TCONS_00063465 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063465
Unique NameTCONS_00063465
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length475

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063465 ID=TCONS_00063465|Name=TCONS_00063465|organism=Clytia hemisphaerica|type=transcript|length=475bp
CCCAGTAGGAAAACTTAAGAGTCAAGAGTAAGAGGAAAAGGACATCAGTC
TTGACTTCAAAGCAACCTTGCCCACAAAATAGTATGCCAGCATCTATCTC
CATCGGTGACTTCTTAAATGCAGGAAAGCTGGTGATTCCAACAGAGGAGA
AGGAAGTACCATTGATACTTGAATCTTTCAATATAAAACATGGAATATGG
CAGAAACAAACACCTTTAACCTTTCGTATGCAATTACAAAAGTTTGCTGA
GGGAGGATTTCGTAATGCATTTAAAGCGTACAAAACAGAGAATGATGCGA
CAAAAATGTGGGTCATTAAGAAATTCAAGGCAACAGCTTAGGAAGTATGT
GGGCCACGCTATGAAATGACCCTTGAGCAGCACACTCGAAAACAAGTGCA
GATGCATACTGCAGCTAAAGCTATCACAGTGAAATGTGTTACAAGGCCTG
GTTTTCGTGAAAATTGGTTTACATA
Run BLAST on NCBI

transcript from alignment at scaffold_39:58697..59479-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063465 ID=TCONS_00063465|Name=TCONS_00063465|organism=Clytia hemisphaerica|type=transcript|length=783bp|location=Sequence derived from alignment at scaffold_39:58697..59479- (Clytia hemisphaerica)
CCCAGTAGGAAAACTTAAGAGGTATGAACCTGCACAACCAAGGGATTTCA
TTGACTTTTCATCATATTAGAAGTTAACACTGAAAAATGTAAAGGATGCT
TGTGAGAAGTTCTATGGAGAAGCAGCCGGCTCTTGTGATGTTCTTTATGA
TGTGTTAGGACCTTCTTGTTCATTAGATGAACAACTTTCTGGGATGACAT
TTTTCCGTGTGCGGTTTGTCAAGCCGTCAGAGATTTCCAATAAACCTATG
TCATCTTCAAATCGAACCAACCGCATGTCCTCAAAGAGAGAAAATGACAG
TGTAAAAAGTGTTCTTTTTTCTAAACCAGTCAAGAGTAAGAGGAAAAGGA
CATCAGTCTTGACTTCAAAGCAACCTTGCCCACAAAATAGTATGCCAGCA
TCTATCTCCATCGGTGACTTCTTAAATGCAGGAAAGCTGGTGATTCCAAC
AGAGGAGAAGGAAGTACCATTGATACTTGAATCTTTCAATATAAAACATG
GAATATGGCAGAAACAAACACCTTTAACCTTTCGTATGCAATTACAAAAG
TTTGCTGAGGGAGGATTTCGTAATGCATTTAAAGCGTACAAAACAGAGAA
TGATGCGACAAAAATGTGGGTCATTAAGAAATTCAAGGCAACAGCTTAGG
AAGTATGTGGGCCACGCTATGAAATGACCCTTGAGCAGCACACTCGAAAA
CAAGTGCAGATGCATACTGCAGCTAAAGCTATCACAGTGAAATGTGTTAC
AAGGCCTGGTTTTCGTGAAAATTGGTTTACATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039776XLOC_039776Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063465-exon-scaffold_39-1575043694:59459..59479TCONS_00063465-exon-scaffold_39-1575043694:59459..59479Clytia hemisphaericaexon
TCONS_00063465-exon-scaffold_39-1575043694:58697..59150TCONS_00063465-exon-scaffold_39-1575043694:58697..59150Clytia hemisphaericaexon
TCONS_00063465-exon-scaffold_39-1510915933:59459..59479TCONS_00063465-exon-scaffold_39-1510915933:59459..59479Clytia hemisphaericaexon
TCONS_00063465-exon-scaffold_39-1510915933:58697..59150TCONS_00063465-exon-scaffold_39-1510915933:58697..59150Clytia hemisphaericaexon
TCONS_00063465-exon-scaffold_39-1491911889:59459..59479TCONS_00063465-exon-scaffold_39-1491911889:59459..59479Clytia hemisphaericaexon
TCONS_00063465-exon-scaffold_39-1491911889:58697..59150TCONS_00063465-exon-scaffold_39-1491911889:58697..59150Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_39supercontigscaffold_39:58697..59479 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.130062	0	0.147744	4.39772	2.4253	1.62698	3.34156	1.34689	2.51844	1.04206	0.513001	0	0.0967382	0	0.382124	0.463313	0.205248	0.373931	0.148363	0.358349	0.367239	0.208374	0.174238	1.17663	1.08211	0.299513	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063465 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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