TCONS_00006255 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00006255
Unique Name	TCONS_00006255
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1696

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000066:332034..339267+

transcript sequence

>TCONS_00006255 ID=TCONS_00006255|Name=TCONS_00006255|organism=Clytia hemisphaerica|type=transcript|length=1696bp
tttagaatgaGTGAAACCTatggagaagaaaaaaatcctaAATGAAATCT
ACAAGACTGAGAAAAGTTACTTGCACCATTTGGTTTTACTAAAAACCTTA
TTTTTGGAGCCATTGAAAATCTCATCAGTGCTACCAGCTCGACACATTGA
TGGAATCTTTTCAAATATTGAGGCGATCTATCAAGTCAGTGCTCACTTGT
TGGAGCTGATGGAATCTGAAGGTGTCATCCATGCCCTATTAAACCTTGCT
CCATATCTCAAATTGTATTCACTCTATGCCAATAACTTCAACACATCCAA
TAAACTATTAGAGGAATGTCTAAAGAATTATCCAGACTTCCACAGACTGG
TATCATTTCAAGAGACGCGAGAGGAGATGCAATGTTTGAAACTATCTGCA
CTTCTTGTTACTCCCATTCAACGTGTACCAAGGTATAGACTTTTAGTCGA
AACACTTTTGGCAAAGACACCAGCAGATgcaattgattttaaaaagctca
aagATGCATACAACAAACTGAATGAAATAGCTATTCACATCAACGAATGT
GTCCGACagcatgaaaatttcatgacCATGTTGGGTATTCAGAACcgttt
ctctggaaatcaacgACCACAAATTATTGCTCCAGGAAGGAAGTTCTTGA
AAGAAGGAAATCTCACCAAGATCACAACAAGTGGTCATGTCAAACTTCGA
AAAGTTTATCTCTTCAACGATATTCTTCTCGTCGCAAAATGTGAATCCAA
TGGGTTGTTATCTTGTCGTGAGATTTTTGAATTGAACGATTCAATCTTCG
AAAGTGTTTTGGGAAACACTTCCAACGGCAATGGAGTGTTCAGGaTGATA
GACAAGAAGAAGAGTTTGGTTTTATGTTGCATGGAAGAAACAAATACCTG
GGCTTCGGATATCAAAAATGCTATTCAGAATGTACATTGCACCTCGAATC
GATTCATCTCTATTGAGAATggtgaaaagaaaagaattttcctGAATGGT
GCCAAGaCCAGAGAATCGcagaaatcggaaaaaatgttgaaaaggcaAAC
AGTTTTGGAGAGCAAATCCACCAGCTCCATCATCGCATCAAATGCTGCAA
ATAACAACAACAATGTCTCATCTGATGCCAATCATTATTACCATAAAAAc
gacaccattgattccacgaTCACCAGCAAGTGGCTTCACAACAATACTGA
CTCAGCGGTCTTTGAATCCGGACAGCCAAGTGTTGCCATTGAAAATAGCA
ACGTAAATAATGGAAGTGGCACTGCTGCATTCAAACAACATTGGAGTTTA
AGTTTCTCATCAGGGATAGAGAACCGACCTTCCATCAGGTCTTTACGTGG
TAGCATCCAACAAATCATTAGTTGTTCCCCTTCAAAACGTAAGAGAAAAA
CTTCCGAGGCTTCTATTGTTCAAGAAAAAAAACAGAAAACTATGCACAAT
GATTCAAATGATTATGGgaCGGGGATTGGGGAGAATCAAAAGGACCAATC
ATATTCAAGTTGCAGAGTAATGTAAGTTAGCTTATAAAATGTATTTTCTC
TATTTATAGTGGTTTTTTGTTAGataatttaatgatatttttgtactgta
ttttttgattttttgtatgtttttgtatctttttttttttacttgggAGT
AATTATTATCAAGGGAATAGCTATATAGTCATATAATGAATCAAag

Run BLAST on NCBI

transcript from alignment at sc0000066:332034..339267+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00006255 ID=TCONS_00006255|Name=TCONS_00006255|organism=Clytia hemisphaerica|type=transcript|length=7234bp|location=Sequence derived from alignment at sc0000066:332034..339267+ (Clytia hemisphaerica)
tttagaatgaGTGAAACCTatggagaagaaaaaaatcctaAATGAAATCT
ACAAGACTGAGAAAAGTTACTTGCACCATTTGGTTTTACTAAAAACCGTA
AgctcaaaatctttcaaattttagtctttTAGTATTTATATTTGACATTT
CTCTGCTTCATCTCCTAATTATATTAACCTGTCTACATTAAGTTTTCTGA
AAATGATAATGACTGCCTCTTTTGGatataaaatattctgaaaacttttg
acaatctgtcaaaaatttaaaattcagctatctgcaaaatataggacata
tttttttattattttcatccaTAGTTATTTTTGGAGCCATTGAAAATCTC
ATCAGTGCTACCAGCTCGACACATTGATGGAATCTTTTCAAATATTGAGG
CGATCTATCAAGTCAGTGCTCACTTGTTGGAGCTGATGGAATCTGAAGGT
GTCATCCATGCCCTATTAAACCTTGCTCCATATCTCAAATTGTATTCACT
CTATGCCAATAACTTCAACACATCCAATAAACTATTAGAGGTAtcatttt
gagataaatttcaattaaattcaaattattttctagAAAGCTTTTCTTCT
TTGCTATATCCCTAGAGAATATATTATGTTTGTGTTTGACGGCTTAAAAT
TTACTATTATTCATCAGATTATCCTAACTTACAGTCTTCTCGATTTACAA
TCCGTTCAGAAGTGACTTCCACTTAAAtgtcattttctgaataatttgtA
GGAATGTCTAAAGAATTATCCAGACTTCCACAGACTGGTATCATTTCAAG
AGACGCGAGAGGAGATGCAATGTTTGAAACTATCTGCACTTCTTGTTACT
CCCATTCAACGTGTACCAAGGTGTGTTTCTACTTTTTATCTTTACACAGA
ACCCAATAAACTGTAATTTGCTCATAAGAAGATTTTTTCTACTCCTagtt
taaaaatgaaagttgtaTCTAGGCTGGGTACTTATGATACaattaaaaat
catttgatCATACTTTTAAGctaaatttttaaacattaattGTTTTATAC
AGGTATAGACTTTTAGTCGAAACACTTTTGGCAAAGACACCAGCAGATgc
aattgattttaaaaagctcaaaggtacaaatttgaatattacttaaaggg
ataatcagatggtttgagatatttagattacagaaaccttcctgtggtcc
ttagtaaaacctcgaagtatttttgtgtaataaTTTTCCAATTAatcgag
atatcaaaattttaaatttttgaaaacgggttcttacacggttcttacgt
tgaaattctattgttttcatcgTAAAAGCCAAAAACTAGTAGCTTAAATA
TCTCGACTAAGGAAAATAGTCAGGCAAAATAATTTAGgattttgctcagg
acaatagaaggatctcacatgccaaatattgcaaaccatctgattatccc
tttaaaagattgaaagataatttttatAGGCTGTTTCATTGGACACAGCA
GATAAATCAGGCTGGTAATAAATGAAATTATGTCAGAGGTCTTATGACAA
TATCACTTTGAAGAGGTATAGTGAATTTGGTGGAGTTGTTTCTTGGGTCA
TCATAAATTAAATGGAACCAATCCCCAAATTCACTGATTTTGATGTTTAC
ATATTGTATATCGttgaaaaaaactttagaaatttcttttcagACAATAC
AATATACAGTGTGTGGAGAAACAGAACATAATTTTCATGAATAATTCTCA
AAatctttattgatttttataaCCTTATTACTCAATAAGGTAACCTTGAA
ATTTCTTTCATCAAATCAGCGCATTTGTACCAGTTTTCAGTATCCTTATG
GTTTTAGTCATAAGGGGCCTGACTAAAACCTCTGATAAACTTCTCAGTTC
AAATTATATTAATTTCAGTAATAAACTTCTCAGCTCAAATTACAGGAATT
TTAGTTTCAAACAGATTCCTAAACATGCATTTTGTCTTTTTCACAGATGC
ATACAACAAACTGAATGAAATAGCTATTCACATCAACGAATGTGTCCGAC
agcatgaaaatttcatgacCATGTTGGGTATTCAGAACcgtttctctgga
aatcaacgACCACAAATTATTGCTCCAGGTACGATGCTGCGcttttttga
aagctttataAAGTGATTCAGAAAGTGGCTTCTTTTTCGCAAATCTATTA
TCTTAGAACCCTAGTGTACATATCTCCCAACTGATAAACCCAAACGTTTG
GTATCAGTTAAGTGGTAAAGACTTTGTTGTATAACCAGGGGATaagcaat
atttttaaaatcttataGTCGGGATTGGAAATTTGTCAACtcactctaat
tcgaacctctattattcgaatctttctgtaattcgaactaaaatagtGGT
CCCCTAACTGGAAAGTGGTTtcaattactctctgtaattcgaagaaCGTT
TTTGGGCTCATGAGGTccaatcgaattagagagagtcaactgtagttGGT
AAAATGCTGTACAGAAGATTTCTGATTTATAGCAGTATTATGAGTAGGCA
TCATATCCTGGATTGACAGGGGCAAATTAGAAAACCATGCAGTAAAAGTA
TCTAAGATTCTTGACCATGTAACAAATTGTTTAGATAGCCAATGAAAGAC
TAGATTTCTTCTTGTTTTAGGAAGGAAGTTCTTGAAAGAAGGAAATCTCA
CCAAGGTGACCatgctgtccaatattttcattttaaaccaAGTTTTCTGA
TGTCTttattctttgttttcttgaatTTACCACAGTTGATGATAAGCTAA
GAAAACATATACCCTATCTAGCAGAAACCTCTAAAGATAATATCAAAAAT
CCATCCTATATGGTGCTTTGCTTTCgaagtttttaccaaaatttgatatt
ttcaggtttttttctttccaatatatggcaaagattttcgaaaaatgagt
CCCATGCAGGGCTAAAATCATACTGCTTTCAAATCCTCTCCTTATATTTT
CCATCTATCTCATTTTGTAGATCACAACAAGTGGTCATGTCAAACTTCGA
AAAGTTTATCTCTTCAACGATATTCTTCTCGTCGCAAAATGTGAATCCAA
TGGGTAAATTTCTCTACATTATGTTTGTGATCACTGCGTTATCAAAATCC
AACCATTAGGTCGATTGTTGTTAATTTTACTTGATGTTTTTTGGCTTTAT
CAATTAAATCttttaccttaagtggataaattttcgcgtggacttttttt
cgcgaattaagaatctaaaaatttcgcgtggacaaaatttcgcgaatcag
cctctttttcaccCGATTTCTTTCATTATCCTAgaggttttggccaattt
ttagatttcaaatatttcgcgtggacaaaatttcgcgaaaacggccaaaa
ttcgcgaaaaccgcgaaaattaatccacgcaaaatttaatccacttaagg
gcAAAATATAGTGTTCAGAGACCAAGAAGTTAGGCTCCaaacttttctaa
aaatttggGAGTAATAAAAAAACGAGTCTTTCATGAGGGGATTATCTTTA
AATTAGAAGATTTTTCTGAGATGCTCTATATATGTTAGTCAAGGCTATGA
AGAGCCTGGTTTATTCCGAACGGCTGCCCAAATATTGGCGATCTGAAACA
CAGGTATTAACTTCAATATGGAAAAATTTCGTTCTCGTTTTAGGTTGTTA
TCTTGTCGTGAGATTTTTGAATTGAACGATTCAATCTTCGAAAGTGTTTT
GGGAAACACTTCCAACGGCAATGGAGTGTTCAGGGTTTGTCTTTGTGGTT
TTCCTGATTATTTCAACCTCTTGAAAAGGCTACATCCTCCAGTTAAAAAC
AGGAATTTATTGCCCCATTCTCAAAAGAAGCTAGACATTTTAATAATGAC
TCGGTTACTAGTTAACTACTGAAAGCCTTGACAAGTTTTAGGAAGTTCTA
TAAATTCAACtgagtttttattgaaatcaaactttgatggactttttaat
tgaaaacgaACTATTGAACCCAATACATAcatattgttgaaattttaatt
tttcttcagaTGATAGACAAGAAGAAGAGTTTGGTTTTATGTTGCATGGA
AGAAACAAATACCTGGGCTTCGGATATCAAAAATGCTATTCAGTAATCtt
tcaattttattcaaatttaacttCGCTTAAatatttagtattcagtttaA
TCAGGTTTAATAACTAGCCATTATTTAATCCGTTGCAACTTTGTCCTGTG
ATATGGGCAGGTCCCTAAGTAATCACTGCACCTTTaatgttgtaaaaaat
attctgtaactttttaaagattttggcTTCCAACAGTCTTTTGTGGTTTA
CGGTTAACCAGATTTAATAGCTAAAATAATTCCATTACTTTTTTTAGGAA
TGTACATTGCACCTCGAATCGATTCATCTCTATTGAGAATggtgaaaaga
aaagaattttcctGAATGGTGCCAAGGTTTTTGATTAGTTTCACGTTTCA
ATTCAAAACCACATTTCTCTATCATATCATAtatgatatttattttttat
attcgAACATCCTGGGTCCCCGCAACTGCTCATTTACCCGATTTCGAAGT
TTGTTGCAACGCTCTATATACTAATCCCTAGCACCATGGgtgatttttta
agctttttgaaaaatctggccGTGTGTTATCTCTTAGGGTTAGAGAAACC
TATATTTTGTCAGTACTAGTATGCAAGTAAATCGAGGGGAATGCAACCAG
CTTAATCTTTCCCGCGGAGAACTAAGATAACAGTTAACAtgatttatttg
atatttttgtagaCCAGAGAATCGcagaaatcggaaaaaatgttgaaaag
gcaAACAGTTTTGGAGAGCAAATCCACCAGCTCCATCATCGCATCAAATG
CTGCAAATAACAACAACAATGTCTCATCTGATGCCAATCATTATTACCAT
AAAAAcgacaccattgattccacgaTCACCAGCAAGTGGCTTCACAACAA
TACTGACTCAGCGGTATTCTTCATAATAAATTATGTTCCAACAATCTtaa
gtcaaatttttttctgattccgTTATTGTTTGTCTCGTGAAAGACAATGG
GAACTTATGACAATGTGAAGTTGCCCGCCTTCCTCCATAGACTTCAATGC
GTAATACTTGGCAAAGTTGCTTACAAATTAGCTGGAATTTATACTGAAAC
ACATTCTCGTCTACCCTGTTAGACAAAAACCACTTTTTTTATCGCGCTTT
ATCGTCTGTTGCTTTTTGCCGcggaatcgaatgtttttggaCGGGAAAGT
CCGTCCAAGATTTTCTCTTCAGCACAGCTCATTTTGcataaaacagataa
aaaatttggtttgtgggaaggtactggctaattCTTGTCAAGTTATCCCT
TATTAACGATCAAAACTATTTGAACGGTCCACAACAGTTCCACAACTCGA
ATCAATTTGGTTTCTCCATCTTTATTCTTCTTTCACGtgaccgggtagct
cagtcggtagagcattcgcctaacaatctaagggttgtgggttcgatccc
cggtcaccgccaactcagcggatgagtagcttagattgggtaatctgatc
taggcggtaagttactgggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaagttactgggagctgagag
taggtgtggcgctccacctcagcattcgatctcccaggtctagcgcaaat
agaaaaggggatagactccctcacttcCGGCttcgccgacagccaccaga
tgaatatacttactttacttttttttactctACACTATTCTTGGGACAGG
TCTTTGAATTCGTAAAAAATTATGTATTGTCAATGAAAAATGGCAGATTT
TGAAGTGTCTGTGCCAGGATTAGGATCTTGTTTTTCACACTTTACTTCAT
TATGACAGGTCTTTGAATCCGGACAGCCAAGTGTTGCCATTGAAAATAGC
AACGTAAATAATGGAAGTGGCACTGCTGCATTCAAACAACATTGGAGTTT
AAGTTTCTCATCAGGGATAGAGAACCGACCTTCCATCAGGTCTTTACGTG
GTAGCATCCAACAAATCATTAGTTGTTCCCCTTCAAAACGTAAGAGAAAA
ACTTCCGAGGCTTCTATTGTTCAAGAAAAAGTAAGTCCGTCTCTTGGTCT
AGTCTCTTTGTTCTTACTTATAAATTGCCAAATCCTACATAAATTCCCAA
ATCGAATTCTCATATTTTCAATATATGCTTAAAAGTAGGACAAACTAGAA
AATAGCTTTCACTTTGTATGGTGGCATAAAATTATGGATACACTAATGAA
TCTAGGATATCATCCAAAGTTCTACTTAATTCAAATctatatgttttatt
ttttatacagAAACAGAAAACTATGCACAATGATTCAAATGATTATGGGT
AttgtattttacttttttaatacTATTATGCATATTTTCAATCTTGTCAT
GTGTTAACATATTTTTATACCTTTTTAATGTCGCGACGGTTCATTTGCTG
GTCAAATAGCTGCCAAGGTAACTTGATATCCATACCTTATACTTTCAACC
GTAGCGACCGTAGCAGGAAGGTAGAGCACCCAGCTATGGTGTGCAAGGTT
ATGGGCTCGATCTCCAGCCTGgccataccaaagattctcaaaatggtact
tgatgcctctctgcttgatgctcagcaactaaagagacggatcaagggta
agtggagaaatccagggaaaggagtggcacCCTCCCAGACcctcgggtag
acagctagagaaaaagGAGTCCTTGGGTCGTcatcgactgcggtcgcaaa
cttacttatttTTAACTNGTCATGTCACGGTTCATCTGCTAGTCAAAAAA
GTTGCTTTAGTAACTTGAGATCTGTACTTTTATCcgtttatttctttgtt
ttcaggaCGGGGATTGGGGAGAATCAAAAGGACCAATCATATTCAAGTTG
CAGAGTAATGTAAGTTAGCTTATAAAATGTATTTTCTCTATTTATAGTGG
TTTTTTGTTAGataatttaatgatatttttgtactgtattttttgatttt
ttgtatgtttttgtatctttttttttttacttgggAGTAATTATTATCAA
GGGAATAGCTATATAGTCATATAATGAATCAAag

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003576	XLOC_003576	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000066	supercontig	sc0000066:332034..339267 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
87.0525	88.0411	22.7034	14.825	25.6245	19.0459	26.5759	20.7705	24.2034	32.0926	17.0325	20.5866	15.496	14.8346	18.2273	23.0443	25.8077	28.5087	12.4506	14.5223	19.2206	19.3301	54.6081	44.6161	11.183	11.7409	26.7909	25.9667	44.1135	42.5534

Blast

[Close]

BLAST of TCONS_00006255 vs. Swiss-Prot (Human)
Match: FGD6 (FYVE, RhoGEF and PH domain-containing protein 6 OS=Homo sapiens GN=FGD6 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 7.341e-26
Identity = 66/207 (31.88%), Postives = 107/207 (51.69%), Query Frame = 2

Query:  164 NIEAIYQVSAHLLELMESEGVIHALLNLAPYLKLYSLYANNFNTSNKLLEECLKNYPDFHRLVSFQETREEMQCLKLSALLVTPIQRVPRYRLLVETLLAKTPADAIDFKKLKDAYNKLNEIAIHINECVRQHENFMTMLGIQNRFSGNQRPQIIAPGRKFLKEGNLTKITTSGHVKLRKVYLFNDILLVAKCESNGLLSCREIFEL 784
            N + + ++   +L   E + +    +   PYLK+YS Y   F+ +  LL+E  K  P F  +V   E       L L   L+ P+QR+P+YRLL+   L     DA D++  +DA   + E+A H N+ ++Q +NF  ++ IQ   +G+   +I+ PGR FLKEG L K++    ++ R  +LFND LL      +G+     +  L
Sbjct:  932 NRDLLKELEERMLHWTEQQRIADIFVKKGPYLKMYSTYIKEFDKNIALLDEQCKKNPGFAAVVREFEMSPRCANLALKHYLLKPVQRIPQYRLLLTDYLKNLIEDAGDYRDTQDALAVVIEVANHANDTMKQGDNFQKLMQIQYSLNGHH--EIVQPGRVFLKEGILMKLSRKV-MQPRMFFLFNDALLYTTPVQSGMYKLNNMLSL 1135

The following BLAST results are available for this feature:

BLAST of TCONS_00006255 vs. Swiss-Prot (Human)

BLAST of TCONS_00006255 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FGD6	7.341e-26	31.88	FYVE, RhoGEF and PH domain-containing protein 6 OS...	[more]

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TCONS_00006255 (transcript) - C. hemisphaerica