TCONS_00063532|organism=Clytia hemisphaerica|type=CDS|length=3570bp|location=Sequence derived from alignment at scaffold_392:81749..90838- (Clytia hemisphaerica)
AAAATGGCATCAATGTGGAGGAAACTGCTCGATATGACTTACCCTTACAC
CTCGCTTTTTACCGGTAAGTAAGAATACCGATTGACCGTGTGGGAGGTAC
GAGCATGGGTGCCTTTATTGGTGCTATTTATGCAGAGCATGGATCTATTG
TGAGAACCACTCAACGTGCCAGAGAGGGCTGTTTGAGGTATTTCACATGT
TGGTATCATCAAAAGAATGTTAGAAGCAGGATGTCAGATTTTGCTCGATT
GGCTCGTGTGTTGACTGGAACGGCAGTTGGCCTTGTCTTGGGTGGCGGAG
GTGCCAGTACCATGACGACCCAAACTATGAGGGACCAGATAGGTTCGATG
CCCAAGAAGAGTCTTCAAAAGAAAACTATTGTCAGCCCGTATGACGACCA
TCCGTGCGCAGAAAGATCTTATTCTTTTGTACAACGACGAAACATTCAAA
CAACCTACCGAAACAATCGATTGGTTAAATGCCAGACGTTGGATTTCTGC
GCATCATCACAAAATGGCATCAATGTGGAGGAAACTGCTCGATATGACTT
ACCCTTACACCTCGCTTTTTACCGGTAAGTAAGAATACCGATTGACCGTG
TGGGAGGTACGAGCATGGGTGCCTTTATTGGTGCTATTTATGCAGAGCAT
GGATCTATTGTGAGAACCACTCAACGTGCCAGAGAGGGCTGTTTGAGGTA
TTTCACATGTTGGTATCATCAAAAGAATGTTAGAAGCAGGATGTCAGATT
TTGCTCGATTGGCTCGTGTGTTGACTGGAACGGCAGTTGGCCTTGTCTTG
GGTGGCGGAGGTGCCAGTACCATGACGACCCAAACTATGAGGGACCAGAT
AGGTTCGATGCCCAAGAAGAGTCTTCAAAAGAAAACTATTGTCAGCCCGT
ATGACGACCATCCGTGCGCAGAAAGATCTTATTCTTTTGTACAACGACGA
AACATTCAAACAACCTACCGAAACAATCGATTGGTTAAATGCCAGACGTT
GGATTTCTGCGCATCATCACAAAATGGCATCAATGTGGAGGAAACTGCTC
GATATGACTTACCCTTACACCTCGCTTTTTACCGGTAAGTAAGAATACCG
ATTGACCGTGTGGGAGGTACGAGCATGGGTGCCTTTATTGGTGCTATTTA
TGCAGAGCATGGATCTATTGTGAGAACCACTCAACGTGCCAGAGAGGGCT
GTTTGAGGTATTTCACATGTTGGTATCATCAAAAGAATGTTAGAAGCAGG
ATGTCAGATTTTGCTCGATTGGCTCGTGTGTTGACTGGAACGGCAGTTGG
CCTTGTCTTGGGTGGCGGAGGTGCCAGTACCATGACGACCCAAACTATGA
GGGACCAGATAGGTTCGATGCCCAAGAAGAGTCTTCAAAAGAAAACTATT
GTCAGCCCGTATGACGACCATCCGTGCGCAGAAAGATCTTATTCTTTTGT
ACAACGACGAAACATTCAAACAACCTACCGAAACAATCGATTGGTTAAAT
GCCAGACGTTGGATTTCTGCGCATCATCACAAAATGGCATCAATGTGGAG
GAAACTGCTCGATATGACTTACCCTTACACCTCGCTTTTTACCGGTAAGT
AAGAATACCGATTGACCGTGTGGGAGGTACGAGCATGGGTGCCTTTATTG
GTGCTATTTATGCAGAGCATGGATCTATTGTGAGAACCACTCAACGTGCC
AGAGAGGGCTGTTTGAGGTATTTCACATGTTGGTATCATCAAAAGAATGT
TAGAAGCAGGATGTCAGATTTTGCTCGATTGGCTCGTGTGTTGACTGGAA
CGGCAGTTGGCCTTGTCTTGGGTGGCGGAGGTGCCAGTACCATGACGACC
CAAACTATGAGGGACCAGATAGGTTCGATGCCCAAGAAGAGTCTTCAAAA
GAAAACTATTGTCAGCCCGTATGACGACCATCCGTGCGCAGAAAGATCTT
ATTCTTTTGTACAACGACGAAACATTCAAACAACCTACCGAAACAATCGA
TTGGTTAAATGCCAGACGTTGGATTTCTGCGCATCATCACAAAATGGCAT
CAATGTGGAGGAAACTGCTCGATATGACTTACCCTTACACCTCGCTTTTT
ACCGGTAAGTAAGAATACCGATTGACCGTGTGGGAGGTACGAGCATGGGT
GCCTTTATTGGTGCTATTTATGCAGAGCATGGATCTATTGTGAGAACCAC
TCAACGTGCCAGAGAGGGCTGTTTGAGGTATTTCACATGTTGGTATCATC
AAAAGAATGTTAGAAGCAGGATGTCAGATTTTGCTCGATTGGCTCGTGTG
TTGACTGGAACGGCAGTTGGCCTTGTCTTGGGTGGCGGAGGTGCCAGTAC
CATGACGACCCAAACTATGAGGGACCAGATAGGTTCGATGCCCAAGAAGA
GTCTTCAAAAGAAAACTATTGTCAGCCCGTATGACGACCATCCGTGCGCA
GAAAGATCTTATTCTTTTGTACAACGACGAAACATTCAAACAACCTACCG
AAACAATCGATTGGTTAAATGCCAGACGTTGGATTTCTGCGCATCATCAC
AAAATGGCATCAATGTGGAGGAAACTGCTCGATATGACTTACCCTTACAC
CTCGCTTTTTACCGGTAAGTAAGAATACCGATTGACCGTGTGGGAGGTAC
GAGCATGGGTGCCTTTATTGGTGCTATTTATGCAGAGCATGGATCTATTG
TGAGAACCACTCAACGTGCCAGAGAGGGCTGTTTGAGGTATTTCACATGT
TGGTATCATCAAAAGAATGTTAGAAGCAGGATGTCAGATTTTGCTCGATT
GGCTCGTGTGTTGACTGGAACGGCAGTTGGCCTTGTCTTGGGTGGCGGAG
GTGCCAGTACCATGACGACCCAAACTATGAGGGACCAGATAGGTTCGATG
CCCAAGAAGAGTCTTCAAAAGAAAACTATTGTCAGCCCGTATGACGACCA
TCCGTGCGCAGAAAGATCTTATTCTTTTGTACAACGACGAAACATTCAAA
CAACCTACCGAAACAATCGATTGGTTAAATGCCAGACGTTGGATTTCTGC
GCATCATCACAAAATGGCATCAATGTGGAGGAAACTGCTCGATATGACTT
ACCCTTACACCTCGCTTTTTACCGGTAAGTAAGAATACCGATTGACCGTG
TGGGAGGTACGAGCATGGGTGCCTTTATTGGTGCTATTTATGCAGAGCAT
GGATCTATTGTGAGAACCACTCAACGTGCCAGAGAGGGCTGTTTGAGGTA
TTTCACATGTTGGTATCATCAAAAGAATGTTAGAAGCAGGATGTCAGATT
TTGCTCGATTGGCTCGTGTGTTGACTGGAACGGCAGTTGGCCTTGTCTTG
GGTGGCGGAGGTGCCAGTACCATGACGACCCAAACTATGAGGGACCAGAT
AGGTTCGATGCCCAAGAAGAGTCTTCAAAAGAAAACTATTGTCAGCCCGT
ATGACGACCATCCGTGCGCAGAAAGATCTTATTCTTTTGTACAACGACGA
AACATTCAAACAACCTACCGAAACAATCGATTGGTTAAATGCCAGACGTT
GGATTTCTGCGCATCATCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039826XLOC_039826Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063532-proteinTCONS_00063532-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063532-exon-scaffold_392-1575043694:90759..90838TCONS_00063532-exon-scaffold_392-1575043694:90759..90838Clytia hemisphaericaexon
TCONS_00063532-exon-scaffold_392-1575043694:88733..88873TCONS_00063532-exon-scaffold_392-1575043694:88733..88873Clytia hemisphaericaexon
TCONS_00063532-exon-scaffold_392-1575043694:88073..88120TCONS_00063532-exon-scaffold_392-1575043694:88073..88120Clytia hemisphaericaexon
TCONS_00063532-exon-scaffold_392-1575043694:87936..87970TCONS_00063532-exon-scaffold_392-1575043694:87936..87970Clytia hemisphaericaexon
TCONS_00063532-exon-scaffold_392-1575043694:87640..87717TCONS_00063532-exon-scaffold_392-1575043694:87640..87717Clytia hemisphaericaexon
TCONS_00063532-exon-scaffold_392-1575043694:87108..87151TCONS_00063532-exon-scaffold_392-1575043694:87108..87151Clytia hemisphaericaexon
TCONS_00063532-exon-scaffold_392-1575043694:82164..82276TCONS_00063532-exon-scaffold_392-1575043694:82164..82276Clytia hemisphaericaexon
TCONS_00063532-exon-scaffold_392-1575043694:81749..81938TCONS_00063532-exon-scaffold_392-1575043694:81749..81938Clytia hemisphaericaexon
TCONS_00063532-exon-scaffold_392-1510915933:90759..90838TCONS_00063532-exon-scaffold_392-1510915933:90759..90838Clytia hemisphaericaexon
TCONS_00063532-exon-scaffold_392-1510915933:88733..88873TCONS_00063532-exon-scaffold_392-1510915933:88733..88873Clytia hemisphaericaexon
TCONS_00063532-exon-scaffold_392-1510915933:88073..88120TCONS_00063532-exon-scaffold_392-1510915933:88073..88120Clytia hemisphaericaexon
TCONS_00063532-exon-scaffold_392-1510915933:87936..87970TCONS_00063532-exon-scaffold_392-1510915933:87936..87970Clytia hemisphaericaexon
TCONS_00063532-exon-scaffold_392-1510915933:87640..87717TCONS_00063532-exon-scaffold_392-1510915933:87640..87717Clytia hemisphaericaexon
TCONS_00063532-exon-scaffold_392-1510915933:87108..87151TCONS_00063532-exon-scaffold_392-1510915933:87108..87151Clytia hemisphaericaexon
TCONS_00063532-exon-scaffold_392-1510915933:82164..82276TCONS_00063532-exon-scaffold_392-1510915933:82164..82276Clytia hemisphaericaexon
TCONS_00063532-exon-scaffold_392-1510915933:81749..81938TCONS_00063532-exon-scaffold_392-1510915933:81749..81938Clytia hemisphaericaexon
TCONS_00063532-exon-scaffold_392-1491911889:90759..90838TCONS_00063532-exon-scaffold_392-1491911889:90759..90838Clytia hemisphaericaexon
TCONS_00063532-exon-scaffold_392-1491911889:88733..88873TCONS_00063532-exon-scaffold_392-1491911889:88733..88873Clytia hemisphaericaexon
TCONS_00063532-exon-scaffold_392-1491911889:88073..88120TCONS_00063532-exon-scaffold_392-1491911889:88073..88120Clytia hemisphaericaexon
TCONS_00063532-exon-scaffold_392-1491911889:87936..87970TCONS_00063532-exon-scaffold_392-1491911889:87936..87970Clytia hemisphaericaexon
TCONS_00063532-exon-scaffold_392-1491911889:87640..87717TCONS_00063532-exon-scaffold_392-1491911889:87640..87717Clytia hemisphaericaexon
TCONS_00063532-exon-scaffold_392-1491911889:87108..87151TCONS_00063532-exon-scaffold_392-1491911889:87108..87151Clytia hemisphaericaexon
TCONS_00063532-exon-scaffold_392-1491911889:82164..82276TCONS_00063532-exon-scaffold_392-1491911889:82164..82276Clytia hemisphaericaexon
TCONS_00063532-exon-scaffold_392-1491911889:81749..81938TCONS_00063532-exon-scaffold_392-1491911889:81749..81938Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_392supercontigscaffold_392:81749..90838 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.772406	1.21366	3.64211	5.30607	1.09813	1.32049	3.24913	1.47127	6.26763	4.62239	8.77843	4.15975	6.39128	0.709146	6.75878	0.996509	1.25915	6.56302	5.51801	1.1258	1.24403	3.42855	2.52882	1.15158	0	1.16498	18.327	7.49959	3.28021	7.97851
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002641PNPLA_dom
IPR001423LysoPLipase_patatin_CS
IPR016035Acyl_Trfase/lysoPLipase
Vocabulary: Biological Process
TermDefinition
GO:0006629lipid metabolic process
GO:0046470phosphatidylcholine metabolic process
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004622lysophospholipase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006629 lipid metabolic process
biological_process GO:0008152 metabolic process
biological_process GO:0046470 phosphatidylcholine metabolic process
molecular_function GO:0004622 lysophospholipase activity
Blast
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BLAST of TCONS_00063532 vs. Swiss-Prot (Human)
Match: PLPL6 (Neuropathy target esterase OS=Homo sapiens GN=PNPLA6 PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.755e-50
Identity = 112/199 (56.28%), Postives = 142/199 (71.36%), Query Frame = 3 
Query:   24 KADIILIVGCGDQDPAVGKLESQLENMTTIRAQKDLILLYNDETFKQPTETIDWLNARRWISAHHHVRCPRRVFKRKLLSARYHDDPNYEG-----PDRMSDFARLAXXXXXXXXXXXXXXXXXXXISHVGIIKRMLEAGIPIDRVGGTSMGAFIGAIYAEHGSIVRTTQRAREGCLKMASMWRKLLDMTYPYTSLFTG 605
            +AD ILIVG GDQ+P +G+LE  LEN T +RA K L+LL+ +E    PT T++WLN R W S H H+RCPRR+F R+   A+ H+   YE       DR SDF+RLARVLTG  + LVLGGGGARG SH+G++K + EAG+P+D VGGTS+G+FIGA+YAE  S  RT QRARE    M S+   +LD+TYP TS+FTG
Sbjct:  861 QADCILIVGLGDQEPTLGQLEQMLEN-TAVRALKQLVLLHREEG-AGPTRTVEWLNMRSWCSGHLHLRCPRRLFSRRS-PAKLHE--LYEKVFSRRADRHSDFSRLARVLTGNTIALVLGGGGARGCSHIGVLKALEEAGVPVDLVGGTSIGSFIGALYAEERSASRTKQRAREWAKSMTSVLEPVLDLTYPVTSMFTG 1054
The following BLAST results are available for this feature:
BLAST of TCONS_00063532 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PLPL61.755e-5056.28Neuropathy target esterase OS=Homo sapiens GN=PNPL... [more]
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